These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence [GCAGAATCCCGAGGTTAAGCTGACGGCGAAATCATCGTCAACGATGGGTATCGGTCGAGGAGCACCAGGTAACGACGGCGATGGCTACGTCCTGACGATAGTTCCGATNCCCGGCGGCCCGGCAATCCGGCACGCGAAGTGCAAGAACGTCGCGTTCATTCAGCACGGTACTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACAGTGTGGCTGGGCAATGCCCTGTGGCAATACAAACTCCCGCCGCACATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACTTTAGCTGGCACGAGATCGGCTACTTCGGATCTGCCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTANCTCGTTCTTCATCATGACTTCGCTGCGGCGGAGTACAAANGAGCGCATCCGTCGATGCATGCGCTGGCTCCGGGTTGGGTTCATGAGCAATACTTGCGGTCCCCGTTCGTACCGGGCGTTCGTCCCTTCGTCGAACAGATTTGATTTGGTGATGCGGTATTGTTTGGGGTGTTAACGAAGTTCCTTGGCCAGCAGCGACCATGAATTGACGCTCGGNTGGGGCAAATGCTCTGCGCAGGATTGAGGCCCGCTTCCAAGAAGGTGTNCGGCCACAGTGTCCTCCCTGAATNGGGTGGATCAATCCNCGAGTATAACCNGCACACNNTGCCGGCATNTTGGCAANACACGGCGNCTCGTAACCAGTT] [+] EMBL AL933638 [GCAGAATCCCGAGGTTAAGCTGACGGCGAAATCATCGTCAACGATGGGTATCGGTCGAGGAGCACCAGGTAACGACGGCGATGGCTACGTCCTGACGATAGTTCCGATNCCCGGCGGCCCGGCAATCCGGCACGCGAAGTGCAAGAACGTCGCGTTCATTCAGCACGGTACTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACAGTGTGGCTGGGCAATGCCCTGTGGCAATACAAACTCCCGCCGCACATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACTTTAGCTGGCACGAGATCGGCTACTTCGGATCTGCCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTANCTCGTTCTTCATCATGACTTCGCTGCGGCGGAGTACAAANGAGCGCATCCGTCGATGCATGCGCTGGCTCCGGGTTGGGTTCATGAGCAATACTTGCGGTCCCCGTTCGTACCGGGCGTTCGTCCCTTCGTCGAACAGATTTGATTTGGTGATGCGGTATTGTTTGGGGTGTTAACGAAGTTCCTTGGCCAGCAGCGACCATGAATTGACGCTCGGNTGGGGCAAATGCTCTGCGCAGGATTGAGGCCCGCTTCCAAGAAGGTGTNCGGCCACAGTGTCCTCCCTGAATNGGGTGGATCAATCCNCGAGTATAACCNGCACACNNTGCCGGCATNTTGGCAANACACGGCGNCTCGTAACCAGTT] consensusID : consensus_5228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence [ANGCAGAATTGCCCGAGGTTATGCGCGCATACGGACTTCTGGGACTTTACTGGCACGAGATCGGCTACTTCGATCTG-CCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTAACTCGTTCTTCATCATGACTTCGCTGCGGCCGGAGTACAACGAGCGCAT-CGCTCGATGCATGCGCTGGCTCCGGTTGCGTTCATGAGCAATCTGCGGTCCCCGTTCGTCCGGGCGTTCGCTCCCTTCGTCGACCAGATTGATTGGCTGATGCGTATGTTAGGGTGTGAACGAGTTCCTGGCCAGCAGCCGACATGATGACGCTCGGTGGCCAAATGCTCTGCCAGGATGAGGGCCCGCTTCCAGNGAGGTGTGCGCCAACGTGCTCTATCCTGATNGGTGGATTCAACTCGCCGCCANNCTGAACCGCACCACTGCTGCCGGCCATTTCGGCC-ACACANCGGCCGGAGCCTCCGTTAAACCAGCTGGTCCACTACGCCCAGGGCTACAATTACGGGCCGCTTCCGGGCAAGTTNCGACTACGGACTTGACGCTGAACCTCATCCGGTACGGGTCTCGAATCCGGTCCCGCCAGGACNTATACGCTGGAACGGGTGA-CGCTCCGGCTCGCCACTTGACCTCACNGGTGACAACGATTGGCTAGCGGCCGTGTCGGACGTACGCCAGCTGCACTCCAGCATCCGCAACCCGATCGGACTGTTCCGCGTGTCCGATCCGGACTGGAACCATCTCGACTTCACCTGGGGCATCGATGCCGAC] [+] EMBL