These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence [AGCAGATCCCGAGTTATGCAGGATAATAACACCGGACGGNATCTAATCGATCCTTCCATTAGCTCCGATTTCTTCGCGATGCTACGTACGAGCTGTCCGTCATTCTGGGGCAAATGTCCGGCCGATATGGTCGCCACGCTGAAACGGACGCAACTGTATCTTCGACAAAGGCGGCTCATACGGAAGCTGGACAATTTTGGGACCAAGCCACTGCATTCAAAANCAGTGCCCACGGTCTAATTGCCATACGGAACGCGGGTCGTCACTCTCTGTGTTCAACATTCCGACACACCAACGGTACGCATACGCACGATCTTGGCACGAGGAGTACGGGCGCGAATGTGGACATCTTACGCCNAGGGCGAATCTATCGGGCAGGACCGTTATCCCCGAAGCCCGGTCAAGAGGATACACCTTGNACANTGCTTGGAGCAACCGAAGGGTCAGCNTTGCTTTGGCCGACACCGGCGTTACCCGGCAANGGGCACGGTTGCACGCAAAAGCAGTGAATNCGCCGACAGTGGACGACAGCGGCAAGNAAGGACCTACACNGACAAACGGTTGGTTNCCCAAGGTANCGAAATAACCCGGGACCATGGGNATNTANCGTAATTCCCCGTATGTCCCNCACAGAACGTTGNCAGCCAGGGAAGAGNAAACTACGAACAACCCGGANGNGAATTAACTAACNGCACACCCGCAANACGTTTNGTTANACAANCAGCCCGCCAAACAATCAGCGTCGNTTAGGTGGGGCTTCACTGNACAATTCNCACGTCCAAAACGTGTTNNGCAAAACCATTNAAGTCGACAAGTNATTNATAACTATATTAACACAGGGGTTGCTCAAACACCATTACTNGGAAACAANCGGACNNAANNNGCCCTTGTGTATGAGCCCCCTNGCGAATGCAACTCTGCTAGCTGGCNATAGNGGACNAANGCCAAAGAATGCCAAAGACCAAACGAAACAACGACGGTGGTAACAAAGAGTGGGATCGGNTTGTCAANNTCACGNGGGGAACTT] [+] EMBL AL696492 [AGCAGATCCCGAGTTATGCAGGATAATAACACCGGACGGNATCTAATCGATCCTTCCATTAGCTCCGATTTCTTCGCGATGCTACGTACGAGCTGTCCGTCATTCTGGGGCAAATGTCCGGCCGATATGGTCGCCACGCTGAAACGGACGCAACTGTATCTTCGACAAAGGCGGCTCATACGGAAGCTGGACAATTTTGGGACCAAGCCACTGCATTCAAAANCAGTGCCCACGGTCTAATTGCCATACGGAACGCGGGTCGTCACTCTCTGTGTTCAACATTCCGACACACCAACGGTACGCATACGCACGATCTTGGCACGAGGAGTACGGGCGCGAATGTGGACATCTTACGCCNAGGGCGAATCTATCGGGCAGGACCGTTATCCCCGAAGCCCGGTCAAGAGGATACACCTTGNACANTGCTTGGAGCAACCGAAGGGTCAGCNTTGCTTTGGCCGACACCGGCGTTACCCGGCAANGGGCACGGTTGCACGCAAAAGCAGTGAATNCGCCGACAGTGGACGACAGCGGCAAGNAAGGACCTACACNGACAAACGGTTGGTTNCCCAAGGTANCGAAATAACCCGGGACCATGGGNATNTANCGTAATTCCCCGTATGTCCCNCACAGAACGTTGNCAGCCAGGGAAGAGNAAACTACGAACAACCCGGANGNGAATTAACTAACNGCACACCCGCAANACGTTTNGTTANACAANCAGCCCGCCAAACAATCAGCGTCGNTTAGGTGGGGCTTCACTGNACAATTCNCACGTCCAAAACGTGTTNNGCAAAACCATTNAAGTCGACAAGTNATTNATAACTATATTAACACAGGGGTTGCTCAAACACCATTACTNGGAAACAANCGGACNNAANNNGCCCTTGTGTATGAGCCCCCTNGCGAATGCAACTCTGCTAGCTGGCNATAGNGGACNAANGCCAAAGAATGCCAAAGACCAAACGAAACAACGACGGTGGTAACAAAGAGTGGGATCGGNTTGTCAANNTCACGNGGGGAACTT] consensusID : consensus_5241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [CCGGCAGGATTAAATAACACCCGGCACGGCATCCTGACCGATCCTTCCACTAGCTCCGATTACTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTCGACACACCACCGTCCGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAACAAGACTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAATCGAAGCGGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG] [+] EMBL BM582069 [CCGGCAGGATTAAATAACACCCGGCACGGCATCCTGACCGATCCTTCCACTAGCTCCGATTACTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGATAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTCGACACGCCACCGTCCGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAACAAGACTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAATCGAAGCGGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG] [+] EMBL BM635165 [ ccgCGGTATCCTGATCGATCCTTCCATTAGCTCCGATTTCTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTTGACACACCACCGTCCGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAACAAGACTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAAACGAAGCGAAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGTTTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG] [+] EMBL BM641254 [ cCGGCAAATGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAGGCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCGCCCACGGTCTAGTGCATCGGACGGGGTCGTACTTTGTGTTCAAATTCGACACACCACCGTCTGCCATCGACGATCTGGACGAGGAGTACGGGCGCGATGTGGACATCGTACGCAAGCGAATCTATCGGGCGGACGTTTCGCAACAGGAAGAGATCACCTGCACGCTGCACGAGGAGCTGCTGCCGCCCGCGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGCCGAGCGCAATAAGGCTAAGAAAGTGTTCCAGTACAATACCGGGCTGGATTATTATCCTTTCCAGAAGTGAGCGGGGCAAATCGAAGCGGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATTTTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5241#0 