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Anopheles gambiae
cluster # 5201 cluster # 5201       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5201#0 length = 1095 sequences # 2  
consensus_5201#1 length = 600 sequences # 1  
consensus_5201#2 length = 472 sequences # 1  

consensusID : consensus_5201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1095
fasta sequence
                              [CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTTAGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAGAGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCCAAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT]

[+] EMBL BM626486             [CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTTAGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAGAGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCCAAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX624650             [                                                                                                                                                                                                                                                                                                                                                                                                                        TACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT]


>consensus_5201#0 CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTT AGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAG AGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGT GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAA GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCC AAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATT AGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATT AGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATC GAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCG CAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTT TCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTG CCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCT CCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCG CGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGG GGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACC CAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTT AAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGA ATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATT GTACGCATAATATTT



consensusID : consensus_5201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGTTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGACGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT]

[+] EMBL AL695406             [CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGTTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGACGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT]


>consensus_5201#1 CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTG TGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCG ACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAG ACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGG TTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCAC ATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTC CCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCG GCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGA CGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCAT TTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT



consensusID : consensus_5201#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence
                              [CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAACAAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA]

[+] EMBL BM575060             [CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAACAAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA]


>consensus_5201#2 CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAA CGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATT TAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAAC AAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAG CAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATT AGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATC GAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATG CGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5201#0      CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTT 60
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ----------------CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGAC 44
                                                                                  

consensus_5201#0      AGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAG 120
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      AGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAA 104
                                                                                  

consensus_5201#0      AGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGT 180
consensus_5201#2      ----CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGT 56
consensus_5201#1      TTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACAT 164
                               *          *         *         *   * * *    * *   *

consensus_5201#0      GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAA 240
consensus_5201#2      GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAA 116
consensus_5201#1      GACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGC-CTTCTTCTTTGCCTGGT 223
                      ** * *  ***  ***     * * **   *  *  ****** *** *         *  

consensus_5201#0      GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCC 300
consensus_5201#2      GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCA 176
consensus_5201#1      GGTGT-GCGGCTGGACGGT-TACATAAGCG---CCGGTGTGTTGCACTGCCGCTGCTCCA 278
                      * * * **     **  **   *****  *   *** * *   ***  ** *   *  * 

consensus_5201#0      -AAACAAACCCTTTTGC-CCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCA 358
consensus_5201#2      -AAACAAACCCTTTTGC-CCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCA 234
consensus_5201#1      CAAACTGCCGCTACTGCACCACATAAAACGG-TACCACCACCGCCAGGCGCAAGCGCGCG 337
                       ****   * **  *** **    *   *    ********* ****  **  **  ** 

consensus_5201#0      T-----------TAGAGCAGGT-------GGAAGGTTTAATTGATCGACGGCTGTGCGGA 400
consensus_5201#2      T-----------TAGAGCAGGTT---GGTGGAAGGTTTAATTGATCGACGGTTGTGCGGA 280
consensus_5201#1      CAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGG 397
                                   * * **  *        *  ** *  * *   * **    * * ** 

consensus_5201#0      GAAAATCGTACGCTCCAATTAGGCTTGGCG-ATGTGCACTTGCTGCCTTGGACAGCCCCA 459
consensus_5201#2      GAAAATCGTACGCTCCAATTAGGCTTGGCG-ATGTGCACTTGCTGCCTTGGACAGCCCCA 339
consensus_5201#1      GATGGT-GCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCA 456
                      **   * * **  *  **** *    ** * * * * *   * ***      **  ****

consensus_5201#0      ATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTG--C 517
consensus_5201#2      ATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGC 399
consensus_5201#1      AAACCGA-TGTGNGGATGGCATGGACGACGGTGT-CATTTCGGTTTCGTATGGTTTGGAT 514
                      * *   * **   * **        *     *** * * ** ** *  *   ** **   

consensus_5201#0      TTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAA-CCACC--AC 574
consensus_5201#2      TTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACC--AC 457
consensus_5201#1      TTAAAAAT-TGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGC 573
                      **     * *** *****   *   **  * *   ***   ****      * ***   *

consensus_5201#0      CAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGG 634
consensus_5201#2      CAGCACCGCTCTCTA--------------------------------------------- 472
consensus_5201#1      CNGCGCCAGCANATNGNGTGTCGTGTT--------------------------------- 600
                      * ** **      *                                              

consensus_5201#0      TTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGC 694
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      GCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGG 754
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      TACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCG 814
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      GTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGA 874
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      GGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTC 934
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      ATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTT 994
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      GGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAAT 1054
consensus_5201#2      ------------------------------------------------------------
consensus_5201#1      ------------------------------------------------------------
                                                                                  

consensus_5201#0      CGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT 1095
consensus_5201#2      -----------------------------------------
consensus_5201#1      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)