These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 841 fasta sequence [NCGGCGTAGCTCAGGCCAGAATCGCCACGAGGTANTACGCTGCGCCAGCAGGAGCGAACGTTCGCGCGAGGAGTGCGAATCTGACCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTACCCCCG-AG-ATCA-GGGCGCTTATTAAGGAG-CAGCG-GCTCGGTTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCT-GGAGGAGCTGTCGAACAAGCTGCCGGTGATC-GACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAG--AAAGCGTCCACGCCGCTCGGGTTTTCGCTCGT-GCCGGA-AAGCAGCGAGCAGCCGACGCTTGACTTTATTGCG-CCGGACGAGGCCACGTT-CAA-CTACTGGA-CCGAT-GGTATC-AA-TGC-GCT-GCTCGGGCA-GCCGAT-GAC-GAGCAAGCA-GCA-GGA-GGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGACATTTCCAAGGATCCACCGGCCATTCCACCGGAGCCGGAAAATTACGACTTTTGCTTCGACAGTTAAGCAGCAGGAGGCACAAGAGAGAATGTTAAACCAAAGGTTTATTTTGTATGGCAAATTTCCAAAAAAAAAATTAATGCCACTTATTTTCGAGCATCCAAATTAAATACAGGTTTTAATTTTTGATACTTTCTCCCTCCATATCTTCCATATCGTGCAGCAGAGGGAAA] [+] EMBL BX466581 [NCGGCGTAGCTCAGGCCAGAATCGCCACGAGGTANTACGCTGCGCCAGCAGGAGCGAACGTTCGCGCGAGGAGTGCGAATCTGACCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTACCCCCGTAGAATCAGGGGCGCTTATTAAGGAGACAGCGTGCTCGGTTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGGGAGGAGCTGTCGAACAAGCTGCCGGTGATC GACATCCGNCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAGGTAAAGCGTCCACGCCGCTCGGGTTTACGCTCGTGGCCGGANTAGCAGCGAGCAGCCGACGCTTGACTTTATTGCGACCGGACGAGGCCACGTTACAAGCTACTGGACCCGATAGGTATCNAACTGCGGCTGGCTCGGGCAGGCCGATAGACAGAGCAAGCAGGCAGGGAGGGAAGACTTCG ] [+] EMBL BX625896 [ CCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTACCCCCG AG ATCA GAGCGCTTATTAAGGAG CAGCG GCTCGGCTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTACGTGCGGCTGTCCCCCAACCACAAGGTCATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCT GGAGGAGCTGTCGAACAAGCTGCCGGTGATC GACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAG AAAGCGTCCACGCCGCTCTGGTTTTCGCTCGT GCCGGA AAGCAGCGAGCAGCCGACGCTTGACTTTATTGCG CCGGACGAGGCCACGTT CAA CTACTGGA CCGAT GGTATC AA TGC GCT GCTCGGGCA GCCGAT GAC GAGCAAGCA GCA GGA GGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGACATTTCCAAGGATCCACCGGCCATTCCACCGGAGCCGGAAAATTACGACTTTTGCTTCGACAGTTAAGCAGCAGGAGGCACAAGAGAGAATGTTAAACCAAAGGTTTATTTTGTATGGCAAATTTCCAAAAAAAAAATTAATGCCACTTATTTTCGAGCATCCAAATTAAATACAGGTTTTAATTTTTGATACTTTCTCCCTCCATATCTTCCATATCGTGCAGCAGAGGGAAA] [+] EMBL AL930260 [ agATCGCCCGAGGTTAGCTT AAGAAGAAAATTACCCCCG AG ATCA GGCGCTTATTAAGGAG CAGCG GCTCGGTTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCT GGAGGAGCTGTCGAACAAGCTGCCGGTGATCTGACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAG AAAGCGTCCACGCCGCTCGGGTTTTCGCTCGT GCCGGA AAGCAGCGAGCAGCCGACGCTTGACTTTATTGCA CCGGACGAGGCCACGTT CAA CTACTGGA CCGAT GGTATC AA TGC GCT GCTCGGGCA GCCGAT GAC GAGCAAGCA GCA GGA GGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGAC ] consensusID : consensus_5216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCCCGAGGTATACGGGCGGCAGCGCGAGCGGGACAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGGAGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCGTGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCACCGGACGAGGCCACGTTCAACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGGAGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGCACATTTCCAAGGATCCACCGGCATTCCAACCGGAGCCGGAAAATTTACGAACTTATNCTGCTTTCGACAGCCTAAGCACGCCAGGAGCGGGATTTAACAGGGAACGGCACCAAAGCAGAGCANAATGGTNAAAACCCAAACGGGTTATAATANCTAGGTAATGGGCACACACTTTCCCCAACNC] [+] EMBL AL695644 [CCCCGAGGTATACGGGCGGCAGCGCGAGCGGGACAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGGAGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCGTGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCACCGGACGAGGCCACGTTCAACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGGAGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGCACATTTCCAAGGATCCACCGGCATTCCAACCGGAGCCGGAAAATTTACGAACTTATNCTGCTTTCGACAGCCTAAGCACGCCAGGAGCGGGATTTAACAGGGAACGGCACCAAAGCAGAGCANAATGGTNAAAACCCAAACGGGTTATAATANCTAGGTAATGGGCACACACTTTCCCCAACNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5216#0 NCGGCGTAGCTCAGGCCAGAATCGCCACGAGGTANTACGCTGCGCCAGCAGGAGCGAACG 60 consensus_5216#1 ------------------------------------------------------------ consensus_5216#0 TTCGCGCGAGGAGTGCGAATCTGACCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTA 120 consensus_5216#1 ------------------------------------------------------------ consensus_5216#0 CCCCCGAGATCAGGGCGCTTATTAAGGAGCAGCGGCTCGGTTACCTGATCGTGGGCACAC 180 consensus_5216#1 ------------------------------------------------------------ consensus_5216#0 GGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGT 240 consensus_5216#1 ---CCCCGAGGTATACGGGCGGCA-GCGCGAGCGGGACA-GTACTGGTATGTGCGGCTGT 55 * * *** ********* ************** ******************** consensus_5216#0 CCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGG 300 consensus_5216#1 CCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGG 115 ************************************************************ consensus_5216#0 AGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGT 360 consensus_5216#1 AGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGT 175 ************************************************************ consensus_5216#0 GCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCG 420 consensus_5216#1 GCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCG 235 ************************************************************ consensus_5216#0 TGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCGCCGGACGAGGCCACGTTCA 480 consensus_5216#1 TGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCACCGGACGAGGCCACGTTCA 295 **************************************** ******************* consensus_5216#0 ACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGG 540 consensus_5216#1 ACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGG 355 ************************************************************ consensus_5216#0 AGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGG 600 consensus_5216#1 AGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGG 415 ************************************************************ consensus_5216#0 GGGTGG-ACATTTCCAAGGATCCACCGGCCATTCCACCGGAGCCGGAAAATT-ACGA-CT 657 consensus_5216#1 GGGTGGCACATTTCCAAGGATCCACCGGCATTCCAACCGGAGCCGGAAAATTTACGAACT 475 ****** ********************** * * ***************** **** ** consensus_5216#0 TTTGCTTCGACAGTTAAGCAGCAGGAGGCACAAGAGAGAATGTTAAACCAAAGGTTTATT 717 consensus_5216#1 TATNCTGCTTTCGACA-GCCTAAGCACGC-CAGGAGCGGGATTTAA--CAGGGAACGGCA 531 * * ** * * * ** ** * ** ** *** * **** ** * consensus_5216#0 TTGTATGGCAAATTTCCAAAAAAAAAATTAATGCCACTTATTTTCGAGCATCCAAATTAA 777 consensus_5216#1 CC--AAAGCAGAGCANAATGGTNAAAACCCAAACGGGTTAT-----AATANCTAGGTAAT 584 * *** * * **** * * **** * * * * * * consensus_5216#0 ATACAGGTTTTAATTTTTGATACTTTCTCCCTCCATATCTTCCATATCGTGCAGCAGAGG 837 consensus_5216#1 GGGCACACACTT-TCCCCAACNC------------------------------------- 606 ** * * * * consensus_5216#0 GAAA 841 consensus_5216#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||