These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence [CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGACCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGTGTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAAGTGGTGTA------TCGGGTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGATCAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGCCGAGATAAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATCGATCACGCGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAACGTGGAGAAC] [+] EMBL BM643488 [CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGACCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGTGTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAAGTGGTGTA TCGGGTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGATCAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGCCGAGATAAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATCGATCACGCGTACTACCCGGTGGAC ] [+] EMBL CNS09AFY [ agAGCTGCTCAGTG TATTTTGTGTATTTTTAACCACCTGTGTGTATCTCTTCTCGTGTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAAGTGTTGTATCGGGTTCGGGTTCGGGGCGACCGGTTGCCTCACGACTCGGCATCAGTGAGCAAAGATCAGTTTAGGCAACGAGTTGCATGATCCTTAGTTTATCGTTCGGACTACGTACGGCACCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATATACCGGCCGAGATAAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATCGATCACGCGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAACGTGGAGAAC] consensusID : consensus_5259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [AAAGCAACAGAAATGTAACCGCCTTATGATGGGTGGCACATTTTAAACGCCAGACCGGTTTGTTTACCTCCACGCGGCAAAAAGGCACGCATGGTGTGTGGGTGAATGTGATAAATGAGTACCTCCACTGTTAAATTTGTTTAAGGGCAGCTCCCTCGTTTTACGTGTGTGCCTGAGCTTTTTCTTAAAACTTTTTCTATAAAAAGATATGTTAAAATGGAAATAATGGCATTAAAATCCTTTTTTATCCCAACAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCAACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATCGATCACGCTACT] [+] EMBL BX616595 [AAAGCAACAGAAATGTAACCGCCTTATGATGGGTGGCACATTTTAAACGCCAGACCGGTTTGTTTACCTCCACGCGGCAAAAAGGCACGCATGGTGTGTGGGTGAATGTGATAAATGAGTACCTCCACTGTTAAATTTGTTTAAGGGCAGCTCCCTCGTTTTACGTGTGTGCCTGAGCTTTTTCTTAAAACTTTTTCTATAAAAAGATATGTTAAAATGGAAATAATGGCATTAAAATCCTTTTTTATCCCAACAGATTATTCGCACACTATGCTACACCACAAAGCTAGCCTCGGGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACACGTGCAACGCTGCGCCTGTTCGACGATTTGCCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATCGATCACGCTACT] consensusID : consensus_5259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [GGCAGAATCGCCCGAGGTGAAGACGAATCCTTAGTTTATCGTTCCGACTACGTACGGTACCCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCGAGATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC] [+] EMBL AL697022 [GGCAGAATCGCCCGAGGTGAAGACGAATCCTTAGTTTATCGTTCCGACTACGTACGGTACCCCAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCGAGATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGCACAGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAACACGTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACGGCTGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5259#0 CCGCGGACGCGTGGGCTGCAGCGAGAAGCACACACACTCTCGCTCTCCCTCCGATCCCGA 60 consensus_5259#2 ------------------------------------------------------------ consensus_5259#1 ------------------------------------------------------------ consensus_5259#0 CCAGCAGCTGCTCAGTGTTATTTTGCGTAGTTTTAACCACCTGTGTGTATCTCTTCTCGT 120 consensus_5259#2 ------------------------------------------------------------ consensus_5259#1 --------------------------AAAGCAACAGAAATGTAACCGCCTTATGATGGGT 34 consensus_5259#0 GTCCATTTTTGCGGGATCAATTGATAAGATTAGAGCGGGAGCTGCTGCTGAAAGTGATAA 180 consensus_5259#2 ------------------------------------------------------------ consensus_5259#1 GGCACATTTTAAACGCCAGACCGGTTTGTTTACCTCCA----CGCGGCAAAAAGGCACGC 90 consensus_5259#0 GTGGTGTATCGG-GTTCGGGGCGACCGGTTGCTTCACGACTCGGCATCAGTGAGCAAAGA 239 consensus_5259#2 ----------------------------------------------------GGCAGA-A 7 consensus_5259#1 ATGGTGTGTGGGTGAATGTGATAAATGAGTACCTCCACTGTTAAATTTGTTTAAGGGCAG 150 consensus_5259#0 TCAGTTTAGGCAACGAGTTGCACGATCCTTAGTTTATCGTTCCGACTACGTACGGCACCC 299 consensus_5259#2 TCGCCCGAGGTGAAGACG-----AATCCTTAGTTTATCGTTCCGACTACGTACGGTACCC 62 consensus_5259#1 CTCCCTCGTTTTACGTGT-----GTGCCTGAGCTTTTTCTTAAAACTTTTTCTATAAA-- 203 * * *** ** ** * ** *** * * consensus_5259#0 -AAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGG-CCGAG 357 consensus_5259#2 CAAGATGAGCAAAATGTTGAACGAAATCTGTGATATGCTGGACGGATACACCGGGCCGAG 122 consensus_5259#1 -AAGATATGTTAAA------ATGGAAATAATGGCAT--TAAAATCCTTTTTTATCCCAAC 254 ***** * *** * * ** ** ** * * * ** * consensus_5259#0 ATAA-GATTATTCGCACACTATGCTACACCACAAAGCTA-GCCTCGG-GGCTGTATGCAC 414 consensus_5259#2 ATAACGATTATTCGNACACTATGCTACACCACAAAGCTAAGCCTCGGAGGCTGTATGCAC 182 consensus_5259#1 A----GATTATTCGCACACTATGCTACACCACAAAGCTA-GCCTCGG-GGCTGTATGCAC 308 * ********* ************************ ******* ************ consensus_5259#0 AGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACAC 474 consensus_5259#2 AGTCCGACCCGGGGCGTGCCAAAAAACTGGGCATATTTAGCTCGAAAATGTCCCAAACAC 242 consensus_5259#1 AGTCCGACCCGGGGCGTGCCAAAAAACTGGCCATATTTAGCTCGAAAATGTCCCAAACAC 368 ****************************** ***************************** consensus_5259#0 GTGCCACGCTGCGCCTGTTCGACGATTTGC-CCATGCTGGCGTACAGTCTGAGCTACGGC 533 consensus_5259#2 GTGCCACGCTGCGCCTGTTCGACGATTTGCGCCATGCTGGCGTACAGTCTGAGCTACGGC 302 consensus_5259#1 GTGCAACGCTGCGCCTGTTCGACGATTTGC-CCATGCTGGCGTACAGTCTGAGCTACGGC 427 **** ************************* ***************************** consensus_5259#0 TGTGGCAGCAAGGAGCCGGACCGCTGGATGGGCCTGATTGGGTTCGTCACGAATCTGATC 593 consensus_5259#2 TGTGGCAGCAAGGAGCCGGACCGCTGGATGGGC--------------------------- 335 consensus_5259#1 TGTGGCAGCAAGGAGCCGGACCGCTGGATGGGTCTGATCGGGTTCGTCACGAATCTGATC 487 ******************************** consensus_5259#0 GATCACGCGTACTACCCGGTGGACAAGATCTGTTGGCTGATCGAGCACAATCTGCTGAAC 653 consensus_5259#2 ------------------------------------------------------------ consensus_5259#1 GATCACGC-TACT----------------------------------------------- 499 consensus_5259#0 GTGGAGAAC 662 consensus_5259#2 --------- consensus_5259#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||