These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 705 fasta sequence [CCGCGGACGCGTGGGAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGA-GTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTC-GGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCACGAGCGCACCA] [+] EMBL BM590898 [CCGCGGACGCGTGGGAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGA GTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTC GGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCACG ] [+] EMBL BM605817 [ ccgCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGACGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTCGGGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCACGAGCGCACCA] consensusID : consensus_5227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG] [+] EMBL BM606316 [CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG] consensusID : consensus_5227#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [CCAGGTTTTCACGTTGATACACTGCGCCCACACCGAGTTGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAACATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGATTGGCGTTCGGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCAGACACCANCAGCATGGATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAGTTCCAGGACATTACCGGGCTTGGCACCGATATGAACGTGTGCCGCCGACATACTGATCCGCCACCAGGTGGGACCTGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGCGAGGG] [+] EMBL AL695793 [CCAGGTTTTCACGTTGATACACTGCGCCCACACCGAGTTGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAACATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGATTGGCGTTCGGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCAGACACCANCAGCATGGATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAGTTCCAGGACATTACCGGGCTTGGCACCGATATGAACGTGTGCCGCCGACATACTGATCCGCCACCAGGTGGGACCTGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGCGAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5227#0 --------------------------CCGCGGACGCGTGGGAGGATTTTACATTGCACTC 34 consensus_5227#1 CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTC 60 consensus_5227#2 ------------------------------------------------------------ consensus_5227#0 GGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGG 94 consensus_5227#1 GGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGG 120 consensus_5227#2 -------------------------------------------------------CCAGG 5 ** consensus_5227#0 TGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGC 154 consensus_5227#1 TGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGC 180 consensus_5227#2 TTTTCACGTTG-ATACACTGCGCCCACACCGAGTTGTTGGATGT-TTGGTTGATGAAAGT 63 * * * ******* * *** ** ** *** * ** * * * * consensus_5227#0 GACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTG 214 consensus_5227#1 GACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTG 240 consensus_5227#2 GG-----TGGCAAACATTGCTCCAACCCG------TCAATC-CGCCCTTCTGTTGGCCAG 111 * ** * ** * ** * * ***** * * * * * * * consensus_5227#0 CTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGT 274 consensus_5227#1 CTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGT 300 consensus_5227#2 AAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCA--CCGT--ACGCAGC 167 * * ** * * * * *** ***** **** * * * consensus_5227#0 TCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTT-GCCACATTACGTAAGGAGAA 333 consensus_5227#1 TCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTT-GCCACATTACGTAAGGAGAA 359 consensus_5227#2 TTGTTAGCACAGGTGATC-ACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGA 226 * * * ****** ** * * * * * * ** * * * * * consensus_5227#0 GTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGA-GGCCACCGTTGATAAC 392 consensus_5227#1 GTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGA-GGCCACCGTTGATAAC 418 consensus_5227#2 TTGGCGTTCGGGCGAAACG-GCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCA 285 ** * ** * * * ** * ** ** * ***** ****** * consensus_5227#0 ACTGCGCCCCACACCCGCAA-GAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACAC 451 consensus_5227#1 ACTGCGCCCCACACCCGCAA-GAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACAC 477 consensus_5227#2 GACACCANCAGCATGGATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAG 345 * * ** ** ** * * ** * * *** * * *** * ** consensus_5227#0 TCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTC 511 consensus_5227#1 TCCCTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTC 537 consensus_5227#2 TTCCAGGACATTACCGGGCTTGGC--ACCGATATGA----ACGTGTGCCGCCGACATACT 399 * ** * * * * **** * * ** * * * * ** ** consensus_5227#0 AATCCGCCCTTCTGTTGG-CCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGG 570 consensus_5227#1 AATCCGCCCTTCTGTTGG-CCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGG 596 consensus_5227#2 GATCCGCCACCAGGTGGGACCTGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGC 459 ******* ** ** ** * ** ** ** * * * * * * consensus_5227#0 TAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCAT 630 consensus_5227#1 TAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG------------ 644 consensus_5227#2 GAGGG------------------------------------------------------- 464 ** consensus_5227#0 CAACGAAGCGGAAACGATTGGCGTTCGGGCGAAACGGCTGTGGCACGACCACCGAACGAC 690 consensus_5227#1 ------------------------------------------------------------ consensus_5227#2 ------------------------------------------------------------ consensus_5227#0 GGCACGAGCGCACCA 705 consensus_5227#1 --------------- consensus_5227#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||