cluster # 5242

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Anopheles gambiae
cluster # 5242 cluster # 5242 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5242#0 length = 618 sequences # 1

consensus_5242#1 length = 461 sequences # 1
consensus_5242#2 length = 458 sequences # 2

consensusID : consensus_5242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [GTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCCACAAACAGACTTGCTACCAATGGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGAATAGAAAGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAATTACATCTTATCAGTAACTCAAGGTTGCTTACAAGTCGGTAGCATGCAGACTATACGGAACGGCACTGCAATTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGCAGCGCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCCACCTTAAACGAACATGTGCAGTTGATTCGTTTACCAAAGCTGACAGACTCACGCAGCTATGAAGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGATGTCCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTGTACGGATCGCTACATAGG]

[+] EMBL BX622580             [GTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCCACAAACAGACTTGCTACCAATGGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGAATAGAAAGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAATTACATCTTATCAGTAACTCAAGGTTGCTTACAAGTCGGTAGCATGCAGACTATACGGAACGGCACTGCAATTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGCAGCGCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCCACCTTAAACGAACATGTGCAGTTGATTCGTTTACCAAAGCTGACAGACTCACGCAGCTATGAAGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGATGTCCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTGTACGGATCGCTACATAGG]




>consensus_5242#0
GTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTC
GTACCATTGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCCACAAACAGACTTGCT
ACCAATGGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGA
ATAGAAAGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAAT
TACATCTTATCAGTAACTCAAGGTTGCTTACAAGTCGGTAGCATGCAGACTATACGGAAC
GGCACTGCAATTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGC
AGCGCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCC
ACCTTAAACGAACATGTGCAGTTGATTCGTTTACCAAAGCTGACAGACTCACGCAGCTAT
GAAGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGAT
GTCCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTG
TACGGATCGCTACATAGG

consensusID : consensus_5242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [GATCGCCCGAGGAAGTTCTGTGGCAGTAGTCGTGTACAGTGCGACGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCGAAAATAGGCTGGAACTACGGATACGCACCATTTCCNGGACAGGTTTCCGTACTTAACATTTATAGAAAACTAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGGCACTGCGATATTGGATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGAGTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCACCTTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT]

[+] EMBL AL931075             [GATCGCCCGAGGAAGTTCTGTGGCAGTAGTCGTGTACAGTGCGACGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCGAAAATAGGCTGGAACTACGGATACGCACCATTTCCNGGACAGGTTTCCGTACTTAACATTTATAGAAAACTAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGGCACTGCGATATTGGATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGAGTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCACCTTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT]




>consensus_5242#1
GATCGCCCGAGGAAGTTCTGTGGCAGTAGTCGTGTACAGTGCGACGTTACGACGTTTGTT
GGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCG
ATGTCTACCGAAAATAGGCTGGAACTACGGATACGCACCATTTCCNGGACAGGTTTCCGT
ACTTAACATTTATAGAAAACTAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACT
ACATCGTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTAT
GGGCACTGCGATATTGGATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCG
AGTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCA
CCTTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT

consensusID : consensus_5242#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 458
fasta sequence

                              [GCAGATGCCGAGGNGA---TGTTGGAAGAACAGC-TCAC-AATGAAAG-TTCTGTGGCAGTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTA-CATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCAACCTACGGATACGCACCATTTCCAGGACAGTTTCCCGTACTTAACATTTATAGAAACATAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGCACTGCGAATATTGGNATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGANTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCANCTTAAA]

[+] EMBL AL696580             [GCAGATGCCGAGGNGA   TGTTGGAAGAACAGC TCAC AATGAAAG TTCTGTGGCAGTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTA CATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCA                                                                                                                                                                                                                                                                                             ]
[+] EMBL AL933435             [     gcCCGAGGNNAACCGGTTGGAAGAACAGCTTCACAAATGAAAGTTTCTGTGGCAGTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTA CCGAAAATAGGCTGGCAACCTACGGATACGCACCATTTCCAGGACAGTTTCCCGTACTTAACATTTATAGAAACATAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGCACTGCGAATATTGGNATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGANTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCANCTTAAA]




