These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1095 fasta sequence [CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTTAGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAGAGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCCAAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT] [+] EMBL BM626486 [CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTTAGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAGAGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCCAAACAAACCCTTTTGCCCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTGGAAGGTTTAATTGATCGACGGCTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGC ] [+] EMBL BX624650 [ TACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGCGCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTCATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTTGGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAATCGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT] consensusID : consensus_5201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGTTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGACGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT] [+] EMBL AL695406 [CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGACAGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGTTACATAAGCGCCGGTGTGTTGCACTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGGTACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGNGGATGGCATGGACGACGGTGTCATTTCGGTTTCGTATGGTTTGGATTTAAAAATTGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGCCNGCGCCAGCANATNGNGTGTCGTGTT] consensusID : consensus_5201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAACAAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA] [+] EMBL BM575060 [CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGTGAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAAGATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCAAAACAAACCCTTTTGCCCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCATTAGAGCAGGTTGGTGGAAGGTTTAATTGATCGACGGTTGTGCGGAGAAAATCGTACGCTCCAATTAGGCTTGGCGATGTGCACTTGCTGCCTTGGACAGCCCCAATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACCACCAGCACCGCTCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5201#0 CCGCGGACGCGTGGGATAGGATATAGGTCAATAGGTCTAGCAAACTGTAAGAAGGACCTT 60 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ----------------CAGAATCCCCCGACGTTACAATATAAACTGGCAGCATAATCGAC 44 consensus_5201#0 AGCATAATTAGTATGCAGATTGCGAATGCGATCACCGATCCGTCAAAAAGAGAGAGAGAG 120 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 AGAATTGTACTGTCTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTCTCTATGCGCAATAA 104 consensus_5201#0 AGAACAAAACAAAAAACAAGATTGATGATGGTTTTAGAGGCACCGTTTTGTACTGCGTGT 180 consensus_5201#2 ----CCGCCCACGCGTCCGGATTGATGATGGTTTTAAAGGCACCGTTTTGTACTGCGTGT 56 consensus_5201#1 TTTCTCCCTCTTGCCGACAAACCACCACCAGCACCGCTCTCTATGCTGTCACTTTCACAT 164 * * * * * * * * * * consensus_5201#0 GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCAAATCGAA 240 consensus_5201#2 GAAACGCAACTAGGAGGTTCAGGTGGGAGGGTTTTGGTTTGCTCTTATCAGCTAATCGAA 116 consensus_5201#1 GACATGGCACTGAGAGACATGGTTTGGTTTGCATCTGTTTGC-CTTCTTCTTTGCCTGGT 223 ** * * *** *** * * ** * * ****** *** * * consensus_5201#0 GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCC 300 consensus_5201#2 GATTTAGCCCAAAGATAGTGCGCATAAAAGGTTCCGATCTTACGCAAAGCAGACACCTCA 176 consensus_5201#1 GGTGT-GCGGCTGGACGGT-TACATAAGCG---CCGGTGTGTTGCACTGCCGCTGCTCCA 278 * * * ** ** ** ***** * *** * * *** ** * * * consensus_5201#0 -AAACAAACCCTTTTGC-CCCTCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCA 358 consensus_5201#2 -AAACAAACCCTTTTGC-CCATCCACCGCAAACACCACCACCACCAGCAGCTGGCCTGCA 234 consensus_5201#1 CAAACTGCCGCTACTGCACCACATAAAACGG-TACCACCACCGCCAGGCGCAAGCGCGCG 337 **** * ** *** ** * * ********* **** ** ** ** consensus_5201#0 T-----------TAGAGCAGGT-------GGAAGGTTTAATTGATCGACGGCTGTGCGGA 400 consensus_5201#2 T-----------TAGAGCAGGTT---GGTGGAAGGTTTAATTGATCGACGGTTGTGCGGA 280 consensus_5201#1 CAACCGGCTGGGCAAAACAATTCCCAATCCGGTGGCTCCAATTTCCCACCTTCGAGGGGG 397 * * ** * * ** * * * * ** * * ** consensus_5201#0 GAAAATCGTACGCTCCAATTAGGCTTGGCG-ATGTGCACTTGCTGCCTTGGACAGCCCCA 459 consensus_5201#2 GAAAATCGTACGCTCCAATTAGGCTTGGCG-ATGTGCACTTGCTGCCTTGGACAGCCCCA 339 consensus_5201#1 GATGGT-GCACCATAGAATTTGCGGCGGTGGAGGAGAAGCAGGTGCAAACATCAAACCCA 456 ** * * ** * **** * ** * * * * * * *** ** **** consensus_5201#0 ATATAAACTGGCAGCATAATCGAACCAGAATTGTACCTGTCTGTGTGCTTGTGTGTG--C 517 consensus_5201#2 ATATAAACTGGCAGCATAATCGAAGCAGAATTGTACCTGTCTGTGTGCTTGTGTGTGTGC 399 consensus_5201#1 AAACCGA-TGTGNGGATGGCATGGACGACGGTGT-CATTTCGGTTTCGTATGGTTTGGAT 514 * * * ** * ** * *** * * ** ** * * ** ** consensus_5201#0 TTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAA-CCACC--AC 574 consensus_5201#2 TTGTGTGTGTGTGTCTCTATGCGCAATAATTTCTCCCTCTTGCCGACAAAACCACC--AC 457 consensus_5201#1 TTAAAAAT-TGTTTCTCTTCACCGCATTTTCTTGGCCTTGNGCCGGACGCGCGACCTCGC 573 ** * *** ***** * ** * * *** **** * *** * consensus_5201#0 CAGCACCGCTCTCTATGCTGTCACTTTCACATGACATGGCACTGAGAGACATGGTTTTGG 634 consensus_5201#2 CAGCACCGCTCTCTA--------------------------------------------- 472 consensus_5201#1 CNGCGCCAGCANATNGNGTGTCGTGTT--------------------------------- 600 * ** ** * consensus_5201#0 TTTGCATCTGTTTGCCTTCTTCTTTGCCTGGTGGTGTGCGGCTGGACGGCTTACATAAGC 694 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 GCCGGTGTGTTGCAGCTGCCGCTGCTCCACAAACTGCCGCTACTGCACCACATAAAACGG 754 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 TACCACCACCGCCAGGCGCAAGCGCGCGCAACCGGCCTGGGCAAAACAATTCCCAATCCG 814 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 GTGGCTCCAATTTCCCACCTTCGAGGGGGGATGGTGCACCATAGAATTTGCGGCGGTGGA 874 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 GGAGAAGCAGGTGCAAACATCAAACCCAAAACCGATGTGGGATGGATGGACGACGGTGTC 934 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 ATTTCGGTTTCGTATGGNTTGGATTTAAAAATTTGTTTTTTCAACGCATTTTCTTGGCTT 994 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 GGCGGACGCGCGACCTCGCANGCAGAATTGGGTGTTGTGTTGCGTGGAGTANTGTGCAAT 1054 consensus_5201#2 ------------------------------------------------------------ consensus_5201#1 ------------------------------------------------------------ consensus_5201#0 CGTTTTCGATGTGTGNCCCTTTAATTGTACGCATAATATTT 1095 consensus_5201#2 ----------------------------------------- consensus_5201#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||