AL695897 [ANGCAGAATTGCCCGAGGTTATGCGCGCATACGGACTTCTGGGACTTTACTGGCACGAGATCGGCTACTTCGATCTG CCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTAACTCGTTCTTCATCATGACTTCGCTGCGGCCGGAGTACAACGAGCGCAT CGCTCGATGCATGCGCTGGCTCCGGTTGCGTTCATGAGCAATCTGCGGTCCCCGTTCGTCCGGGCGTTCGCTCCCTTCGTCGACCAGATTGATTGGCTGATGCGTATGTTAGGGTGTGAACGAGTTCCTGGCCAGCAGCCGACATGATGACGCTCGGTGGCCAAATGCTCTGCCAGGATGAGGGCCCGCTTCCAGNGAGGTGTGCGCCAACGTGCTCTATCCTGATNGGTGGATTCAACTCGCCGCCANNCTGAACCGCACCACTGCTGCCGGCCATTTCGGCC ACACANCGGCCGGAGCCTCCGTTAAACCAGCTGGTCCACTACGCCCAGGGCTACAATTACGGGCCGCTTCCGGGCAAGTTNCGACTACGGACTTGACGCTGAACCTCATCCGGTACGGGTCTCGAATCCGGTCCCGCCAGGACNTATACGCTGGAACGGGTGA CGCTCCGGCTCGCCACTTGACCTCACNGGTGA ] [+] EMBL BX627639 [ TACTTCGATCTGCCCGCCATGATCGATTACGCGCTCCAGTACACGGGACAGACGTCGCTCCAGTACGCCGGCCACTCGCAGGGCACTACCTCGTTCTTCATCATGACTTCGCTGCGGCCGGAGTACAACGAGCGCATCCGCTCGATGCATGCGCTGGCTCCGGTTGCGTTCATGAGCAATCTGCGGTCCCCGTTCGTCCGGGCGTTCGCTCCCTTCGTCGACCAGATTGATTGGCTGATGCGTATGTT GGGTGTGAACGAGTTCCTGCCCAGCAG CGACATGATGACGCTCGGTGGCCAAATGCTCTGCCAGGATGA GGCCCGCTTCCAG GAGGTGTGCGCCAACGTGCTCT TCCTGATTGGTGGATTCAACTCGCCG CA GCTGAACCGCACCA TGCTGCCGGCCATTTTGGCCAACACACCGGCCGGAGCCTCCGTT AACCAGCTGGTCCACTACGCCCAGGGCTACAATT CGGGCCGCTTCC GGC AGTT CGACTACGGAC TGACGCTGAACCTCATCCGCTAC GGT TCG ATCC GT CCGCCA GAC TATCCGCTGGACCGGGTGACCGCTCCGG TCG CAC TGCACT AC GGTGACAACGATTGGCTAGCGGCCGTGTCGGACGTACGCCAGCTGCACTCCAGCATCCGCAACCCGATCGGACTGTTCCGCGTGTCCGATCCGGACTGGAACCATCTCGACTTCACCTGGGGCATCGATGCCGAC] consensusID : consensus_5228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [TGCCCGAGGTTATGTTCATTCAGCACGGTCTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACGTGTGGCTGGGCAATGCCCGGGGCAATACAAATCCCGCGCAATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACCTTTAGCTGGCCACGAGATTCGGCTACTTCGGATCTGCCGCATGATCGATTAACGGCGCTCCAGGTACAACGGGACATGACGTCTGCTCCAGTACNGCCGGCCACTCGCCAGGGCCACTANCTCGGTATCTTCATCATTGACTTCGCTGCTGGCCTGGAGTTACAACGAGCTGCATCCTGCTCGATGCGATTGCTGCTGGCTCCGGTTGCGTTCATGAGCAATACTGTGGGTACCCCCCGGATATACCGTACCTGGGACGTTACAGGCTACCNCTATCGGTACCGGAACCAAGATTTGGATTATCGGGCTTGANTTGCCGGTTATTAGTACAGGGGTTGTAGAAACGGAGGTTTACCCCTTGNCCCAAGAGCAGGACGGAANCATTGGATTGACCTGGCNTACCGAGATTGGGCGCCAAAAATTGGCTACTTCCCAAGAGGAATTGAAAGGGCCCCGGCTATCACCAAGGAAGTGGTTGTAGCTGCCCAAACGTAGCGTCTATCCCTTGGAATATCTGGGTTGGGATTTCCAAATCGGCCCGGGCAG] [+] EMBL