>consensus_5242#2
GCAGATGCCGAGGNGATGTTGGAAGAACAGCTCACAATGAAAGTTCTGTGGCAGTAGTCG
TGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACATT
GCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCAACCTACG
GATACGCACCATTTCCAGGACAGTTTCCCGTACTTAACATTTATAGAAACATAATGGTGT
ATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTGCTTA
AATAGAAGCACGATAAAAACTGGACAGTATGGCACTGCGAATATTGGNATTCAACAAAAA
TATGTGGGAGCAGCGCATTAACTTCTCGGCGANTGCAATCAACCTGCATCCGTACGAAGA
TATCGCATTGGCACGGTTGAATTATCCGGCANCTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5242#1      ---------------------------GATCGCCCGA-GGAAGTTCTGTGGCAGTAGTCG 32
consensus_5242#2      GCAGATGCCGAGGNGATGTTGGAAGAACAGCTCACAATGAAAGTTCTGTGGCAGTAGTCG 60
consensus_5242#0      -----------------------------------------------------GTAGTCG 7
                                                                           *******

consensus_5242#1      TGTACAGTGCGA-CGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCAT 91
consensus_5242#2      TGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTAC-AT 119
consensus_5242#0      TGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCAT 67
                      ************ ******************************************** **

consensus_5242#1      TGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACC-GAAAATAGGCTGG--AACTAC 148
consensus_5242#2      TGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCAACCTAC 179
consensus_5242#0      TGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCC-ACAAACAGACTTGCTACCAAT 126
                      ** ******  ****  ** *** ****  ***** **   *** ** ** *  * * * 

consensus_5242#1      GGATACGCACCATTTCCNGGACAGGTTTC----CGTACTTA---ACATTTA----TAGAA 197
consensus_5242#2      GGATACGCACCATTTCCAGGACAGTTTCC----CGTACTTA---ACATTTA----TAGAA 228
consensus_5242#0      GGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGAATAGAA 186
                      ******  * * ** ** ****** **      * * ****    *** **    *****

consensus_5242#1      AACTAATGGTGTA------------TGTGTAATGGTGCGCTGATAACACCAAACTACATC 245
consensus_5242#2      ACATAATGGTGTA------------TGTGTAATGGTGCGCTGATAACACCAAACTACATC 276
consensus_5242#0      AGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAATTACATC 246
                      *   ***   ***            * *** * ****** **** *** **** ******

consensus_5242#1      GTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGGCA 305
consensus_5242#2      GTGTCAGTAGCTCGCGGTT-GCTTAAATAGAAGCACGATAAAAACTGGACAGTATGG-CA 334
consensus_5242#0      TTATCAGTAACTCAAGGTT-GCTTACAAGTCGGTAGCATGCAGACTATACGGAACGG-CA 304
                       * ****** ***  **** ***** *     * *  **  * ***  ** * * ** **

consensus_5242#1      CTGCGA-TATTGGA-TTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGAGT 363
consensus_5242#2      CTGCGAATATTGGNATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGANT 394
consensus_5242#0      CTGCAA-TTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGCAGC 363
                      **** * * ****  *************  *********** ** *  ** ****  *  

consensus_5242#1      GCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGC-ACC 422
consensus_5242#2      GCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGC-ANC 453
consensus_5242#0      GCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCCACC 423
                      ******** ** ********* **  *** * *****  ****** **** ** ** * *

consensus_5242#1      TTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT--------------------- 461
consensus_5242#2      TTAAA------------------------------------------------------- 458
consensus_5242#0      TTAAACGAACATGTGCAGTT-GATTCGTTTACCAAAGCTGACAGACTCACGCAGCTATGA 482
                      *****                                                       

consensus_5242#1      ------------------------------------------------------------
consensus_5242#2      ------------------------------------------------------------
consensus_5242#0      AGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGATGT 542
                                                                                  

consensus_5242#1      ------------------------------------------------------------
consensus_5242#2      ------------------------------------------------------------
consensus_5242#0      CCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTGTA 602
                                                                                  

consensus_5242#1      ----------------
consensus_5242#2      ----------------
consensus_5242#0      CGGATCGCTACATAGG 618