These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1028 fasta sequence [CAGAATCCCCGAGGTTTAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCTGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGTGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGATCGGGAAATTCAAACACGCCTAAATGAAGGTACCTTAATTGGAGCCTGGTCGGCTGCGGCCGGATGCCTTGGGGAGTTGGCTTGCTCGGCCCTGTTCCTTCAACAAGGACCGGATTTGGTGATCCTTGGGGAAGTTGGGTCCAACAGAAAAACCAAATTTGGCCATCCAATTCCGGAATTAACACTTGGATTGGTCGGCATTTTTGAAACCAAAGGTACAAACTATTCTAAGCACCTATTTATCAAGTTTGTNATACTGGCGGTCTTGGGCGTTCTTNTCCCCGGCGAAGCAACATTCCCAATTCCAAAGGCGCTTAAACAGGGCCCGATATATCTTTACCCGGGCCCTTTTCCCCCCGGGCAAAATTGCCAGGTTGACAGGGTACCAAAGGGCAGCCATTCAATTCTTAACAGAAAACAAGTACAAAACATCGGCAGGCAATAGCTCTCNCAACCCCTTNTGGGCNACGGGGCGAATATGTCCTGGTTATCAATTCGCATTAACGGAAACNTAACTTCCCGNAAGGGGTTGGAAAAACCTCCCCCTTGGAAGGCCGGAATCCTCTCCCGAATTAAGAAAAGTCGNGGCGCCGGCCTTTTANCCAAAAACCCCTTGTGCCACAACATTNGGGGATTTCCAACAAGGCCTTGGCCGCCCGACAACCCCAAAACGNTAACCCCGNGGGCGTGGGGAACTTGGGGCGCACGACGTAACCCTTCCCTCCGGAACAAAGGCAAGNCGTACAGCAAAAACNCGATGCTATGACTTTAACANACACGGCGGCA] [+] EMBL AL695570 [CAGAATCCCCGAGGTTTAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCTGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGTGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGATCGGGAAATTCAAACACGCCTAAATGAAGGTACCTTAATTGGAGCCTGGTCGGCTGCGGCCGGATGCCTTGGGGAGTTGGCTTGCTCGGCCCTGTTCCTTCAACAAGGACCGGATTTGGTGATCCTTGGGGAAGTTGGGTCCAACAGAAAAACCAAATTTGGCCATCCAATTCCGGAATTAACACTTGGATTGGTCGGCATTTTTGAAACCAAAGGTACAAACTATTCTAAGCACCTATTTATCAAGTTTGTNATACTGGCGGTCTTGGGCGTTCTTNTCCCCGGCGAAGCAACATTCCCAATTCCAAAGGCGCTTAAACAGGGCCCGATATATCTTTACCCGGGCCCTTTTCCCCCCGGGCAAAATTGCCAGGTTGACAGGGTACCAAAGGGCAGCCATTCAATTCTTAACAGAAAACAAGTACAAAACATCGGCAGGCAATAGCTCTCNCAACCCCTTNTGGGCNACGGGGCGAATATGTCCTGGTTATCAATTCGCATTAACGGAAACNTAACTTCCCGNAAGGGGTTGGAAAAACCTCCCCCTTGGAAGGCCGGAATCCTCTCCCGAATTAAGAAAAGTCGNGGCGCCGGCCTTTTANCCAAAAACCCCTTGTGCCACAACATTNGGGGATTTCCAACAAGGCCTTGGCCGCCCGACAACCCCAAAACGNTAACCCCGNGGGCGTGGGGAACTTGGGGCGCACGACGTAACCCTTCCCTCCGGAACAAAGGCAAGNCGTACAGCAAAAACNCGATGCTATGACTTTAACANACACGGCGGCA] consensusID : consensus_5210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence [CCGCAAGCGTTCGTGTACTTGCTGAAGGAGTTCCTTCCCGATATGTGCTGCTCGGTCGAGGGAGAAAGAAGCGTCTTCGGCAAGGCGGATCTTATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGTCATTGATCGAAAACTTCAAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGATTGTTAATTTCATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTTGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATACGGTAAAGGAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGAT] [+] EMBL BM597266 [CCGCAAGCGTTCGTGTACTTGCTGAAGGAGTTCCTTCCCGATATGTGCTGCTCGGTCGAGGGAGAAAGAAGCGTCTTCGGCAAGGCGGATCTTATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGTCATTGATCGAAAACTTCAAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGATTGTTAATTTCATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTAGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGT ] [+] EMBL BM588078 [ ccGGAGAAAGAAGCGTCTTCGGCAAGGCGGATCTGATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGTCATTGATCGAAAACTTCAAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGATTGTTAATTTCATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTTGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATA ] [+] EMBL BX622950 [ ACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTTGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGCGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATACGGTAAAGGAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5210#0 CAGAATCCCCGAGGTTTAAATCTACGCCAATCATAAAATACAACCGCA-ATGTTTGGACA 