cluster # 521

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Anopheles gambiae
cluster # 521 cluster # 521 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_521#0 length = 599 sequences # 1

consensus_521#1 length = 477 sequences # 1

consensusID : consensus_521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTATTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCCTCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCTTTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGCCCGGGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGCTTTCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGCAAGCAAAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGTGTCAAAGCT]

[+] EMBL BM646092             [CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTATTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCCTCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCTTTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGCCCGGGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGCTTTCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGCAAGCAAAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGTGTCAAAGCT]




>consensus_521#0
CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTA
TTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCC
TCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCT
TTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATA
ATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATT
CGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGCCCG
GGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGCTTT
CGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGAGGC
GTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGAT
AGCAAGCAAAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGTGTCAAAGCT

consensusID : consensus_521#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGACATGCATAGCTCTCCATCGCAGCCCGGGTTCAATGCAGCCAAAGGAAAGCGAGTTTGTGTGTTAATTTTACAGCACGTGCTTCCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGAAAAAACGAGTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGTGTCAAAGCTAAAGAAAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTTGCAGGAAGCAG]

[+] EMBL BM622419             [CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGACATGCATAGCTCTCCATCGCAGCCCGGGTTCAATGCAGCCAAAGGAAAGCGAGTTTGTGTGTTAATTTTACAGCACGTGCTTCCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGAAAAAACGAGTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGTGTCAAAGCTAAAGAAAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTTGCAGGAAGCAG]




>consensus_521#1
CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATAATACTGT
ACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTG
TTGTTGGTTTGCACTCACCCGTCGGACATGCATAGCTCTCCATCGCAGCCCGGGTTCAAT
GCAGCCAAAGGAAAGCGAGTTTGTGTGTTAATTTTACAGCACGTGCTTCCGTGCTGAGCA
ACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGAGGCGTGTGCAATTT
GATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGAAAAAACGA
GTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGTGTCAAAGCTAAAGA
AAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTTGCAGGAAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_521#0      CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTA 60
consensus_521#1      ------------------------------------------------------------
                                                                                 

consensus_521#0      TTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCC 120
consensus_521#1      ------------------------------------------------------------
                                                                                 

consensus_521#0      TCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCT 180
consensus_521#1      ------------------------------------------------------------
                                                                                 

consensus_521#0      TTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATA 240
consensus_521#1      -------CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATA 53
                               ****************************************** *******

consensus_521#0      ATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATT 300
consensus_521#1      ATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATT 113
                     ************************************************************

consensus_521#0      CGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGC--- 357
consensus_521#1      CGCCCTGTTGTTGGTTTGCACTCACCCGTCGG----ACATGCATAGCTCTCCATCGCAGC 169
                     ********************************    *********************   

consensus_521#0      CCGGGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGC 417
consensus_521#1      CCGGGTTCAATGCAGCCAAAGGAAAGC---GAGTTTGTGTGTTAATTTTACAGCACGTGC 226
                     ***************** *********   ******************************

consensus_521#0      TTTCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGA 477
consensus_521#1      TTCCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGA 286
                     ** ********************************************** *** ******

consensus_521#0      GGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATA 537
consensus_521#1      GGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATA 346
                     ************************************************************

consensus_521#0      GATAGCAAGCA-------AAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGT 590
consensus_521#1      GATAGAAAAAACGAGTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGT 406
                     ***** **  *       *** ***  ****                  * *********

consensus_521#0      GTCAAAGCT--------------------------------------------------- 599
consensus_521#1      GTCAAAGCTAAAGAAAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTT 466
                     *********                                                   

consensus_521#0      -----------
consensus_521#1      GCAGGAAGCAG 477