These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1031 fasta sequence [CCGAGGTTAATNGTGCTGAGCAGGTGTGAGCCGCCGCGCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATACACACCCCAGNGCTCGGGCTCGTACCTACGTACCACCGGTCTACCGGCGAAGTGAAACGAACAAAACCCATAGCTACAACGAGCACCGGGATACTTGGTCAACAATCACCACCAGCACAGCCACATGTGCTGACCTGGCCAGCTGGAATGCTGCTATACCCGAGCCATGGCTGTGCTGCTGCCCTGCACAGGGCAAGAAGAAAACTGGGCACATTCGATACTGGGCTGCTGGTCACAATCATAAAACCCCAGACCCGAAACTGTGCTACGGCGCCAGNTACCCGTACGGTAGCCCAAGCTNGGCAGCNGCCTGGCCGGNTTGCCCCGCAATNGGAATATTGCAATTTCTTGTAACCCTAACACTTGGAANCCCCTGGAATGTCAAAAACCGCAACTACTTGTGCATACATAGTAGGCTACCCAAGGGAGGCACGCGGACCTATCTCCCGGAGCTANCGCACTCGGGGCCACCGAACCGACAACCCGGCCCCAAGACCANAATAGCGCCANACCAAACGGGGCAAAACGGTAGCGTATAGNAACGGGCCCCTTGCGGGGAGACCTTGGGCTNNGCACAGCTGGGGAACAGAACCAGATGGCGGAACTNNNTACCCGCGACAAANTTGGGGGCACCCCACATTTAAAAAAGTTNCATATGGTAGTTCAACGNAAGACGGTATACTACACTTGGGNTACGNTATCTCAANGNCAATTATCACTAAAACGATCAACCCCTCTACNTTTGGTTTCCCCCCACAATCAACATGAGGGCCTTNTAGGTCGAAGACCAAGCCAAATTNGGCTCAGTACCCCTTCCGGGNAGNGGCTCACACAAACTNGGGCTGCAAGACNCTCAAAACCCCCCACCACCCCGANATTCTCCCACACCAATCTCGGACGCCNCAAAAGNTANNCTCCATCACGGGACANACACACACACACACNTACGTGTA] [+] EMBL AL695559 [CCGAGGTTAATNGTGCTGAGCAGGTGTGAGCCGCCGCGCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATACACACCCCAGNGCTCGGGCTCGTACCTACGTACCACCGGTCTACCGGCGAAGTGAAACGAACAAAACCCATAGCTACAACGAGCACCGGGATACTTGGTCAACAATCACCACCAGCACAGCCACATGTGCTGACCTGGCCAGCTGGAATGCTGCTATACCCGAGCCATGGCTGTGCTGCTGCCCTGCACAGGGCAAGAAGAAAACTGGGCACATTCGATACTGGGCTGCTGGTCACAATCATAAAACCCCAGACCCGAAACTGTGCTACGGCGCCAGNTACCCGTACGGTAGCCCAAGCTNGGCAGCNGCCTGGCCGGNTTGCCCCGCAATNGGAATATTGCAATTTCTTGTAACCCTAACACTTGGAANCCCCTGGAATGTCAAAAACCGCAACTACTTGTGCATACATAGTAGGCTACCCAAGGGAGGCACGCGGACCTATCTCCCGGAGCTANCGCACTCGGGGCCACCGAACCGACAACCCGGCCCCAAGACCANAATAGCGCCANACCAAACGGGGCAAAACGGTAGCGTATAGNAACGGGCCCCTTGCGGGGAGACCTTGGGCTNNGCACAGCTGGGGAACAGAACCAGATGGCGGAACTNNNTACCCGCGACAAANTTGGGGGCACCCCACATTTAAAAAAGTTNCATATGGTAGTTCAACGNAAGACGGTATACTACACTTGGGNTACGNTATCTCAANGNCAATTATCACTAAAACGATCAACCCCTCTACNTTTGGTTTCCCCCCACAATCAACATGAGGGCCTTNTAGGTCGAAGACCAAGCCAAATTNGGCTCAGTACCCCTTCCGGGNAGNGGCTCACACAAACTNGGGCTGCAAGACNCTCAAAACCCCCCACCACCCCGANATTCTCCCACACCAATCTCGGACGCCNCAAAAGNTANNCTCCATCACGGGACANACACACACACACACNTACGTGTA] consensusID : consensus_5206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence [CCGACGTCGCGCAACTCCCGGCAGTCGGATTTCGATAGCTACGAGGACGAGCAGTTGCAGCGGGAGCAGGAGCAGAGCAGTAACGTTAGCAGGCGCATCTCCAGCAAAAACCAGGACGGTATCGGGTGTTACGAAACGTGGAACTACGTCTACCAAAACTTGGAAAAGCAGGGCTACTCGAAGGATTTGGGCGAGCGGGGTGACTTTCTGGCGGACGAACTGGACGCCGATGATAATCATCTGATCGGTACGGCGGCGGAGGAGGACGACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCATCATGACCATCATCATCATCATCATTCGGGCAGAAGAGAGTCCGGCAACGCTTCCTCTAGCGCGACGCTACGCCGCAACCACAACGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATCGACGGCATAGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGCAACCGATGGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCACCATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGACGATCTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGC] [+] EMBL BM619255 [CCGACGTCGCGCAACTCCCGGCAGTCGGATTTCGATAGCTACGAGGACGAGCAGTTGCAGCGGGAGCAGGAGCAGAGCAGTAACGTTAGCAGGCGCATCTCCAGCAAAAACCAGGACGGTATCGGGTGTTACGAAACGTGGAACTACGTCTACCAAAACTTGGAAAAGCAGGGCTACTCGAAGGATTTGGGCGAGCGGGGTGACTTTCTGGCGGACGAACTGGACGCCGATGATAATCATCTGATCGGTACGGCGGCGGAGGAGGACGACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCATCATGACCATCATCATCATCATCATTCGGGCAGAAGAGAGTCCGGCAACGCTTCCTCTAGCGCGACGCTACGCCGCAACCACAACGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATCGACGGCATAGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGCAACCGATGGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCACCATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGACGATCTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACG ] [+] EMBL BM649666 [ ccGGTGACTTTCTGGCGGACGAACTGGACGCCGATGATAATCATCTGATCGGTACGGCGGCGGAGGAGGACGACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCATCATGACCATCATCATCATCATCATTCGGGCAGAAGAGAGTCCGGCAACGCTTCCTCTAGCGCGACGCTACGCCGCAACCACAACGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATCGACGGCATAGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGCAACCGATGGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCACCATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGACGATCTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGC] consensusID : consensus_5206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCGGACGCGTGGGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGCCACATTTGATACGGGCGCGGTCACAATCATAAACCCCAGCCCGACCGGCTCGGGCAGTCCGTCGGGCAGTGGAGCGCCGGCCGGTGCCGAATGGAATTGCAATTTCTGTACCTACCTGAACCCGGATGTCAAACGCATCTGTGATATGTGCTCCAAGAGCCGCGACTTTCGACTCGATGGCACGACGACCGCCAGCAATGGCACAACGGCAACGTGCGTTTGAACGCCTGCGGGGCTGCTGAAGCGGCAAGAAGGGACTTCGGAATGGGCCCACTAAATTGTTAGAAGTTTTGTCTTTTTTTAAATCCTCTGTCCATTTGGCTGGACTTTGTTCCTGTGTCTTTGTTCTTCACCCTGTTTAATGGACTATATTT] [+] EMBL BM592160 [CCGCGGACGCGTGGGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGCCACATTTGATACGGGCGCGGTCACAATCATAAACCCCAGCCCGACCGGCTCGGGCAGTCCGTCGGGCAGTGGAGCGCCGGCCGGTGCCGAATGGAATTGCAATTTCTGTACCTACCTGAACCCGGATGTCAAACGCATCTGTGATATGTGCTCCAAGAGCCGCGACTTTCGACTCGATGGCACGACGACCGCCAGCAATGGCACAACGGCAACGTGCGTTTGAACGCCTGCGGGGCTGCTGAAGCGGCAAGAAGGGACTTCGGAATGGGCCCACTAAATTGTTAGAAGTTTTGTCTTTTTTTAAATCCTCTGTCCATTTGGCTGGACTTTGTTCCTGTGTCTTTGTTCTTCACCCTGTTTAATGGACTATATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5206#0 ----------CCGAGGTTAATNGTGCTGAGCAGGTGTGAGCCGCCG--CGC-GGCAGCAG 47 consensus_5206#2 CCGCGGACGCGTGGGCAGAATGGTGC-GAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAG 59 consensus_5206#1 -------------------CCGACGTCGCGCAACTCCCGGCAGTCGGATTTCGATAGCTA 41 * * *** ** * * * *** consensus_5206#0 TCGGAGAAATTCGGTGACGAAGAAACAAATACACACCC-CAGNGCT--CGGGCTCGTACC 104 consensus_5206#2 TCGGAGAAATTCGGTGACGAAGAAACAAAT-CACACCC-CAGGGCT--CGGGCTCGTCCT 115 consensus_5206#1 CGAGGACGAGCAGTTGCAGCGGGAGCAGGAGCAGAGCAGTAACGTTAGCAGGCGCATCTC 101 * * * ** * * * ** ** * * * * * * *** * * consensus_5206#0 TACGTACCACCGGTCTACCGGCGAAGTGAAACGAACAAAACCCATAGCTACAACGAGCAC 164 consensus_5206#2 CGT---CCACCGGTCTACCGGCGAAG-GAAACGAACAAAACCCATAGCT-CAACGAGCAC 170 consensus_5206#1 CAGCAAAAACCAGGACGGTATCGG-GTGTTACGAAACGTGGAACTACGTCTACCAAAACT 160 *** * ** * * ***** ** * * * * consensus_5206#0 CGGGATACTTGGTCAACAATCACCACCAGCACAGCCACATGTGCTGACCTGGCCAGCTGG 224 consensus_5206#2 CGGGATACT-GGTCAACAATCACCACCA---CAGCCACA-GCGC-GATCAG--CAGCGGA 222 consensus_5206#1 TGGAAAAGCAGGGCTACTCGAAGGATT----TGGGCGAGCGGGGTGACTTT-CTGGCGGA 215 ** * * ** * ** * * * * * * ** ** * consensus_5206#0 AATGCTGCTATACCCGAGCCATGGCTGTGCTGCTGCCCTGCACAGGGCAAGAAGAAAACT 284 consensus_5206#2 AGCGCT----TACCCGAGCCATGGCGGCGCG-----CCCGCACAGGGCAAGAAGAAAAC- 272 consensus_5206#1 CGAACTG---GACGCCGATGATAATCATCTGA----TCGGTACGGCGGCGGAGGAGGAC- 267 ** ** * ** * * ** * * ** ** ** consensus_5206#0 GGGCACATTCGATACTGGGCTGCTGGTCAC--AATCATAAAACCCCAGACCCGAAACTGT 342 consensus_5206#2 GGCCACATTTGATAC-GGGC--GCGGTCAC--AATCATAAA-CCCCAG-CCCGA------ 319 consensus_5206#1 ---GACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCAT-CATGACCATCA 323 ** * ** ** * ** ** * * *** * ** consensus_5206#0 GCTACGGCGCCAGNTACCCGTACGGTAGCCCAAGCTNGGCAGCNGCCTGGCCGGN-TTGC 401 consensus_5206#2 ---------CCGGCT---CG---GGCAGTCC--GTCGGGCAGTGGAGCG-CCGGC-CGGT 360 consensus_5206#1 TCATCATCATCATTCGGGCAGAAGAGAGTCCG-GCAACGCTTCCTCTAGCGCGACGCTAC 382 * * * ** ** * ** * ** consensus_5206#0 CCCGCAATNGGAATATTGCAATTTCTTGTAACCCTAACACTTGGAANCCCCTGGAATGTC 461 consensus_5206#2 GCCG-AATGGAA---TTGCAATTTCT-GTACCT-----ACCTGAACCC-----GGATGTC 405 consensus_5206#1 GCCGCAACCACAA----CGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATC 438 *** ** * ** ** * * ** * * ** consensus_5206#0 AAAAACCGCAACTACTTGTGCATACATAGTAGGCTACCCAAGGGAGGCACGCGGACCTAT 521 consensus_5206#2 AAA---------------CGCATCTGTGATATGTGCTCCAAGAGCCGC-----GACTTTC 445 consensus_5206#1 GACGGCAT--AGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGC-----AACCGAT 491 * * * * * ** ** consensus_5206#0 CTCCCGGAGCTANCGCACTCGGGGCCACCGAACCGACAACCCGGCCCCAAG-ACCANAAT 580 consensus_5206#2 GACTCGATGGCACGACGACCGCCAGCAATGGCACAACGGCAACGTGC-----GTTTGAAC 500 consensus_5206#1 GGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCAC 551 * * ** * * * * consensus_5206#0 AGCGCCANACCAAACGG-GGCAAAACGGTAGCGTATAGN-AACGGGCCCCTTG---CGGG 635 consensus_5206#2 GCCTGCGGGGCTGCTGA-AGCGGCAAGAAGGGACTTCGG-AATGGGCCCACTAAATTGTT 558 consensus_5206#1 CATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGA--CGAT 609 * * ** * * ** * * * * consensus_5206#0 GAGACCTTGGGCTNNGCACAGCTGGGGAACAGAACCAGATGGCGGAACTNNNTACCCGCG 695 consensus_5206#2 AGAAGTTTTGTCTTTTTTTAAATCC----TCTGTCCATTTGGCTGGACTTTGTTCCTGTG 614 consensus_5206#1 CTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAA--GGGTGAGCCGCCCGCCGCCG 667 * * * ** ** * * ** * consensus_5206#0 ACAAANTTGGGGGCACCCCACATTTAAAAAAGTTNCATATGGTAGTTCAACGNAAGACGG 755 consensus_5206#2 TCTTTGTT-----CTTCACCCTGTTTAATGGACTATATTT-------------------- 649 consensus_5206#1 GCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGT 727 * * * ** consensus_5206#0 TATACTACACTTGGGNTACGNTATCTCAANGNCAATTATCACTAAAACGATCAACCCCTC 815 consensus_5206#2 ------------------------------------------------------------ consensus_5206#1 CCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCG 787 consensus_5206#0 TACNTTTGGTTTCCCCCCACAATCAACATGAGGGCCTTNTAGGTCGAAGACCAAGCCAAA 875 consensus_5206#2 ------------------------------------------------------------ consensus_5206#1 GGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACC 847 consensus_5206#0 TTNGGCTCAGTACCCCTTCCGGGNAGNGGCTCACACAAACTNGGGCTGCAAGACNCTCAA 935 consensus_5206#2 ------------------------------------------------------------ consensus_5206#1 CGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGC----------------- 890 consensus_5206#0 AACCCCCCACCACCCCGANATTCTCCCACACCAATCTCGGACGCCNCAAAAGNTANNCTC 995 consensus_5206#2 ------------------------------------------------------------ consensus_5206#1 ------------------------------------------------------------ consensus_5206#0 CATCACGGGACANACACACACACACACNTACGTGTA 1031 consensus_5206#2 ------------------------------------ consensus_5206#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||