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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1273 fasta sequence
[AGAATCCCCGAGGTTTCTGGGAGGGCTACTGTGTTGCATAGCTGCTCGGGGCAGCTGAATCGTAGCATCTTTATGCCAGCGAGCGATGAGAATTAGGAAAGGCGTGTTCTGTTTTCCCACAGCGAGTGGAAGAGTGTTTCCTTTCGAATTTTTGCTAGCGAGTTAAAGACGATCCCTGTCAGTGAAATATAATATCAAGCACTGTTTGTTCCATGGATCGATTATGCATTCACTCTAGAACACCGACGACTCAGTAATTAACAATGGTTTGGTGTATTCTTCTACCAAAGAAAACAATAAAACTGCAGTGCGAATTTTTGTCTTTCATACTACTAGAATCAAATAATCGGGTCTCTATCGTACACAAGTAAGGTAGAACGTAACAAACATAAACTCACACAACGAGAAACGAAAATAGGAAACACTCATCCTTTAGGTGGAAAACAATGGCATACGAAATGATCGTTAGTTAAGTGGGGCCTATCCATGGTCTGTCGCTAGGTGCAATGTGTAACTAATTAATATGA-GCCCAGGCAAAGTTAGATAAG-ATTACTACAGTAGGCAAGAACGGTACGAAACACACAGTGCGGCGCGACTCAATGTTGTTAATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAGCTTGTTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGGAGGAGTAGGTTGAAGAAGCAAACGAACAACATATAAAAGACAGCGCTATTTTCAGATCTCTTCCCACTGTCCGAGGAGATGATAACCGTTTTACGAACAAGAAATCTTCCAAATAGCCCCTCTAAAAGTGTGAAAACGTTACAAAGAATTGTGTTGTATGTTATTGTTGCGCACTAAACTCTCTCAATACGCGCCATCGCGCGCACACCCTGTATGTTCTGCGAAATTCCACTACGCCGAGTGCAACTAGGCAGCTATTCCTATTGACACACACACAAACACACGTGGCGCAGCTTAACGATATTGATTTCACTGGCAATTGATTTCATTGCATGTTGCTATCCCTACTGATAAGGGTAAGATTTCATCCCATCTTCTCCCAGGAGGGGAGAGCAGAACAAAGGCGTATGGATAGCGTACACGTTAGCGGTTACATTATTTAAAATGTTAACGATAGCAATATCAGTATTTAAAGACAAAACATACAAAATGTTAATGTTATACAAACGCGTTTCCGGCAGAAACCAACACATCTGGATGTGGTGGTGAATGCTAACG]
[+] EMBL AL930477 [AGAATCCCCGAGGTTTCTGGGAGGGCTACTGTGTTGCATAGCTGCTCGGGGCAGCTGAATCGTAGCATCTTTATGCCAGCGAGCGATGAGAATTAGGAAAGGCGTGTTCTGTTTTCCCACAGCGAGTGGAAGAGTGTTTCCTTTCGAATTTTTGCTAGCGAGTTAAAGACGATCCCTGTCAGTGAAATATAATATCAAGCACTGTTTGTTCCATGGATCGATTATGCATTCACTCTAGAACACCGACGACTCAGTAATTAACAATGGTTTGGTGTATTCTTCTACCAAAGAAAACAATAAAACTGCAGTGCGAATTTTTGTCTTTCATACTACTAGAATCAAATAATCGGGTCTCTATCGTACACAAGTAAGGTAGAACGTAACAAACATAAACTCACACAACGAGAAACGAAAATAGGAAACACTCATCCTTTAGGTGGAAAACAATGGCATACGAAATGATCGTTAGTTAAGTGGGGCCTATCCATGGTCTGTCGCTAGGTGCAATGTGTAACTAATTAATATGACGCCCAGGCAAAGTTAGATAAGCATT ]
[+] EMBL BX603692 [ AGGTAGAACGTAACAAACATAAACTCACACAACGAGAAACGAAAATAGGAAACACTCATCCTTTAGGTGGAAAACAATGGCATACGAAATGATCGTTAGTTAAGTGGGGCCTATCCATGGTCTGTCGCTAGGTGCAATGTGTAACTAATTAATATGA GCCCAGGCAAAGTTAGATAAG ATTACTACAGTAGGCAAGAACGGTACGAAACACACAGTGCGGCGCGACTCAATGTTGTTAATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAGCTTGTTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGGAGGAGT ]
[+] EMBL BX616870 [ GTTAAGTGGGGCCTATCCATGGTCTGTCGTTAGGTGCAATGTGTAACTAATTAATATGA GCCCAGGCAAAGTTAGATAAG ATTACTACAGTAGGCAAGAACGGTACGAAACACACAGTGCGGCGCGACTCAATGTTGTTAATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAGCTTGTTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGGAGGAGTAGGTTGAAGAAGCAAACGAACAACATATAAAAGACAGCGCTATTTTCAGATCTCTTCCCACTGTCCGAGGAGATGATAACCGTTTTACGAACAAGAAATCTTCCAAATAGCCCCTCTAAAAGTGTGAAAACGTTACAAAGAATTGTGTTGTATGTTATTGTTGCGCACTAAACTCTCTCAATACGCGCCATCGCGCGCACACCCTGTATGTTCTGCGAAATTCCACTACGCCGAGTGCAACTAGGCAGCTATTCCTATTGACACACACACAAACACACGTGGCGCAGCTTAACGATATTGATTTCACTGGCAATTGATTTCATTGCATGTTGCTATCCCTACTGATAAGGGTAAGATTTCATCCCATCTTCTCCCAGGAGGGGAGAGCAGAACAAAGGCGTATGGATAGCGTACACGTTAGCGGTTACATTATTTAAAATGTTAACGATAGCAATATCAGTATTTAAAGACAAAACATACAAAATGTTAATGTTATACAAACGCGTTTCCGGCAGAAACCAACACATCTGGATGTGGTGGTGAATGCTAACG]
