These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [GTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCCACAAACAGACTTGCTACCAATGGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGAATAGAAAGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAATTACATCTTATCAGTAACTCAAGGTTGCTTACAAGTCGGTAGCATGCAGACTATACGGAACGGCACTGCAATTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGCAGCGCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCCACCTTAAACGAACATGTGCAGTTGATTCGTTTACCAAAGCTGACAGACTCACGCAGCTATGAAGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGATGTCCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTGTACGGATCGCTACATAGG] [+] EMBL BX622580 [GTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCCACAAACAGACTTGCTACCAATGGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGAATAGAAAGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAATTACATCTTATCAGTAACTCAAGGTTGCTTACAAGTCGGTAGCATGCAGACTATACGGAACGGCACTGCAATTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGCAGCGCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCCACCTTAAACGAACATGTGCAGTTGATTCGTTTACCAAAGCTGACAGACTCACGCAGCTATGAAGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGATGTCCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTGTACGGATCGCTACATAGG] consensusID : consensus_5242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GATCGCCCGAGGAAGTTCTGTGGCAGTAGTCGTGTACAGTGCGACGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCGAAAATAGGCTGGAACTACGGATACGCACCATTTCCNGGACAGGTTTCCGTACTTAACATTTATAGAAAACTAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGGCACTGCGATATTGGATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGAGTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCACCTTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT] [+] EMBL AL931075 [GATCGCCCGAGGAAGTTCTGTGGCAGTAGTCGTGTACAGTGCGACGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCGAAAATAGGCTGGAACTACGGATACGCACCATTTCCNGGACAGGTTTCCGTACTTAACATTTATAGAAAACTAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGGCACTGCGATATTGGATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGAGTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCACCTTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT] consensusID : consensus_5242#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence [GCAGATGCCGAGGNGA---TGTTGGAAGAACAGC-TCAC-AATGAAAG-TTCTGTGGCAGTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTA-CATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCAACCTACGGATACGCACCATTTCCAGGACAGTTTCCCGTACTTAACATTTATAGAAACATAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGCACTGCGAATATTGGNATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGANTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCANCTTAAA] [+] EMBL AL696580 [GCAGATGCCGAGGNGA TGTTGGAAGAACAGC TCAC AATGAAAG TTCTGTGGCAGTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTA CATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCA ] [+] EMBL AL933435 [ gcCCGAGGNNAACCGGTTGGAAGAACAGCTTCACAAATGAAAGTTTCTGTGGCAGTAGTCGTGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCATTGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTA CCGAAAATAGGCTGGCAACCTACGGATACGCACCATTTCCAGGACAGTTTCCCGTACTTAACATTTATAGAAACATAATGGTGTATGTGTAATGGTGCGCTGATAACACCAAACTACATCGTGTCAGTAGCTCGCGGTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGCACTGCGAATATTGGNATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGANTGCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGCANCTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5242#1 ---------------------------GATCGCCCGA-GGAAGTTCTGTGGCAGTAGTCG 32 consensus_5242#2 GCAGATGCCGAGGNGATGTTGGAAGAACAGCTCACAATGAAAGTTCTGTGGCAGTAGTCG 60 consensus_5242#0 -----------------------------------------------------GTAGTCG 7 ******* consensus_5242#1 TGTACAGTGCGA-CGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCAT 91 consensus_5242#2 TGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTAC-AT 119 consensus_5242#0 TGTACAGTGCGATCGTTACGACGTTTGTTGGAAGAGTGGTTGCTAGTGATGTCGTACCAT 67 ************ ******************************************** ** consensus_5242#1 TGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACC-GAAAATAGGCTGG--AACTAC 148 consensus_5242#2 TGCAAGAGAGCACTTTTGTTATTGAAGCGATGTCTACCCGAAAATAGGCTGGCAACCTAC 179 consensus_5242#0 TGAAAGAGAATACTTCAGTCATTCAAGCATTGTCTTCC-ACAAACAGACTTGCTACCAAT 126 ** ****** **** ** *** **** ***** ** *** ** ** * * * * consensus_5242#1 GGATACGCACCATTTCCNGGACAGGTTTC----CGTACTTA---ACATTTA----TAGAA 197 consensus_5242#2 GGATACGCACCATTTCCAGGACAGTTTCC----CGTACTTA---ACATTTA----TAGAA 228 consensus_5242#0 GGATACAAATCGTTGCCAGGACAGTTTCTGTATCATGCTTATATGCATATAAGAATAGAA 186 ****** * * ** ** ****** ** * * **** *** ** ***** consensus_5242#1 AACTAATGGTGTA------------TGTGTAATGGTGCGCTGATAACACCAAACTACATC 245 consensus_5242#2 ACATAATGGTGTA------------TGTGTAATGGTGCGCTGATAACACCAAACTACATC 276 consensus_5242#0 AGCGAATTAAGTAACTACACAAGGTTATGTGACGGTGCGTTGATCACATCAAATTACATC 246 * *** *** * *** * ****** **** *** **** ****** consensus_5242#1 GTGTCAGTAGCTCGCGGTTTGCTTAAATAGAAGCACGATAAAAACTGGACAGTATGGGCA 305 consensus_5242#2 GTGTCAGTAGCTCGCGGTT-GCTTAAATAGAAGCACGATAAAAACTGGACAGTATGG-CA 334 consensus_5242#0 TTATCAGTAACTCAAGGTT-GCTTACAAGTCGGTAGCATGCAGACTATACGGAACGG-CA 304 * ****** *** **** ***** * * * ** * *** ** * * ** ** consensus_5242#1 CTGCGA-TATTGGA-TTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGAGT 363 consensus_5242#2 CTGCGAATATTGGNATTCAACAAAAATATGTGGGAGCAGCGCATTAACTTCTCGGCGANT 394 consensus_5242#0 CTGCAA-TTTTGGCATTCAACAAAAATAATTGGGAGCAGCGGATAACTTTTTCGGGCAGC 363 **** * * **** ************* *********** ** * ** **** * consensus_5242#1 GCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGC-ACC 422 consensus_5242#2 GCAATCAACCTGCATCCGTACGAAGATATCGCATTGGCACGGTTGAATTATCCGGC-ANC 453 consensus_5242#0 GCAATCAATCTTCATCCGTACAAATCTATTGGATTGGTTCGGTTGGATTACCCAGCCACC 423 ******** ** ********* ** *** * ***** ****** **** ** ** * * consensus_5242#1 TTAAACAAACATGTGCAGCCCGATTAGATTACCAAAGTT--------------------- 461 consensus_5242#2 TTAAA------------------------------------------------------- 458 consensus_5242#0 TTAAACGAACATGTGCAGTT-GATTCGTTTACCAAAGCTGACAGACTCACGCAGCTATGA 482 ***** consensus_5242#1 ------------------------------------------------------------ consensus_5242#2 ------------------------------------------------------------ consensus_5242#0 AGGTATGGAGGGAACTACCTCCAATCAGTACCGCTCATACGTGCGCAACCGGGGTGATGT 542 consensus_5242#1 ------------------------------------------------------------ consensus_5242#2 ------------------------------------------------------------ consensus_5242#0 CCAATGCACATTGCAGCCAGGAACGTCCGGATTTCAACGCCACTGATATGGATATTTGTA 602 consensus_5242#1 ---------------- consensus_5242#2 ---------------- consensus_5242#0 CGGATCGCTACATAGG 618 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||