These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 912 fasta sequence [CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGTTATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGGGCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTCCGTTGCAAAGCGCAAG-AGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTCTGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCTGTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGACGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTCCTAATCAATCTGCGCGC--GCGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAGACACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTG-CCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAATAGCTTCTTTTTTTCTTTTCAATCCTTATCATACCTTCCCTTCTA] [+] EMBL BX620133 [CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGTTATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGGGCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTCCGTTGCAAAGCGCAAG AGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTCTGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCTGTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGACGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCGGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGCTCCTGCTCCTAATCAATCTGCGCGC GCGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAGACACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTG CCATGGCTACAC ] [-] EMBL BX605508 [ ATTGGAGAACATAATTGGCTGGCAAACGGGCAGGCAAGCGTCAGACAGTCGTCTAAGGATGTGTTTTTCTTTGCA GTTTTCTGTTTTCCGTTGCAAAGCGCAAGCGGTGAAA CGGGTTTAAAAGGCCGGGCTGTGTAGTGAAGC TT T CTGCTGCTGCTGCTTTACTACTAACATTCACCACTGCCCGAGTTATTGTTCTGTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTGCGTTTAGTTTAGACGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTC ] [-] EMBL BX622665 [ CGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGAAAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCTTCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAGCTACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTGCCCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAATAGCTTCTTTTTTTCTTTTCAATCCTTATCATACCTTCCCTTCTA] consensusID : consensus_5257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAGTACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTTGGCCCATGGCTACACTACACACACACACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTTATTCAACCTCGGCGCGATC] [-] EMBL AL696934 [TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCAATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAGACACTAGACCTCAGTACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTTGGCTTTGGCCCATGGCTACACTACACACACACACACACAACACGTCTAGCACACGCTATGAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTTTTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTATTGTCAATAATGAAAGTGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTTATTCAACCTCGGCGCGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5257#0 CGAACCNCACCATGCGCAAGCCGACACGCAAACGAGCAAGTGGACGCGCAGCGGTGCGGT 60 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TATGTGCGGTACTATTGTTTTTTTAATGTGTATTGGAGAACATAATTGGCTGGCAAACGG 120 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 GCAGGCAAGCGTCAGGCAGTCGTCTAAGGATGTGTTTTTCTTTGCAGGGTTCCATTTTTC 180 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CGTTGCAAAGCGCAAGAGTGAAATTGGGTTTAAAAGGCCGGGCTGTATAGTGAAGCGTTC 240 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TGGTGCTGCTGCTGCTGCTGCTCTACTACTAACATTCACCACTGCCCGAGTTATTGTTCT 300 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 GTACTGCGTTACTAATTATTATCATACTTGTTTGTTTGTGTGTATTACGTTTAGTTTAGA 360 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CGTTTTCGCTTGAAAAGTGGCTAGCATGCGGCGGCTGCTGCTGCTGCTGCTGCTTATTGA 420 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 AAGGCTCGTGGAAAGGACCAAGAAAAGGCACAATTTTGTTTGTTTGTTTTCATGAACTCT 480 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TCCTTATCATTTCTTGCGCTGCGGTTTTTGTTTGCTTTCGTTCGTTCCTGCTCCTAATCA 540 consensus_5257#1 --------------TGCGCTGCGGTTTTTGTTTGCTTTCGTTCTTTCCTGCTCCTAATCA 46 ***************************** **************** consensus_5257#0 ATCTGCGCGCG--CGCGTGCGCTTCAGCAAACCTACTGCTACCGGCTCGACTAACACTAG 598 consensus_5257#1 ATCTGCGCGCGTGCGCGCGCGCTTCAGCAAACCTACTGCTACCTGCTCGACTAACACTAG 106 *********** **** ************************* **************** consensus_5257#0 ACACTAGACCTCAGCTACTACAAACTACTGCTACTACCACCACACTACTAATACCCTCTT 658 consensus_5257#1 ACACTAGACCTCAG-TACTACAAAGTACTGCTACTACCACCACACTACTAATACCCTCTT 165 ************** ********* *********************************** consensus_5257#0 GGCTTG---CCATGGCTACACTACACACACACAACACACAACACGTCTAGCACACGCTAT 715 consensus_5257#1 GGCTTTGGCCCATGGCTACACTACACACACACA-CACACAACACGTCTAGCACACGCTAT 224 ***** ************************ ************************** consensus_5257#0 GAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTT 775 consensus_5257#1 GAGACTGTTAGTAAACTGTATTACTGTATCTTTCTGTTAACCTCTATTTTCCTTTCCTTT 284 ************************************************************ consensus_5257#0 TTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTA 835 consensus_5257#1 TTTGTTTATGTCTTAAACCACACACATACACACACACACAGCGCTCTATCTAGCTTTCTA 344 ************************************************************ consensus_5257#0 TTGTCAATAATGAAAGTGGAGGATGAAGCAAA-TAGCTTCTTTTTTTCTTTTCAATCCTT 894 consensus_5257#1 TTGTCAATAATGAAAGTGGAGGATGAAGCAAAATAGCTTCTTTTTTTCTTTTCAATCCTT 404 ******************************** *************************** consensus_5257#0 ATCATACCTTCCCTTCTA- 912 consensus_5257#1 ATTCAACCTCGGCGCGATC 423 ** **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||