AL696384 [TGCCCGAGGTTATGTTCATTCAGCACGGTCTGCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGACGCCGGATACGACGTGTGGCTGGGCAATGCCCGGGGCAATACAAATCCCGCGCAATCTTCCACGATCCGGATGCGCGCAATACGGACTTCTGGGACCTTTAGCTGGCCACGAGATTCGGCTACTTCGGATCTGCCGCATGATCGATTAACGGCGCTCCAGGTACAACGGGACATGACGTCTGCTCCAGTACNGCCGGCCACTCGCCAGGGCCACTANCTCGGTATCTTCATCATTGACTTCGCTGCTGGCCTGGAGTTACAACGAGCTGCATCCTGCTCGATGCGATTGCTGCTGGCTCCGGTTGCGTTCATGAGCAATACTGTGGGTACCCCCCGGATATACCGTACCTGGGACGTTACAGGCTACCNCTATCGGTACCGGAACCAAGATTTGGATTATCGGGCTTGANTTGCCGGTTATTAGTACAGGGGTTGTAGAAACGGAGGTTTACCCCTTGNCCCAAGAGCAGGACGGAANCATTGGATTGACCTGGCNTACCGAGATTGGGCGCCAAAAATTGGCTACTTCCCAAGAGGAATTGAAAGGGCCCCGGCTATCACCAAGGAAGTGGTTGTAGCTGCCCAAACGTAGCGTCTATCCCTTGGAATATCTGGGTTGGGATTTCCAAATCGGCCCGGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5228#0 --GCAGAAT--CCCGAGGTTAAGCTGACG-GCGAAATCATCGTCAACGATGGGTATCGGT 55 consensus_5228#1 ANGCAGAATTGCCCGAGGTTATGCGCGCATACGGACTTCTGGGACTTTACTGGCACGAGA 60 consensus_5228#2 ------------------------------------------------------------ consensus_5228#0 CGAGGAGCACCAGGTAACGACGGCGAT-GGCTACGTCCTGACGATAGTTCCGATNCCCGG 114 consensus_5228#1 TCGGCTACTTCGATCTGCCGCCATGATCGATTACGCGCTC-CAGTACACGGGACAGACGT 119 consensus_5228#2 ---------------------TGCCCGAGGTTATGTTCATTCAGCACGGTCTGCTCTGCT 39 * ** * * * * consensus_5228#0 CGGCCCGGCAATCCGGC-ACGCGAAGTGCAAGAACGTCGCGTTCATTCAGCACGGTAC-T 172 consensus_5228#1 CGCTCCAGTACGCCGGCCACTCGCAGGGCACTAACT---CGTTC-TTCATCATGACTT-C 174 consensus_5228#2 CG-TCCGCCGACTGGGTCATTCTTGGACCGGGCAAAGCACTCGCCTACATGCTGGTCGAC 98 ** ** ** * * * * * * * * ** * consensus_5228#0 GCTCTGCTCGTCCGCCGACTGGGTCATTCTTGGAC-CGGGCAAAGCACTCGCCTACATGC 231 consensus_5228#1 GCTGCGGCCGGAGTACAACGAGCGCATCGCTCGATGCATGCGCTGGCTCCGGTTGCGTTC 234 consensus_5228#2 GCCGGATACGACGTGTGGCTGGGCAATGCCCGGGGCAATACAAATCCCGCGCAATCTTCC 158 ** ** * * ** * * ** * * * consensus_5228#0 -TGGTCGACGCCGGATACGACAGTGTGGCTGGGCAATGCCCTGTGGCAATACAAACTCCC 290 consensus_5228#1 ATGAGCAATCTGCGGTCC--CCGTTCGTCCGGGCGTT---------CGCTCCCTTCGTCG 283 consensus_5228#2 ACGATCCGGATGCGCGCAATACGGACTTCTGGGA----------------CCTTTAGCTG 202 * * * * * *** * consensus_5228#0 GCCGCACATCTTCCACGATCCGGATGC--GCGCAATACGGACTTCTGGGACTTTAGCTGG 348 consensus_5228#1 ACCAGATTGATTGGCTGATGCGTATGTTAGGGTGTGAACGAGTTCCTGGCCAGCAGCCGA 343 consensus_5228#2 