These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence [CCGCGAACGAACAGGAATCCCCTGAACAAAGGGCATAGGTTCTTAAGCGCGGTTCTCGCTCCCTATAGCAAGAGCTAATGCACCAAACGCGAGTGCATACGAATTTTGCGCCCTGGTGTGTGCCGGAAACCGCACGAACCTGTGAGGAACCTCTGGGATCTTCCAATGTTCTAGCATGAAAAGGGCGGGGAGTCACCCCCGTCACTGCAAACAAAATGCCTTCTGTAAACTGTGATCGAATCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCAC] [+] EMBL BM617567 [CCGCGAACGAACAGGAATCCCCTGAACAAAGGGCATAGGTTCTTAAGCGCGGTTCTCGCTCCCTATAGCAAGAGCTAATGCACCAAACGCGAGTGCATACGAATTTTGCGCCCTGGTGTGTGCCGGAAACCGCACGAACCTGTGAGGAACCTCTGGGATCTTCCAATGTTCTAGCATGAAAAGGGCGGGGAGTCACCCCCGTCACTGCAAACAAAATGCCTTCTGTAAACTGTGATCGAATCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAA ] [+] EMBL BM578013 [ ccgGTAAACTGTGATCGAATCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCAC] consensusID : consensus_5230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [AGCAGAATTCCCGAGGTTATGATCGAATTCTCGTGTTCTTATTCATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTATATTTGCTTTGATCAAGTACTGATCTGTCAATGGTTAGGAATATCCATGGGTGCTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTAAGCCATTTAGTTGTANNACATCTTTTTCTTTAAAGTATTACCAGCGGGCCTGTGANCTAAAACGGTGTGTGTTGTGTACGATCGAAACGTNCTGCATAAATTTGCGACATATTTACCCGGACCTGAGCNGAGAAACATCGGGAAAANAGGATGGCAGCAATTTTAGAGAAGCGCGAGAGAAGCGTGGGNGCACGNTGTTCCTGTCNAGGCAGATNGAACCCGGCAGAATGAAGACCGATTCGAATAAAGCACNTCTCTATATAAAAGTATANCAACGATGTAGGGNCTACAATACCTAAATACAATGAACCACCACACCCTATGCTGCAACACACGATGAAAACGC] [+] EMBL AL696128 [AGCAGAATTCCCGAGGTTATGATCGAATTCTCGTGTTCTTATTCATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTATATTTGCTTTGATCAAGTACTGATCTGTCAATGGTTAGGAATATCCATGGGTGCTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTAAGCCATTTAGTTGTANNACATCTTTTTCTTTAAAGTATTACCAGCGGGCCTGTGANCTAAAACGGTGTGTGTTGTGTACGATCGAAACGTNCTGCATAAATTTGCGACATATTTACCCGGACCTGAGCNGAGAAACATCGGGAAAANAGGATGGCAGCAATTTTAGAGAAGCGCGAGAGAAGCGTGGGNGCACGNTGTTCCTGTCNAGGCAGATNGAACCCGGCAGAATGAAGACCGATTCGAATAAAGCACNTCTCTATATAAAAGTATANCAACGATGTAGGGNCTACAATACCTAAATACAATGAACCACCACACCCTATGCTGCAACACACGATGAAAACGC] consensusID : consensus_5230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CCGCCCACGCGTCCGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCACCAACCCTTTGATGCAGACGACGATAGCAAAAACAAAAACACACACTGCATTAAAAGCAACATTCTCTTGCATC] [+] EMBL BM619784 [CCGCCCACGCGTCCGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCACCAACCCTTTGATGCAGACGACGATAGCAAAAACAAAAACACACACTGCATTAAAAGCAACATTCTCTTGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5230#0 CCGCGAACGAACAGGAATCCCCTGAACAAAGGGCATAGGTTCTTAAGCGCGGTTCTCGCT 60 consensus_5230#2 ------------------------------------------------------------ consensus_5230#1 ------------------------------------------------------------ consensus_5230#0 CCCTATAGCAAGAGCTAATGCACCAAACGCGAGTGCATACGAATTTTGCGCCCTGGTGTG 120 consensus_5230#2 ------------------------------------------------------------ consensus_5230#1 ------------------------------------------------------------ consensus_5230#0 TGCCGGAAACCGCACGAACCTGTGAGGAACCTCTGGGATCTTCCAATGTTCTAGCATGAA 180 consensus_5230#2 ------------------------------------------------------------ consensus_5230#1 ------------------------------------------------------------ consensus_5230#0 AAGGGCGGGGAGTCACCCCCGTCACTGCAAACAAAATGCCTTCTGTAAACTGTGATCGAA 240 consensus_5230#2 ------------------------------------------------------------ consensus_5230#1 ---------------------------------AGCAGAATTCCCGAGGTTATGATCGAA 27 consensus_5230#0 TCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGA 300 consensus_5230#2 ------------------------------------------------CCGCCCACGCG- 11 consensus_5230#1 T-TCTCGTGTTCTTA--TTCATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGA 84 * *** * * consensus_5230#0 CTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATG 360 consensus_5230#2 ---TCCGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATG 68 consensus_5230#1 CTTTTTGCTCACGGAGGCCAA-GTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATG 143 * *************** ************************************** consensus_5230#0 GACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTA 420 consensus_5230#2 GACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTA 128 consensus_5230#1 GACACACGCACACATGG-GAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTT---- 198 ***************** ************************************** consensus_5230#0 GTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGT 480 consensus_5230#2 GTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGT 188 consensus_5230#1 ATATTTGCTTTGATCAA-GTACTGAT-CTGTC--AATGGTTA--GGAATATCCATG---- 248 **************** ******** **** ***** ** *********** consensus_5230#0 GCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAA 540 consensus_5230#2 GCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAA 248 consensus_5230#1 GGTGCTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAA 308 * * ******************************************************* consensus_5230#0 ACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTT-CTTTAAAGTA 599 consensus_5230#2 ACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTT-CTTTAAAGTA 307 consensus_5230#1 ACTTTGAGCGCTCTACTGTATTAAGCCATTTAGTTGTANNACATCTTTTTCTTTAAAGTA 368 ********************** *************** ********* ********** consensus_5230#0 TT-CCAGCGG-CCTGTGAGCTAAAC--GTGTGTGT-GTGTA-GATCGAAACGTCCTGCAT 653 consensus_5230#2 TT-CCAGCGG-CCTGTGAGCTAAAC--GTGTGTGT-GTGTA-GATCGAAACGTCCTGCAT 361 consensus_5230#1 TTACCAGCGGGCCTGTGANCTAAAACGGTGTGTGTTGTGTACGATCGAAACGTNCTGCAT 428 ** ******* ******* ***** ******** ***** *********** ****** consensus_5230#0 AAATT-GCAACATATTTTCCCGGAC-TGAGCAGAGAAAC-TCGGGAAAAG--GATGG--A 706 consensus_5230#2 AAATT-GCAACATATTTTCCCGGAC-TGAGCAGAGAAAC-TCGGGAAAAG--GATGG--A 414 consensus_5230#1 AAATTTGCGACATATTTACCCGGACCTGAGCNGAGAAACATCGGGAAAANAGGATGGCAG 488 ***** ** ******** ******* ***** ******* ********* ***** consensus_5230#0 CAATTT-AGAGA-GCGCGAGAGA-GCGTTGGCGCACGTTGTTC-TGTCGAGGCAGATTGA 762 consensus_5230#2 CAATTT-AGAGA-GCGCGAGAGA-GCGTTGGCGCACGTTGTTC-TGTCGAGGCAGATTGA 470 consensus_5230#1 CAATTTTAGAGAAGCGCGAGAGAAGCGTGGGNGCACGNTGTTCCTGTCNAGGCAGATNGA 548 ****** ***** ********** **** ** ***** ***** **** ******** ** consensus_5230#0 ACC-GGCAGACTGAAG--CGATTCGAATAC-GCACTCTTTTTTA----AGTATAC----A 810 consensus_5230#2 ACC-GGCAGACTGAAG--CGATTCGAATAC-GCACTCTTTTTTA----AGTATAC----A 518 consensus_5230#1 ACCCGGCAGAATGAAGACCGATTCGAATAAAGCACNTCTCTATATAAAAGTATANCAACG 608 *** ****** ***** *********** **** * * ** ****** consensus_5230#0 ATGTGTAGGCTACAAT-CCTAATACGAATGAACCCAC----------------------- 846 consensus_5230#2 ATGTGTAGGCTACAAT-CCTAATACGAATGAACCCACCAACCCTTTGATGCAGACGACGA 577 consensus_5230#1 ATGTAGGGNCTACAATACCTAAATACAATGAACCACCACACCCTATGCTGCAACACACGA 668 **** * ******* ***** ******** * consensus_5230#0 -------------------------------------------------- consensus_5230#2 TAGCAAAAACAAAAACACACACTGCATTAAAAGCAACATTCTCTTGCATC 627 consensus_5230#1 TGAAAACGC----------------------------------------- 677 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||