consensusID : consensus_5249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[GCTCGAGGCAGAATCGCCACGAGGTGTTACGGCGCGACTCAATGTTGTNCCAATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAGCTTGGTTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGGCAGGAGTAGGTTGAAGAAGCAAACGAACAACCATATAACAAGACAGCGCTATTTTCAGATCTCTTCCCACTGTCCGAGGAGATGATAACCGTTTTACGAACAAGAAATCTTCCAAATAGCCCTCTAAAAGTGTGAAACACGTTACAACCAGAATCTGTGTTGTATGTCATTCGTTCGCGCACTAAACTCTCTCAATACTGCGCCATCGCGCGCACACCCTGGTATGTTCTGCGAAATTCCACTACGCCGAGTGCAACTAGGCAGCTATTCCTCATTGACACACACACAAACACCACGTGACGCAGCTTTAACGATACTTGATTTACACTGGCAATTGATTTCATTGCATGTTGCTATCCCTACTGATACGAGGGTAAGCATTTCATCCCATCTTACTCCACAGGAAGGGGACGAGCAGACACAAAGGCGTACATGGATATGCGTACACAGGTTAAGCAGGGTTACACTTAATTTCACAACATGTTAACGGACTAGGCNACATAATCAGGCATTTTCAAAAGGAACCAAAC]
[+] EMBL AL696634 [GCTCGAGGCAGAATCGCCACGAGGTGTTACGGCGCGACTCAATGTTGTNCCAATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAGCTTGGTTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGGCAGGAGTAGGTTGAAGAAGCAAACGAACAACCATATAACAAGACAGCGCTATTTTCAGATCTCTTCCCACTGTCCGAGGAGATGATAACCGTTTTACGAACAAGAAATCTTCCAAATAGCCCTCTAAAAGTGTGAAACACGTTACAACCAGAATCTGTGTTGTATGTCATTCGTTCGCGCACTAAACTCTCTCAATACTGCGCCATCGCGCGCACACCCTGGTATGTTCTGCGAAATTCCACTACGCCGAGTGCAACTAGGCAGCTATTCCTCATTGACACACACACAAACACCACGTGACGCAGCTTTAACGATACTTGATTTACACTGGCAATTGATTTCATTGCATGTTGCTATCCCTACTGATACGAGGGTAAGCATTTCATCCCATCTTACTCCACAGGAAGGGGACGAGCAGACACAAAGGCGTACATGGATATGCGTACACAGGTTAAGCAGGGTTACACTTAATTTCACAACATGTTAACGGACTAGGCNACATAATCAGGCATTTTCAAAAGGAACCAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5249#0 AGAATCCCCGAGGTTTCTGGGAGGGCTACTGTGTTGCATAGCTGCTCGGGGCAGCTGAAT 60
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CGTAGCATCTTTATGCCAGCGAGCGATGAGAATTAGGAAAGGCGTGTTCTGTTTTCCCAC 120
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AGCGAGTGGAAGAGTGTTTCCTTTCGAATTTTTGCTAGCGAGTTAAAGACGATCCCTGTC 180
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AGTGAAATATAATATCAAGCACTGTTTGTTCCATGGATCGATTATGCATTCACTCTAGAA 240
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CACCGACGACTCAGTAATTAACAATGGTTTGGTGTATTCTTCTACCAAAGAAAACAATAA 300
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AACTGCAGTGCGAATTTTTGTCTTTCATACTACTAGAATCAAATAATCGGGTCTCTATCG 360
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TACACAAGTAAGGTAGAACGTAACAAACATAAACTCACACAACGAGAAACGAAAATAGGA 420
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AACACTCATCCTTTAGGTGGAAAACAATGGCATACGAAATGATCGTTAGTTAAGTGGGGC 480
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CTATCCATGGTCTGTCGCTAGGTGCAATGTGTAACTAATTAATATGAGCCCAGGCAAAGT 540
