These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence [GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGTGGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAATTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGAGCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGCCGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCTATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATACATATATCATTATATTTCTGCTTACACTTGATGCCGCAAATTCCAGCAGTACAGAGACGAGGGGTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCTGTTCGGAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGGCCTTTTGAAGTCCGTNGTTGAGCA] [+] EMBL BX467748 [GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGTGGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAATTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGAGCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGCCGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCTATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATACATATATCATTATATTTCTGCTTACACTTGATGCCGCAAATTCCAGCAGTACAGAGACGAGGGGTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCTGTTCGGAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGGCCTTTTGAAGTCCGTNGTTGAGCA] [+] EMBL BX613846 [ CATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGAGCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATGACCAAGGGGGAT ] consensusID : consensus_5253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTTGCGTGAATTATACATATATCATTATATTTCTGCTTACTCTTGATGCCGCAATTCCACACAGCCACGAGGGGTATAGGAAGAAAATGAAAAAATAATAATATAAATAGGGAAGCTGTTCGGAGAAGCTGTGTAAGTGCGCGCGCTCTCGTTCAAATAGCGAATTTTGCCTTTGAGTCGTTGTGAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGCGTTCAAGATCAACACTTTCCTGTATGCCTGTTGCGTTTG] [+] EMBL BX617260 [GCGAGGTGAAATTCTCGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGTGTAAGCTGTGTCGCGGGATGGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTTGCGTGAATTATACATATATCATTATATTTCTGCTTACTCTTGATGCCGCAATTCCACACAGCCACGAGGGGTATAGGAAGAAAATGAAAAAATAATAATATAAATAGGGAAGCTGTTCGGAGAAGCTGTGTAAGTGCGCGCGCTCTCGTTCAAATAGCGAATTTTGCCTTTGAGTCGTTGTGAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGCGTTCAAGATCAACACTTTCCTGTATGCCTGTTGCGTTTG] consensusID : consensus_5253#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [CTCGAGGCAGATCGCCAGAGGTNNTAGCAGGACGTTTGCATCACGACTTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCACGTGTGCCGAAGCTCCATTCACTGGCGTGAACTTTATTTCACCCGGCTTGATAGGTTTACATTTCTCGGTCAACAAAGAAAATTTTCACCCGTAAATGGCGCGCTTGANAGACCCTTAAANACAAAGGACACTCGCGGGGCAAAAA] [+] EMBL AL696759 [CTCGAGGCAGATCGCCAGAGGTNNTAGCAGGACGTTTGCATCACGACTTCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCACGTGTGCCGAAGCTCCATTCACTGGCGTGAACTTTATTTCACCCGGCTTGATAGGTTTACATTTCTCGGTCAACAAAGAAAATTTTCACCCGTAAATGGCGCGCTTGANAGACCCTTAAANACAAAGGACACTCGCGGGGCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5253#0 GGCCAGAATCGGCACGAGGTTGAAAAATCCGGCCAAACCATTCCCGCTCAACACGGACGT 60 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 GGGTGTGCTGAAGTGGCGCTACCAGACACAGGATGAATCTGCCATTCCGTTGACGATCAA 120 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 TTGTTGGCCATCGGAAAATGCCGAGGGCGGTTGTGATGTGAATATTGAGTACGAGCTCGA 180 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 GCACACACGGCTGGAGCTGCAGGACGTTTGCATCACGATTCCATTACCAATGGGTATTAC 240 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 GCCATCGATTGCCGAATGCGACGGTGACTACAATCACGATTCGCGAAAGAACCAGCTGCT 300 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 GTGGAACCTTCCGGTGATCGATGCTTCCAGCAAACAGGGGCTCGATGGAATTCAGTGTGC 360 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 CGAGCTCCATTCCGGGTGACTTTTTCCCGCTTGATGTTACATTCTCGTCAAAGATTCCCT 420 consensus_5253#1 ------------------------------------------------------------ consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 ATGCTGAGCTAGCGCCCGCAAAGGTACTGCTGGTCGACGACGGTAGCGAGGTGAAATTCT 480 consensus_5253#1 ---------------------------------------------GCGAGGTGAAATTCT 15 consensus_5253#2 ------------------------------------------------------------ consensus_5253#0 CGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGT-GTAAGCTGTGTCGCGGGAT 539 consensus_5253#1 CGGCCGAAACAGTTTTCTACACGGATAAGTTTGAAATAGT-GTAAGCTGTGTCGCGGGAT 74 consensus_5253#2 --------------CTCGAGGCAGATC-GCCAGAGGTNNTAGCAGGACGT-TTGCATCAC 44 ** * * *** * ** * * * * * ** * ** * consensus_5253#0 GGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCATTGCGTGAATTATA-- 597 consensus_5253#1 GGCTGTCCTGCAATGTTTCTTCTCGCGATCGCGGTAACAGATCGTTGCGTGAATTATA-- 132 consensus_5253#2 GACT-TCCATTACCAATGGGTATTACGCCATCGATTGCCGAATGCGACGGTGACTACAAT 103 * ** *** * * * * ** ** * * ** ** * ** * consensus_5253#0 CATATATCATTATATTTCTGCTTACACTTGATGCCGCAAAT--TCCAGCAGTACAGAGAC 655 consensus_5253#1 CATATATCATTATATTTCTGCTTACTCTTGATGCCGCAA-T--TCCA----CACAGCCAC 185 consensus_5253#2 CACGATTCGCGAAAGAACCAGCTGCTGTGGAACCTTCCGGTGATCGATGCTTCCAGCAAA 163 ** ** * * * * * * ** * * * ** * *** * consensus_5253#0 GAGGGGTATACGGAAGGAAANATTGACTTACAGTACATAATTATTACACTAGGGAAAGCT 715 consensus_5253#1 GAGGGGTATA-GGAAGAAAATG---------AAAAAATAATAATATAAATAGGGAA-GCT 234 consensus_5253#2 CAGGGGCTCGATGGAATTCACG-----TGTGCCGAAGCTCCATTCACTGGCGTGAACTTT 218 ***** * * * * * * *** * consensus_5253#0 GTTCGGAGAAAGCTGTGTAAAGTGCGCGCCGGCTCTCCGGTTCAAATAGCGGAATTTTGG 775 consensus_5253#1 GTTCGGAGAA-GCTGTGTAA-GTGCGCGC--GCTCTC--GTTCAAATAGCG-AATTTTG- 286 consensus_5253#2 ATTTCACCCG-GCTTGATAG-GTTTACAT---TTCTC--GGTCAACAAAGAAAATTTTCA 271 ** *** ** ** * **** * **** * ****** consensus_5253#0 CCTTTTGAAGTCCGTNGTTGAGCA------------------------------------ 799 consensus_5253#1 -CCTTTGAG--TCGTTGT-GAGCAACGGACTCTCATGGATAAGATGATGGTAGTAGTAGC 342 consensus_5253#2 -CCCGTAAA---TGGCGC-GCTTGANAGACCCTTAAANACAA----AGGACACTCGCGGG 322 * * * * * * consensus_5253#0 --------------------------------------- consensus_5253#1 GTTCAAGATCAACACTTTCCTGTATGCCTGTTGCGTTTG 381 consensus_5253#2 GCAAAAA-------------------------------- 329 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||