These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1218 fasta sequence [CAACAACAACAATGTCATTAAGACATCCGTAGCATTGTTGAATGTCTCCCTTATTGTTATTTTATACTCCTTATAGTTATAGTATTTCTTCTACCTTTTTCTCGAGGTCGCTGTTGTCGGCGCTCCTCTGCAGCTCCAGGATCTCGATTTGCTGATCCTCGACGTCCTTCTCATTCGGGATGTACGGCCCGATATATTCGCCGTCCTCATCAAAATTTCTTAGTCCGTGCCAGGTGCCCATCTTCTTTGCTCGGCTGATAGTTGGTTTAAGCTGTTGGGCGGCTTCCGGCTATCGTTTGCTGGTGGGCGGCGTGCGTCTTGCTGTTAGGCGTTTTGCTGTGGACGTCTCTTTGTAGGCAGCTTGCAGTTGTCGTCTGATTAACACTTGATCGGCACTTTGTCTTTTATACCCGTTTGTCACTTCACTATTATTCTTTTTTCTGCTATTTATTGGGGCAAAAACAACACCTTTAAAGCTTGTTTTGCGCCTGATTTTCACTATTTTGTAAACTATTTTGAGCGCTTTTGAAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGTGTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGACCTATAACTCATATTTTTGTTATGGCTAAATAAATACACGTGCTCACTATTATTTTCCTTTTGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTTTAGGTACTTGATACTTGTACGCAAGAATGTGTTTTTGCTAATTTTTGAAAATTGTACCACTTTTAGAGTACACAGTTATTTTACACGTTTGGTGTCACCTTATAGCTCAAACTGCACCACTCGCACTTTGTTGAAAACTGATTATAATAGCGGAGAAAGAAAAATGTAGGAAATATTTAAAATAGACATCCTAGCGAGGCAAACGTGTACAATATCCAAAATAGAAAACCCTTCAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAACACAGTGGCCTTAATCTCACTAACACAAACCAAGAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAGTATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAA] [+] EMBL BX607728 [CAACAACAACAATGTCATTAAGACATCCGTAGCATTGTTGAATGTCTCCCTTATTGTTATTTTATACTCCTTATAGTTATAGTATTTCTTCTACCTTTTTCTCGAGGTCGCTGTTGTCGGCGCTCCTCTGCAGCTCCAGGATCTCGATTTGCTGATCCTCGACGTCCTTCTCATTCGGGATGTACGGCCCGATATATTCGCCGTCCTCATCAAAATTTCTTAGTCCGTGCCAGGTGCCCATCTTCTTTGCTCGGCTGATAGTTGGTTTAAGCTGTTGGGCGGCTTCCGGCTATCGTTTGCTGGTGGGCGGCGTGCGTCTTGCTGTTAGGCGTTTTGCTGTGGACGTCTCTTTGTAGGCAGCTTGCAGTTGTCGTCTGATTAACACTTGATCGGCACTTTGTCTTTTATACCCGTTTGTCACTTCACTATTATTCTTTTTTCTGCTATTTATTGGGGCAAAAACAACACCTTTAAAGCTTGTTTTGCGCCTGATTTTCACTATTTTGTAAACTATTTTGAGCGCTTTTGAAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGTGTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGACCTATAACTCATATTTTTGTTATGGCTAAATAAATACACGTGCTCACTATTATTTTCCTTTTGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTTTAGGTACTTGATACTTG ] [+] EMBL BM598692 [ ccgTTTGAAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGTGTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGGCCTATAACTTATATTTTTGTTATGGATAAATAAATACACGCGCTCACTATTATTTTCCTTTTGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTTTAGGTACTTGATACTTGTACGCAAGAATGTGTTTTTGCTAATTTTTGAAAATTGTACCACTTTTAGAGTACACAGTTATTTTACACGTTTGGTGTCACCTTATAGCTCAAACTGCACCACTCGCACTTTGTTGAAAACTGATTATAATAGCGGAGAAAGAAAAATGTAGGAAATATTTAAAATAGACATCCTAGCGAGGCAAACGTGTACAATATCCAAAATAGAAAACCCTTCAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAACACAGTGGCCTTAATCTCACTAACACAAACCAAGAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAGTATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAA] consensusID : consensus_5239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1147 fasta sequence [CAAGAATTGCCGAGGTTTAACAGTTGCTGGCAGAAAGCACCNATGTAGGAACATCATTCTACACATCAGCACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACANAATATTTTAGAGCAACGCGATCCAAGCAAGAGCANTTTCATTTGCGCTCAAGCAAATCATCAGTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATTACTAATAAACGATNNTAAACCATTACATCTAACAATCTAANTTATNAANNNACCTATTATAANCCATTGCATCAAAAGAACAATCAAGTGCTTACTNTGGAACCAAGGATTATGTTAGCAGGTCAAAACAAGCAAGGACACCTTAGTTCTACATTGGNTCCTCAAACTCCTTAATGGAAACCTTATTGNACACTCATCCANAACCNANATNTTCATTGCACAGGTANAACACAAGGNACCCAACGTTACAGTGGACCTCCAAGAAAAGAATCAACTCTACACAGGAAACAATACACCAGANGGTCTCACACTCACATGGGAAGNACTCTCATTGGAAAAGAGAGCAATTAATTAACACATTAAATTCCAAGCAACAANAGTNACCAACTAAAAACTTATGGTACACNNAGGCCCCACACGCGATCAATTCCACAATGGACTTGGTAAACCGNTTATGGCCCAGCACAACTCAATTACTTGCCNGCACGGGCATTGCTAAANCAANTTGGCTACANGCATNACAGCCGGTAAAGNCAATATGCANACATTCAAATTGGGATTATTGGACCCTTNTGGTACAACAGNACNAGGTCCATNTGGGCCCAAAGCTTGGGCCAGCCTNACGAAAATCAAANTGGCCCACAAATCAAACACCGAAAACAACNCGGTTAGACACTTCNACAANTCCACAACACGGGCAGAAAAGGGGCCAACCGTTCCCCCACCCGAGGATACCNACCTTCATCCCCTCTTCTGGGCGNAGCGGGACTAATCACTAAGAGCGTCGNCGACACACAAACCTATTACCCAACTGCGACCCACAATNAGACGATGGAAGCCCAGNNAAANAACTATCGGTCTACACCGAGANCAGGCNCTNTCCACACGCAGTATANCC] [+] EMBL AL696431 [CAAGAATTGCCGAGGTTTAACAGTTGCTGGCAGAAAGCACCNATGTAGGAACATCATTCTACACATCAGCACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACANAATATTTTAGAGCAACGCGATCCAAGCAAGAGCANTTTCATTTGCGCTCAAGCAAATCATCAGTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATTACTAATAAACGATNNTAAACCATTACATCTAACAATCTAANTTATNAANNNACCTATTATAANCCATTGCATCAAAAGAACAATCAAGTGCTTACTNTGGAACCAAGGATTATGTTAGCAGGTCAAAACAAGCAAGGACACCTTAGTTCTACATTGGNTCCTCAAACTCCTTAATGGAAACCTTATTGNACACTCATCCANAACCNANATNTTCATTGCACAGGTANAACACAAGGNACCCAACGTTACAGTGGACCTCCAAGAAAAGAATCAACTCTACACAGGAAACAATACACCAGANGGTCTCACACTCACATGGGAAGNACTCTCATTGGAAAAGAGAGCAATTAATTAACACATTAAATTCCAAGCAACAANAGTNACCAACTAAAAACTTATGGTACACNNAGGCCCCACACGCGATCAATTCCACAATGGACTTGGTAAACCGNTTATGGCCCAGCACAACTCAATTACTTGCCNGCACGGGCATTGCTAAANCAANTTGGCTACANGCATNACAGCCGGTAAAGNCAATATGCANACATTCAAATTGGGATTATTGGACCCTTNTGGTACAACAGNACNAGGTCCATNTGGGCCCAAAGCTTGGGCCAGCCTNACGAAAATCAAANTGGCCCACAAATCAAACACCGAAAACAACNCGGTTAGACACTTCNACAANTCCACAACACGGGCAGAAAAGGGGCCAACCGTTCCCCCACCCGAGGATACCNACCTTCATCCCCTCTTCTGGGCGNAGCGGGACTAATCACTAAGAGCGTCGNCGACACACAAACCTATTACCCAACTGCGACCCACAATNAGACGATGGAAGCCCAGNNAAANAACTATCGGTCTACACCGAGANCAGGCNCTNTCCACACGCAGTATANCC] consensusID : consensus_5239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [GGCCAAGAATCNCGCACGAGTGCAGAACAGTTGCTGGAGAAAGACAAAATGTAGGAAATATTCAAAATAGACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAATATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAACAAGATTATGTAGAGTTTAACAGCAGAACTAGTTATGATACTAAATCTTATGAACCTATGAACTATCAAACAATTTATGAAGTAAAAAGACCAAGTAAGTGACTCAGAAAGAATAAGTTAAAGAAAATAAAGAGTTAACGTAATGGAGATCATGAAGGAGCATATACAGTAATCAGAAAATAAACTNAAAATTGTAAGCCAACGATAATCAATGATGTTAGTTGCAGGAAATATATGCAGAGGATGTAAAACTGNTAGATAGCGTAGAATGCAACATAATGAGTATGAACTTGTGAAAGACNGATCATGCAAACTGAAGCTAGGATAACATGGCNNAGATTAGACNCGACAAACGGTNGGCAGTCGAGATCCAACAGGGAGAAANGGGCAAGTTCCAAGCAAGGTACATCTGATCNNTCATTGG] [+] EMBL BX468235 [GGCCAAGAATCNCGCACGAGTGCAGAACAGTTGCTGGAGAAAGACAAAATGTAGGAAATATTCAAAATAGACATCCTAGCGAGGCAAACATGTACAATATCCAAAATAGAAAACCCTTTAGCACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTATTGCGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAATACAGTGGCCTTAATCTCACTAACACAAACCAATAATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAATATATAAACATTGATCAAAAGAACAATCAAGTGCTACTTGAACAAGATTATGTAGAGTTTAACAGCAGAACTAGTTATGATACTAAATCTTATGAACCTATGAACTATCAAACAATTTATGAAGTAAAAAGACCAAGTAAGTGACTCAGAAAGAATAAGTTAAAGAAAATAAAGAGTTAACGTAATGGAGATCATGAAGGAGCATATACAGTAATCAGAAAATAAACTNAAAATTGTAAGCCAACGATAATCAATGATGTTAGTTGCAGGAAATATATGCAGAGGATGTAAAACTGNTAGATAGCGTAGAATGCAACATAATGAGTATGAACTTGTGAAAGACNGATCATGCAAACTGAAGCTAGGATAACATGGCNNAGATTAGACNCGACAAACGGTNGGCAGTCGAGATCCAACAGGGAGAAANGGGCAAGTTCCAAGCAAGGTACATCTGATCNNTCATTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5239#1 ------CAAGAATTGC---CGAG-GTTTAACAGTTGCTGGCAGAAAGCACCNATGTAGGA 50 consensus_5239#2 ---GGCCAAGAATCNCGCACGAGTGCAGAACAGTTGCTGGAGAAAGACAA-AATGTAGGA 56 consensus_5239#0 CAACAACAACAATGTCAT-TAAGACATCCGTAGC-ATTGTTGAATGTCTCCCTTATTGTT 58 *** *** * ** ** ** * * * * * consensus_5239#1 ACATCATTCTACACATCAGCACATCCTAGCGAGGCAAACATGTACAATATC--CAAAATA 108 consensus_5239#2 AA--TATTCAAAATAG----ACATCCTAGCGAGGCAAACATGTACAATATC--CAAAATA 108 consensus_5239#0 ATTTTATACTCCTTATAGTTATAGTATTTCTTCTACCTTTTTCTCGAGGTCGCTGTTGTC 118 * ** * * * * * * * * * ** * consensus_5239#1 