59 consensus_5210#1 -------------------------------------CCGCAAGCGTTCGTGTACTTGCT 23 *** ** *** * consensus_5210#0 GTGTGTTTTCCTGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGTGTGAAGAT 119 consensus_5210#1 GAAGGAGTTCCT-TCCCGATATGTGCTGCTCGGTCGAGGGAGAAAGAAGCGTCTTCGGCA 82 * * ***** * * * ****** * * * ** * * consensus_5210#0 TAATGCGCTTCAGTTTTGGCG--CCTGGTTATGTGCCGACAGTT-TCAACATCAAGGGAT 176 consensus_5210#1 AGGCGGATCTTATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGT 142 * * * * ** *** * ** * ** * **** * * consensus_5210#0 GATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACT 236 consensus_5210#1 CATTGATCGAAAACTTC-----AAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGAT 197 ***** *** * * ** ** *** *** * ** * * consensus_5210#0 CACCGATCGGGAAATTCAAACACGCCTAAATGAAGGTACCTTAATTGGAGCCTGGTCGGC 296 consensus_5210#1 TGTTAATTTC--ATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTG 255 ** * **** ** * * *** * *** ******* consensus_5210#0 TGCGGCCGGATGCCTTGGGGAGTTGGCTTGCTCGGCCCTGTTCCTTCAACAAGGACCGGA 356 consensus_5210#1 CTTGCACTAAAGCTCACCCAAAC---CTCCATCGAGCAC-TTCCTGGCACCAAACCTTGC 311 * * * ** * ** *** * ***** ** * * * consensus_5210#0 TTTGGTGATCCTTGGGGAAGTTGGGTCCAACAGAAAAACCAAATTTGGCCATCCAATTCC 416 consensus_5210#1 CCTGCTGATGGATAATATCTCTGGATC-GGGACTGGAAC--ATGTTGGCCACATAATCTA 368 ** **** * *** ** * *** * ******* *** consensus_5210#0 GGAATTAACACTTGGATT-GGTCGGCATTTTTGAAACCAAAGGTACAAACTATTCTAAGC 475 consensus_5210#1 TAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATC 428 ** * * * * ** * * * * * * ** * * consensus_5210#0 ACCTATT--TATCAAGTTTGTNATACTGGCGGTCTTGGGCGTTCTTNTCCCCGGCGAAGC 533 consensus_5210#1 GATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGA 488 * * ** * * * * * * * ** * * * * ** * consensus_5210#0 AACATTCCCAATTCCAAAGGCGCTTAAACAGGGC----CCGA----TATATCTTTACCCG 585 consensus_5210#1 TATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTC 548 * **** ** * * ** * ** * **** ** ** * * consensus_5210#0 GGCCCTTTTCCCCCCGGGCAAAATTGCCAGGTTGACAGGGTACCAAAGGGCAGCCATTCA 645 consensus_5210#1 GGCCCTTCGCTGCCTGACGTTGATGGTCAAGAT--TCGGTTGCTGTGGGA---TCATTCG 603 ******* * ** * ** * ** * * ** * * ** ***** consensus_5210#0 ATTCTTAACAGAAAACAAGTACAAAACATCGGCAGGCAATAGCTCTCNCAACCCCTTNTG 705 consensus_5210#1 CTTTCCAAGCTTTCCTTAATGAATCACCT-GATCGACGTTATCGATAACGA--------A 654 ** ** * * * ** * * * * ** * * * * consensus_5210#0 GGCNACGGGGCGAAT-ATGTCCTGGTTATCAATTCGCATTAACGGAAACNTAACTTCCCG 764 consensus_5210#1 AGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATACG--GTAAAGGAAATCTA------CG 706 * * ** * * * * * * ***** ** *** ***** ** ** consensus_5210#0 NAAGGGGTTGGAAAAACCTCCCCCTTGGAAGGCCGGAATCCTCTCCCGAATTAAGAAAAG 824 consensus_5210#1 CCAATCAT--AAAATACAACCGCAATGTTTGGACAGTGTG-TTTTCCGTGCTAGCGTATG 763 * * *** ** ** * ** ** * * * * * *** ** * * consensus_5210#0 TCGNGGCGCCGGCCTTTTANCCAAAAACCCCTTGTGCCACAACATTNGGGGATTTCCAAC 884 consensus_5210#1 CTGCCGCAAACGATCTGTACTGGGAG-------GTG----AAGATTAATGCGCTTCAGTT 812 * ** * * ** * *** ** *** * *** consensus_5210#0 AAGGC-CTTGGCCGCCCGACAACCCCAAAACGNTAACCCCGNGGGCGTGGGGAACTTGGG 943 consensus_5210#1 TTGGCGCCTGGTTATGTGCCGAC-----AGTTTCAACATCAAGGG-ATGATTGACGGAAC 866 *** * *** * * ** * *** * *** ** ** consensus_5210#0 GCGCACGACGTAACCCTTCCCTCCGGAACAAAGGCAAGNCGTACAGCAAAAACNCGATGC 1003 consensus_5210#1 CTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCA---CCGAT-- 921 * * ** * * *** * *** ** * ** *** * * **** consensus_5210#0 TATGACTTTAACANACACGGCGGCA 1028 consensus_5210#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||