GCCACGAGATTCGGCTACTTCGGATCT-GCCGCATGATCGATTAACGGCGCTCCAGGTAC 261 ** * * ** ** * * ** * * * ** consensus_5228#0 CACG----AGATCGGCTACT--TCGGATCTGCCGCCATGATCGATTACGCGCTCCAGTAC 402 consensus_5228#1 CATG----ATGACGCTCGGTGGCCAAATGCTCTGCCAGGAT-GAGGGCCCGCTTCCAGNG 398 consensus_5228#2 AACGGGACATGACGTCTGCTC-CAGTACNGCCGGCCACTCGCCAGGGC-CACTANC-TCG 318 * * * ** * * * **** * * * ** consensus_5228#0 ACGGGACAGACGGT-CGCTCCAGTACGCCGGCCACTCGCAGGGCACTANCTCGTTCTTCA 461 consensus_5228#1 AGGTGTGCGCCAACGTGCTCTATCCTGATNGGTGGATTCAACTCGCCGCC--ANNCTGAA 456 consensus_5228#2 GTATCTTCATCATTGACTTCGCTGCTGGCCTGGAGTTACAACGAGCTGCATCCTGCTCGA 378 * ** * ** * ** * consensus_5228#0 TCATGACTTCGCTGCGGCGGAGTACAAANGAGCGCATCCGTCGATGCATGCGCTGGCTCC 521 consensus_5228#1 CCGCACCACTGCTGCCGGCCATTTCGGCC--ACACANCGGCCGGAGCCTCCGTTAAACCA 514 consensus_5228#2 TGCGATTGCTGCTGGCTCCGGTTGCGTTCATGAGCAATACTGTGGGTACCCCCCGGATAT 438 **** * * ** * * consensus_5228#0 G--G-GTTGGGTTCAT---GAGCAATACTTGCGGTCCCCGTTCGTACCGG--GCGTTCGT 573 consensus_5228#1 GCTG-GTCCACTACGCCCAGGGCTACAATTACGGGCCGCTTCCGGGCAAGTTNCGACTAC 573 consensus_5228#2 ACCGTACCTGGGACGTTACAGGCTACCNCTATCGGTACCGGAACCAAGATTTGGATTATC 498 * * ** * * * * consensus_5228#0 CCCTTCGTCGAACAGATTTGATTTGGTGATGCGGTATTGTTTGGGG---TGTTAACGAAG 630 consensus_5228#1 GGACTTGACGC-TGAACCTCATCCGGT-ACG-GGTCTCGAATCCGG---TCCCGCCAGGA 627 consensus_5228#2 GGGCTTGANTTGCCGG--TTATTAGTACAGGGGTTGTAGAAACGGAGGTTTACCCCTTGN 556 * * * ** * * * * * * * * * * consensus_5228#0 TTCCTTGGCCAGCAGCGACCAT-GAATTGACGCTCGGNTGGGGCAAATGCTCTGCGCAGG 689 consensus_5228#1 CNTATACGCTGGAACGGGTGAC-GCTCCGGCTCGCCACTTGACCTCACNGGTGACAACGA 686 consensus_5228#2 CCCAAGAGCAGGACGGAANCATTGGATTGACCTGGCNTACCGAGAT-TGGGCGCCAAAAA 615 ** * * * * * * consensus_5228#0 ATTGAGGCCCGCTTCCAAGAAGGTGTNC-GGCCACAGTGT--CCTCCCTGAATNGGGTGG 746 consensus_5228#1 TTGGCTAGCGGCCGTGTCGGACGTACGCCAGCTGCACTCCAGCATCCGCAACCCGATCGG 746 consensus_5228#2 TTGGCTACTTCCCAAGAGGAATTGAAAGGGCCCCGGCTAT--CACCAAGGAAGTGGTTGT 673 * * * * * * * * * * * * consensus_5228#0 ATCAATCCNCGAGTATAACCNGCACACNNTGCCGGCATNTTGGCAANACACGGCGNCTCG 806 consensus_5228#1 ACTGTTCCGCGTGT----CCGATCCGGACTGGAACCATCTCGACTTCACCTGGGGCATCG 802 consensus_5228#2 AGCTGCCCAAACGTAGCGTCTATCC---CTTGGAATATCTGGGTTGGGATTTCCAAATCG 730 * ** ** * * * ** * * *** consensus_5228#0 TAACCAGTT- 815 consensus_5228#1 ATGCCGAC-- 810 consensus_5228#2 GCCCGGGCAG 740 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||