These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 735 fasta sequence [GCCAGGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGC-GATGG-AGGATGAGGCGAGTGTGCC-GTTTGGCAAGCAAAAACCGTGCTGCCAAGTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAAGAATTGTGATTGTTATGAAGCGTTTGTAAAATGAGTGGAAAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTTTGTAAATAAAAGTGC] [+] EMBL AL934703 [GCCAGGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGCAGATGGCAGGATGAGGCGAGTGTGCCGGTTTGGCAAGCAAAAACCGTGCTG CAAGTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTCAGAA TGTGACTGTCATGANGCGTTTGTAAAAT ] [+] EMBL BX625429 [ TTGCTCCAAACAATGGCCAAACCAATCCTGGGCAATCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAACCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGC GATGG AGGATGAGGCGAGTGTGCC GTTTGGCAATCAAAAACCGTGCTGCCAAGAGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAAGAATTGTGATTGTTATCAAGCGTTTGTAAAATGAGTGGAAAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTTTGTAAATAAAAGTGC] [+] EMBL BX627152 [ ACCAATCCTGGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAAA GATGG AGGATGAGGCGAGTGTGCC GTTTGGCAAGCAAAAACCGTGCTGCCAAGTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAANAATTGTGATTGTTATGAAGCGTTTGT AAATGAGTGG AAATAGGAGATAAAGTGTA TTAAAAAG ] consensusID : consensus_5219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCTGGCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCACCTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACCCGGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGCTGCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTTTCGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTGGTGGT] [+] EMBL AL695658 [TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCTGGCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCACCTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACCCGGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGCTGCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTTTCGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTGGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5219#0 --------GCCA-GGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAA 51 consensus_5219#1 TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAA-CCTTTTGCTCCAAACAATGGCCAA 59 * * * * * * ** ****** ************************ consensus_5219#0 ACCAATCCTGG-GCAACCTCGAACC-GTACAGCCTCG-GCGACAGCATCAACAACTACCT 108 consensus_5219#1 ACCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCT 119 *********** ************* *********** ********************** consensus_5219#0 GGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCA 168 consensus_5219#1 GGCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCA 179 ********* ** ***************************************** * *** consensus_5219#0 CCTGCTACTGGTCGGCGGTGCGACACT-GTACGAGCTGGCC--AGCAAGCTGTGCTCACC 225 consensus_5219#1 CCTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACC 239 *************************** ************* **************** consensus_5219#0 --GAAGAGCCCC--AACTCGTT-AGCGTAC--GATCGGCT---GGCCCA------TCTGC 269 consensus_5219#1 CGGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGC 299 ********** ******** ******* ****** ****** *** consensus_5219#0 TGCGCGGACACCTCGAG--CCGGTCGTC---AATGTGGTA-GTGGAGCGGTACAAG--TT 321 consensus_5219#1 TGCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTT 359 **** ****** ******* ********* ************ * ** consensus_5219#0 TCGCAATCTGTTCCAGCAGCGTGAC-GAACCCATCGGGCAGTACATCGTGAAGCTGCGCA 380 consensus_5219#1 TCGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCA 419 ************************* ********************************** consensus_5219#0 CGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGAT-GCACTGCGCGATCAGCTG 439 consensus_5219#1 CGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTG 479 ***************************************** ****************** consensus_5219#0 GTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGAT 499 consensus_5219#1 GTGGT------------------------------------------------------- 484 ***** consensus_5219#0 TACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGCGATGGAGGATG 559 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 AGGCGAGTGTGCCGTTTGGCAAGCAAAAACCGTGCTGCCAAGTGTGTGTTCCCAAGTAAT 619 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 TTATTATATATTAATAGTTAAGAATTGTGATTGTTATGAAGCGTTTGTAAAATGAGTGGA 679 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 AAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTTTGTAAATAAAAGTGC 735 consensus_5219#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||