GAAAACCCTTTAGCACANAATATTTTAGAGCAACGCGATCCAAGCAAGAGCANTTTCATT 168 consensus_5239#2 GAAAACCCTTTAGCACAAA-TATTTTAGAGCAACGCGATCCAAG-AAGAGCAATTTA--T 164 consensus_5239#0 GGCGCTCCTCTGCAGCTCCAGGATCTCGATTTGC-TGATCCTCG--ACGTCCTTCTCATT 175 * *** * * * * ** * ***** * * * * * * consensus_5239#1 TG-------CGCTCAAGCAAATCATCAG-TCTCAGAAGAAACAGAAAATACAGT---GGC 217 consensus_5239#2 TG-------CGCTCAAGCAAATCATCAGCTCTCAGAAGAAACAGAAAATACAGT---GGC 214 consensus_5239#0 CGGGATGTACGGCCCGATATATTCGCCGTCCTCATCAAAATTTCTTAGTCCGTGCCAGGT 235 * ** * * ** * * **** * ** * * * ** consensus_5239#1 CTTAATCTCACTAACACAAACCAATAATGATT---ACTAATAAACGATNNTAAACCATTA 274 consensus_5239#2 CTTAATCTCACTAACACAAACCAATAATGAT----ACTAATAAACGATATAAAA--ATTA 268 consensus_5239#0 GCCCATCTTCTTTGCTCGGCTGATAGTTGGTTTAAGCTGTTGGGCGGCTTCCGGCTAT-- 293 **** * * * * ** * ** * ** ** consensus_5239#1 CATCTAACAATCTAANTTATNAANNNACCTATTATAANCCATTGCATCAAAAGAACAATC 334 consensus_5239#2 CATCTA-CAATCTAAATTATAAAAAA---TAT-ATAAAC-ATTG-ATCAAAAGAACAATC 321 consensus_5239#0 CGTTTGCTGGTGGGCGGCGTGCGTCTTGCTGT--TAGGCGTTTTGCTGTGGACGTCTCTT 351 * * * * * * * ** * ** * * * * consensus_5239#1 AAGTGCTTACTNTGGAACCAAGGATTATGTTAGCAGGTCAAAACAAGCAAGGACACCTTA 394 consensus_5239#2 AAGTGCT-ACTT--GAAC--AAGATTATGTAG--AGTTTAACAGCAGAA--------CTA 366 consensus_5239#0 TGTAGGCAGCTT--GCAGTTGTCGTCTGATTAACACTTGATCGGCACTTTGTCTTTTATA 409 * ** * * * * * * * * ** consensus_5239#1 GTTCTACATTGGNTC-CTCAAACTCCTTAATGGAAACCTTATTGNACACTCATCCANAAC 453 consensus_5239#2 GTTAT------GATA-CTAAATCTTATGAACCTATGAACTATCAAACA---ATTTATGAA 416 consensus_5239#0 CCCGTTTGTCACTTCACTATTATTCTTTTTTCTGCTATTTATTGGGGCAAAAACAACACC 469 * * ** * * *** * * consensus_5239#1 CNANATNTTCATTGCACAGGTANAACACAAGGNACCCAACGTTACAGTGGACCTCCAAGA 513 consensus_5239#2 GTAAAAAG--ACCAAGTAAGTGACTCAGAAAGAAT---AAGTTAAAGAAAAT-------- 463 consensus_5239#0 TTTAAAGCTTGTTTTGCGCCTGATTTTCACTATTTTGTAAACTATTTTGAGCGCTTTTG- 528 * * * * ** consensus_5239#1 AAAGAATCAACTCTACACAGGAAACAATACACCAGANGGTCTCACACTCACATG---GGA 570 consensus_5239#2 AAAGAGTTAACGTAAT---GGAGATCATGAAGGAGCATATACAGTAATCAGA-----AAA 515 consensus_5239#0 AAATAACAATCAGGGCGATCAGAGTCATAATTAGGTTAAGTTTGAACTCGTGTGCTTCGT 588 *** * * * ** * * ** consensus_5239#1 AGNACTCTCATTGGAAAAGAGAGCAATTAATTAACACATTAAATTCCAAGCAACAANAGT 630 consensus_5239#2 TAAACTNAAAATTGTAA-GCCAACGAT-AATCAATGATGTTAGTTGCAGGAAATATATGC 573 consensus_5239#0 GTTGTTCGGTTTGTATATTTTGGCCCTTAACGCCTGTGTCTGGTTTTGAGTTATCGTGAC 648 * * * * * ** ** * * consensus_5239#1 