AGCAGATCCCGAGTTATGCAGGAT--AATAACACCGG--ACGGNATC-TAATCGATCCTT 55 consensus_5241#1 --------------CCGGCAGGATTAAATAACACCCGGCACGGCATCCTGACCGATCCTT 46 ******* ********* * **** *** * * ******** consensus_5241#0 CCATTAGCTCCGATTTCTTCGCGATGC-TACGTACGAGCTGTCCGTCATTCTGGGGCAAA 114 consensus_5241#1 CCACTAGCTCCGATTACTCCGCGATGCCTACGTACGAGCTGTCCGTCATTCTGCGGCAAA 106 *** *********** ** ******** ************************* ****** consensus_5241#0 TGTCCGG--CCGATATGGTCGCCACGCTGAAACGGAC-GCAACTG-TATCTTCGACAAAG 170 consensus_5241#1 TGTCCCGGCCCGATATGGTCGCCACGCTGAAACGGACCGCAACTGCTATCTTCGACAAAG 166 ***** * **************************** ******* ************** consensus_5241#0 GCGGC-TCATACGGAAGCTGGACAATTTTGGGACCAAGCCACTGC-ATTCAAAANCAGTG 228 consensus_5241#1 GCGGCATCATACGGAAGCTGGACAATTTGGGCACCAAGCCACTGCCATTCAAAACCAGCG 226 ***** ********************** ** ************* ******** *** * consensus_5241#0 CCCACGGTCTAATTGCCATACGGAACGCGGGTCGTCACTCTCTGTGTTCAACATTCCGAC 288 consensus_5241#1 CCCACGGTCTAGT----GCATCGGACG-GGGTCGTA---CTTTGTGTTCAAA--TTCGAC 276 *********** * * * *** ******* ** ********* * **** consensus_5241#0 ACACCAACGGTACGCATACGCACGATCTTGGCACGAGGAGTACGGGCGCGAATGTGGACA 348 consensus_5241#1 ACACCACCG-TCCGC-CATCGACGATCTGG--ACGAGGAGTACGGGCGCGA-TGTGGACA 331 ****** ** * *** * ******* * ******************* ******** consensus_5241#0 TCTTACGCCNAGGGCGAATCTATCGGGCAGGACCGTTATCCCCGAAGCCCGGTCAAGAGG 408 consensus_5241#1 TCGTACGC---AAGCGAATCTATCGGGCGGA--CGTT----TCGCAAC------AGGAAG 376 ** ***** *************** * **** ** * * * ** * consensus_5241#0 ATACACCTTGNACANTGCTTGGAGCAACCGAAGGGTCAGCNTTGCTTTGGCCGACACCGG 468 consensus_5241#1 AGATCACCTGCACGCTGCACGAGG-------------AGCT--------GCTGCCGCCCG 415 * * * ** ** *** * * *** ** * * ** * consensus_5241#0 CGTTACCCGGCAANGGGCACG-GTTGCACGCAAAAGCAGTGAATNCGCCGACAGTGGACG 527 consensus_5241#1 CGTACCGCAAGGACGTGCAGAAGATGATCGCGACGGC--CGAGCGCAACAAGACTAAGAA 473 *** * * * * *** * ** *** * ** ** * * * * * consensus_5241#0 ACAGCGGCAAGNAAGGACCTACACNGACAAACGGTTGGTTNCCCAAGGTANCGAAATAAC 587 consensus_5241#1 AGTGTTCCAGTACAATACC-GGGCTGGATTACTATCCTTTCCAGAAGTGAGCGGGGCAAA 532 * * ** * *** * * ** * ** * *** * ** ** consensus_5241#0 CCGGGACCATGGGNATNTANCGTAATTCCCCGTATGTCCCNCACAGAACGTTGNCAGCCA 647 consensus_5241#1 TCGAAGC---GGAGGATAATAGGAACGAATTGTAAACCCCAATCGTGTTGTGGTTTGATT 589 ** * ** * * ** *** *** * ** * * consensus_5241#0 GGGAAGAGNAAACTACGAACAACCCGGANGNG-AATTAACTAACNGCACACCCGCAANAC 706 consensus_5241#1 TTCTAAAGTAGAACTTTAGCAATATAATTTAACGGTTAAACATAGG-------------- 635 * ** * * * *** **** * * consensus_5241#0 GTTTNGTTANACAANCAGCCCGCCAAACAATCAGCGTCGNTTAGGTGGGGCTTCACTGNA 766 consensus_5241#1 ------------------------------------------------------------ consensus_5241#0 CAATTCNCACGTCCAAAACGTGTTNNGCAAAACCATTNAAGTCGACAAGTNATTNATAAC 826 consensus_5241#1 ------------------------------------------------------------ consensus_5241#0 TATATTAACACAGGGGTTGCTCAAACACCATTACTNGGAAACAANCGGACNNAANNNGCC 886 consensus_5241#1 ------------------------------------------------------------ consensus_5241#0 CTTGTGTATGAGCCCCCTNGCGAATGCAACTCTGCTAGCTGGCNATAGNGGACNAANGCC 946 consensus_5241#1 ------------------------------------------------------------ consensus_5241#0 AAAGAATGCCAAAGACCAAACGAAACAACGACGGTGGTAACAAAGAGTGGGATCGGNTTG 1006 consensus_5241#1 ------------------------------------------------------------ consensus_5241#0 TCAANNTCACGNGGGGAACTT 1027 consensus_5241#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||