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TAGATAAGATTACTACAGTAGGCAAGAACGGTACGAAACACACAGTGCGGCGCGACTCAA 600
consensus_5249#1 --------------GCTCGAGGCAGAATCGCCACGAGGTGT----TACGGCGCGACTCAA 42
* ***** * ** **** * *************
consensus_5249#0 TGTTGTT--AATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAG 658
consensus_5249#1 TGTTGTNCCAATTTGTCGTTATTTATTCAGTTAGTTTATGGACTGTAGCTCGTAACGCAG 102
****** ***************************************************
consensus_5249#0 CTTG-TTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGG-A 716
consensus_5249#1 CTTGGTTGCATTAGTCAAACGTACAGCTTTTGTAACTTGGTTTAATAGCACGAGCAGGCA 162
**** ***************************************************** *
consensus_5249#0 GGAGTAGGTTGAAGAAGCAAACGAACAAC-ATATAA-AAGACAGCGCTATTTTCAGATCT 774
consensus_5249#1 GGAGTAGGTTGAAGAAGCAAACGAACAACCATATAACAAGACAGCGCTATTTTCAGATCT 222
***************************** ****** ***********************
consensus_5249#0 CTTCCCACTGTCCGAGGAGATGATAACCGTTTTACGAACAAGAAATCTTCCAAATAGCCC 834
consensus_5249#1 CTTCCCACTGTCCGAGGAGATGATAACCGTTTTACGAACAAGAAATCTTCCAAATAGCCC 282
************************************************************
consensus_5249#0 CTCTAAAAGTGTGAAA-ACGTTACAA--AGAAT-TGTGTTGTATGTTATTG--TTGCGCA 888
consensus_5249#1 -TCTAAAAGTGTGAAACACGTTACAACCAGAATCTGTGTTGTATGTCATTCGTTCGCGCA 341
*************** ********* ***** ************ *** * *****
consensus_5249#0 CTAAACTCTCTCAATAC-GCGCCATCGCGCGCACACCCTG-TATGTTCTGCGAAATTCCA 946
consensus_5249#1 CTAAACTCTCTCAATACTGCGCCATCGCGCGCACACCCTGGTATGTTCTGCGAAATTCCA 401
***************** ********************** *******************
consensus_5249#0 CTACGCCGAGTGCAACTAGGCAGCTATTCCT-ATTGACACACACACAAACAC-ACGTGGC 1004
consensus_5249#1 CTACGCCGAGTGCAACTAGGCAGCTATTCCTCATTGACACACACACAAACACCACGTGAC 461
******************************* ******************** ***** *
consensus_5249#0 GCAGCTT-AACGATA-TTGATTT-CACTGGCAATTGATTTCATTGCATGTTGCTATCCCT 1061
consensus_5249#1 GCAGCTTTAACGATACTTGATTTACACTGGCAATTGATTTCATTGCATGTTGCTATCCCT 521
******* ******* ******* ************************************
consensus_5249#0 ACTGATA--AGGGTAAG-ATTTCATCCCATCTTCTCCCAGGAGGGGAGAGCAGAACAAAG 1118
consensus_5249#1 ACTGATACGAGGGTAAGCATTTCATCCCATCTTACTCCACAGGAAGGGGAC-GAGCAGAC 580
******* ******** *************** *** * * * * ** ** *
consensus_5249#0 GCGTATGGATAGCGTACACGTTAGCGGTTACATTATTTAAAATGTTAACGATAGCAATAT 1178
consensus_5249#1 ACAAA-----GGCGTACATGGATATGCGTACACAGGTTAA-------------GCAGGGT 622
* * ******* * * **** **** *** *
consensus_5249#0 CAGTATTTAAAGACAAAACATACAAAATGTTAATGTTATACAAAC--GCGTTTCCGGCAG 1236
consensus_5249#1 TA-CACTTAATTTCACAACATGTTAACGGACTAGGCNACATAATCAGGCATTTTCAAAAG 681
* * **** ** ***** ** * * * * * ** * ** *** * **
consensus_5249#0 AAACCAACACATCTGGATGTGGTGGTGAATGCTAACG 1273
consensus_5249#1 GAACCAA-AC--------------------------- 690
****** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||