NACCAACTAAAAACTTATGGTACACNNAGGCCCCACACGCGATCAATTCCACAATGGACT 690 consensus_5239#2 AGAGGATGTAAAACTGNTAGATAGCGTAGAATGCA-ACATAATGAGT------ATGAACT 626 consensus_5239#0 CTATAACTCATATTTTTGTTATGGCTAAATAAATACACGTGCTCACTATTATTTTCCTTT 708 * * * * * * * ** * * * * * consensus_5239#1 TG---GTAAACCGNTTATGGCCCAGCACAACTCAATTACTTGCCNGCACGGGCATTGCTA 747 consensus_5239#2 TGT-GAAAGACNGATCATG--CAAACTGAAGCTAG------GATAACATGGCNNAGATTA 677 consensus_5239#0 TGCTGACACTGCACTTTCACTTCCGTTGATTTTTTTCTCTCTTCCCTCTAAACTGCTTTT 768 ** * * * * consensus_5239#1 AANCAANTTGGCTACANGCA--TNACAGC-CGGTAAAGNCAATATGCANACATT----CA 800 consensus_5239#2 GACNCGACAAACGGTNGGCAGTCGAGATC-CAACAGGGAGAAANGGGCAAGTTC----CA 732 consensus_5239#0 TAGGTACTTGA-TACTTGTACGCAAGAATGTGTTTTTGCTAATTTTTGAAAATTGTACCA 827 * * * * * * ** * * ** consensus_5239#1 AATTGGGATTATTGGACCCTTN--TG-GTACAACAGNACNAGGTCCATNTGGGCCCAAAG 857 consensus_5239#2 AGCAAGGTACATCTGATCNNTCATTG-G-------------------------------- 759 consensus_5239#0 CTTTTAGAGTACACAGTTATTTTACACGTTTGGTGTCACCTTATAGCTCAAACTGCACCA 887 * * * * consensus_5239#1 CTTGGGCCAGCCTNACGAA-AATCAAANTGGCCCACAAATCAAA-CACCGAAAACAACNC 915 consensus_5239#2 ------------------------------------------------------------ consensus_5239#0 CTCGCACTTTGTTGAAAACTGATTATAATAGCGGAGAAAGAAAAATGTAGGAAATATTTA 947 consensus_5239#1 GGTTAGACACTTCNACAANTCCACAACACGGGCAGAAAAGGGGCCAACCGTTCCCCCACC 975 consensus_5239#2 ------------------------------------------------------------ consensus_5239#0 AAATAGACATCCTAGCGAGGCA--AACGTGTACAATATCCAAAATAGAAAACCCTTCAGC 1005 consensus_5239#1 CGAGGATACCNACCTTCATCCCCTCTTCTGGGCGNAGCGGGACTAATCACTAAGAGCGTC 1035 consensus_5239#2 ------------------------------------------------------------ consensus_5239#0 ACAAATATTTTAGAGCAACGCGATCCAAGAAGAGCAATTTA--TTGCGCTCAAGCAAATC 1063 consensus_5239#1 GNCGACACACAAACCTATTACCCAACTGCG-ACCCACAATNAGACGATGGAAGCCCAGNN 1094 consensus_5239#2 ------------------------------------------------------------ consensus_5239#0 ATCAGCTCTCAGAAGAAACAGAAAACACAGTGGCCTTAATCTCACTAACACAAACCAAGA 1123 consensus_5239#1 AAANAACTATCGGTCTACACCGAGANCAGGCNCTNTCCACACGCAGTATANCC------- 1147 consensus_5239#2 ------------------------------------------------------------ consensus_5239#0 ATGATACTAATAAACGATATAAAAATTACATCTACAATCTAAATTATAAAAAGTATATAA 1183 consensus_5239#1 ----------------------------------- consensus_5239#2 ----------------------------------- consensus_5239#0 ACATTGATCAAAAGAACAATCAAGTGCTACTTGAA 1218 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||