cluster # 5204

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Anopheles gambiae
cluster # 5204 cluster # 5204 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5204#0 length = 870 sequences # 3

consensus_5204#1 length = 549 sequences # 1

consensusID : consensus_5204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 870
fasta sequence

                              [ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTTAAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTCACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCACAAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGATTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGGGAAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGNGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAACAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCAC-GAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAAT--GTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCNGCGCAATAAATGCATCCTGTTCTGCNATCCTGACTTTGTGCGGAGCTTTCTGGGTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTATGTGGCGGTGGATCACTCCTCAGCTTCCTAGGCTA]

[+] EMBL AL934481             [ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTTAAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTCACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCACAAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGATTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGGGAAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGNGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAACAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGGCAACAGCTTCCTGTCCATCCCGAACGATCTGCACGGAACGTACACCCGAAGAGAGGGCGAAATGTATTTACGAAAAACCGGTACCACCACGAGCAGGCACGAGCAATCGA CGGGCAGTNNGTCGACCCGG TCAGGAGCA                                                                                                                                                                                                                                                                           ]
[+] EMBL BX626979             [                         gtgcgcCGCGTCTGGTCGTCGTTATCAATCATGTTAAAGTTACCCTTCGTTTTAAG GGGAAATAGAAGATGCCTGTCCTCG GCGCTCTATCTCACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTCCATCACAAATTGGGCAATTTAGAGCGCTTAAAACAAAACATCCGGCTGCGAAAGTA TCCACTGGATTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGCACGTGGAGA   GGC  GCAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAG GAG GAACAGCAGC AACT CAAGTCAAGG GCCGTCCTTGCT CGGGATGATTTAA AAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCAC GAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAAT  GTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCNGCGCAATAAATGCATCCTGTTCTGCNATCCTGACTTTGTGCGGAGCTTTCTGGGTGAGGCGGCTATG                                                                                                           ]
[+] EMBL AL695437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          cgagttagCGATGCATTTATTGCCAACAGCTTTCTGT CAT CCGAACGATCTGCAC GAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAAT  GTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCGGCGCAATAAATGCATCCTGTTCTGCAATCCTGACTTTGTGCGGAGCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTATGTGGCGGTGGATCACTCCTCAGCTTCCTAGGCTA]




>consensus_5204#0
ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTT
AAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTC
ACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCAC
AAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGA
TTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGGGAAAA
AAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAG
NGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAACA
AATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTC
CATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAA
ACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGGA
GCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGA
CCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCNGCGCAATAAATGCATCCTGTTCTG
CNATCCTGACTTTGTGCGGAGCTTTCTGGGTGAGGCGGCTATGGTGAGCAAGGAGTCGCT
GTTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTATGTGG
CGGTGGATCACTCCTCAGCTTCCTAGGCTA

consensusID : consensus_5204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGGAGGAACAGCAGCAACTCAAGTCAAGGGCCGTCCTTGCTCGGGATGATTTAAAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGGTTTCGGCGCAATAAATGCATCCTGGTTCTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGT]

[+] EMBL AL932364             [ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGGAGGAACAGCAGCAACTCAAGTCAAGGGCCGTCCTTGCTCGGGATGATTTAAAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGGTTTCGGCGCAATAAATGCATCCTGGTTCTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGT]




>consensus_5204#1
ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAAAAAGGAAATCGAGCAGTACCGCGTGGAC
CTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGGAGGAACAGCAGCAACTCAAGTCAAGG
GCCGTCCTTGCTCGGGATGATTTAAAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGAT
GCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCACGAACGTACACCCGAA
GAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGA
CCGAGCAATGTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTAC
ATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGGTT
TCGGCGCAATAAATGCATCCTGGTTCTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTT
GAGGCGGCTATGGTGAGCAAGGAGTCGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGT
GGATAAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5204#0      ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTT 60
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      AAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTC 120
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      ACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCAC 180
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      AAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGA 240
consensus_5204#1      ------------------------------------------------------------
                                                                                  

consensus_5204#0      TTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGG-GAAA 299
consensus_5204#1      ----------------------------ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAA 32
                                                   *   *** *    * *   ** * ** * **

consensus_5204#0      AAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAA 359
consensus_5204#1      AAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAA 92
                      ************************************************************

consensus_5204#0      GNGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAAC 419
consensus_5204#1      GGAG--GAACAGCAGCAACT--CAAGTCAAGG-GCCGTCCTTGCTC-GGGATGATTTAA- 145
                      *     ************    ********** *************  *********** 

consensus_5204#0      AAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGT 479
consensus_5204#1      AAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGT 205
                      ************************************************************

consensus_5204#0      CCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAA 539
consensus_5204#1      CCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAA 265
                      ************************************************************

consensus_5204#0      AACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGG 599
consensus_5204#1      AACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGG 325
                      ************************************************************

consensus_5204#0      AGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGG 659
consensus_5204#1      AGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGG 385
                      ************************************************************

consensus_5204#0      ACCTTCGATTGCCGATGTACTGCAGCGAACTG-TTTCNGCGCAATAAATGCATCCTG-TT 717
consensus_5204#1      ACCTTCGATTGCCGATGTACTGCAGCGAACTGGTTTCGGCGCAATAAATGCATCCTGGTT 445
                      ******************************** **** ******************* **

consensus_5204#0      CTGCNATCCTGACTTTGTGCGGAGC-TTTCTGGGTGAGGCGGCTATGGTGAGCAAGGAGT 776
consensus_5204#1      CTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGT 505
                      **** *******************  ******* **************************

consensus_5204#0      CGCTGT-TTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTA 835
consensus_5204#1      CGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGT---------------- 549
                      ****** *************************************                

consensus_5204#0      TGTGGCGGTGGATCACTCCTCAGCTTCCTAGGCTA 870
consensus_5204#1      -----------------------------------