cluster # 5219

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Anopheles gambiae
cluster # 5219 cluster # 5219 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5219#0 length = 735 sequences # 3

consensus_5219#1 length = 484 sequences # 1

consensusID : consensus_5219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 735
fasta sequence

                              [GCCAGGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGC-GATGG-AGGATGAGGCGAGTGTGCC-GTTTGGCAAGCAAAAACCGTGCTGCCAAGTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAAGAATTGTGATTGTTATGAAGCGTTTGTAAAATGAGTGGAAAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTTTGTAAATAAAAGTGC]

[+] EMBL AL934703             [GCCAGGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGCAGATGGCAGGATGAGGCGAGTGTGCCGGTTTGGCAAGCAAAAACCGTGCTG CAAGTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTCAGAA TGTGACTGTCATGANGCGTTTGTAAAAT                                                               ]
[+] EMBL BX625429             [                               TTGCTCCAAACAATGGCCAAACCAATCCTGGGCAATCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAACCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGC GATGG AGGATGAGGCGAGTGTGCC GTTTGGCAATCAAAAACCGTGCTGCCAAGAGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAAGAATTGTGATTGTTATCAAGCGTTTGTAAAATGAGTGGAAAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTTTGTAAATAAAAGTGC]
[+] EMBL BX627152             [                                                   ACCAATCCTGGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGTCGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTCGTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGTGGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAAA GATGG AGGATGAGGCGAGTGTGCC GTTTGGCAAGCAAAAACCGTGCTGCCAAGTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAANAATTGTGATTGTTATGAAGCGTTTGT AAATGAGTGG AAATAGGAGATAAAGTGTA TTAAAAAG                            ]




>consensus_5219#0
GCCAGGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCT
GGGCAACCTCGAACCGTACAGCCTCGGCGACAGCATCAACAACTACCTGGCCCGGCTGGA
CGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCACCTGCTACTGGT
CGGCGGTGCGACACTGTACGAGCTGGCCAGCAAGCTGTGCTCACCGAAGAGCCCCAACTC
GTTAGCGTACGATCGGCTGGCCCATCTGCTGCGCGGACACCTCGAGCCGGTCGTCAATGT
GGTAGTGGAGCGGTACAAGTTTCGCAATCTGTTCCAGCAGCGTGACGAACCCATCGGGCA
GTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGA
TGCACTGCGCGATCAGCTGGTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCT
GCTGGAACCGTTTCTCGATTACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTT
GAAATAGCGATGGAGGATGAGGCGAGTGTGCCGTTTGGCAAGCAAAAACCGTGCTGCCAA
GTGTGTGTTCCCAAGTAATTTATTATATATTAATAGTTAAGAATTGTGATTGTTATGAAG
CGTTTGTAAAATGAGTGGAAAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTT
TGTAAATAAAAGTGC

consensusID : consensus_5219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCTGGCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCACCTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACCCGGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGCTGCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTTTCGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTGGTGGT]

[+] EMBL AL695658             [TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAACCTTTTGCTCCAAACAATGGCCAAACCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCTGGCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCACCTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACCCGGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGCTGCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTTTCGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCACGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTGGTGGT]




>consensus_5219#1
TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAACCTTTTGCTCCAAACAATGGCCAAA
CCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCTG
GCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCAC
CTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACCC
GGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGCT
GCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTTT
CGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCAC
GGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTGG
TGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5219#0      --------GCCA-GGCTAATCCATTACACAAAAAAACCTTTTGCTCCAAACAATGGCCAA 51
consensus_5219#1      TGCCCGAGGTTACAAGCAGTTCGGTCCATAAAAAA-CCTTTTGCTCCAAACAATGGCCAA 59
                              *  *     * * *  * ** ****** ************************

consensus_5219#0      ACCAATCCTGG-GCAACCTCGAACC-GTACAGCCTCG-GCGACAGCATCAACAACTACCT 108
consensus_5219#1      ACCAATCCTGGTGCAACCTCGAACCTGTACAGCCTCGTGCGACAGCATCAACAACTACCT 119
                      *********** ************* *********** **********************

consensus_5219#0      GGCCCGGCTGGACGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACGGCCCA 168
consensus_5219#1      GGCCCGGCTAGAGGCGTACTTTGAGCTGAACGGCATTGGTGACGATAAAAAAACTGGCCA 179
                      ********* ** ***************************************** * ***

consensus_5219#0      CCTGCTACTGGTCGGCGGTGCGACACT-GTACGAGCTGGCC--AGCAAGCTGTGCTCACC 225
consensus_5219#1      CCTGCTACTGGTCGGCGGTGCGACACTTGTACGAGCTGGCCCAGGCAAGCTGTGCTCACC 239
                      *************************** *************   ****************

consensus_5219#0      --GAAGAGCCCC--AACTCGTT-AGCGTAC--GATCGGCT---GGCCCA------TCTGC 269
consensus_5219#1      CGGAAGAGCCCCCAAACTCGTTTAGCGTACCGGATCGGGCTTGGGCCCAATCTTGCTTGC 299
                        **********  ******** *******  ******     ******        ***

consensus_5219#0      TGCGCGGACACCTCGAG--CCGGTCGTC---AATGTGGTA-GTGGAGCGGTACAAG--TT 321
consensus_5219#1      TGCGGACCACCCTCGAAGCCCGGTCGGTTCAAATGTGGTAAGTGGAGCGGTACCAAGTTT 359
                      ****      ******   *******     ********* ************ *   **

consensus_5219#0      TCGCAATCTGTTCCAGCAGCGTGAC-GAACCCATCGGGCAGTACATCGTGAAGCTGCGCA 380
consensus_5219#1      TCGCAATCTGTTCCAGCAGCGTGACCGAACCCATCGGGCAGTACATCGTGAAGCTGCGCA 419
                      ************************* **********************************

consensus_5219#0      CGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGAT-GCACTGCGCGATCAGCTG 439
consensus_5219#1      CGGCGGCACTGAGCTGCGATTTCAACTCCTTTCTGGAGGATTGCACTGCGCGATCAGCTG 479
                      ***************************************** ******************

consensus_5219#0      GTGGTGGGTGTTGCTGATCAGGAGTTAAGGAATCGGTTGCTGCTGGAACCGTTTCTCGAT 499
consensus_5219#1      GTGGT------------------------------------------------------- 484
                      *****                                                       

consensus_5219#0      TACATGTCGGCGTGCATCATCGCACAGGCCTGGGATGTGTTGAAATAGCGATGGAGGATG 559
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      AGGCGAGTGTGCCGTTTGGCAAGCAAAAACCGTGCTGCCAAGTGTGTGTTCCCAAGTAAT 619
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      TTATTATATATTAATAGTTAAGAATTGTGATTGTTATGAAGCGTTTGTAAAATGAGTGGA 679
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      AAATAGGAGATAAAATGTATTTAAAAAGATGTGTTTGTGTTTGTAAATAAAAGTGC 735
consensus_5219#1      --------------------------------------------------------