These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence [TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACAATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCTTTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTATTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCC] [+] EMBL BX616200 [TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACAATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCTTTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTATTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCC] [+] EMBL BX608777 [ CGGCTCCCGCCCCCGTTATGTAACAATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCCTTCTTTTCTACGAAACACTTACCAACACACTCTTCTTGTGGCAACGCAGGTTAACGCACAATGCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGGCAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAATAAGCTAAAAAAAACAGCATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGGTATTTAACAGGC ] consensusID : consensus_5264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence [TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAAAAATACGAACAAAAAAAAACGAGACAAACCAAGAGCAAAACAAAACGAATAACAAATGAAACGAAGACAAATTATTG] [+] EMBL BX608775 [TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAA ] [+] EMBL BX617949 [ ATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAACAAGGACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAACAAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGTTTAAGGAAAAGAGAGCGAAAAAATACGAACAAAAAAAAACGAGACAAACCAAGAGCAAAACAAAACGAATAACAAATGAAACGAAGACAAATTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5264#0 TATCGCACAAAAAAGAAACTTTTAACAATCTTCTACGGCTCCCGCCCCCGTTATGTAACA 60 consensus_5264#1 --------------------TTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTA-A 39 ******* * * * * * *** * * consensus_5264#0 ATCAGAACATGGAATCAGAACCCAGAGAGAACAACGTTAAGTGCAAACTTTTTGCTTTCT 120 consensus_5264#1 ATTAAAGC--TGAACCTCCCCCCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGT 97 ** * * * *** * **** * ** * * *** **** ** * * consensus_5264#0 TTTCTACGAAACACTTAC-CAACACACTCTTCTTGTGGCAACGCAGG-TTAACGCACAAT 178 consensus_5264#1 TAGTTAGAATTTTGTTAAATTATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAA 157 * ** * *** * * * * * ** * ** *** * ** consensus_5264#0 GCAAAACACACACAAAGTTCACCAATAACAACAACAACAACAACGGCAAAATACCACTGG 238 consensus_5264#1 ACAAGG-ACATTCCACATTGAAATGTGGTAGAAAAGAAGGTAAGAAAACAAAACAACAAC 216 *** *** * * ** * * * ** * ** * ** ** ** consensus_5264#0 CAAAAGCGTGTAAACAAACCACACGAGCAAACAAAACACAA-TAAGCTAAAAAAAACAGC 297 consensus_5264#1 AAAAATGACGAAAAGAAACCAAACAACACAATATAGCAAAAGTAAGTTAAATGGATCTGT 276 **** * *** ****** ** * ** * * ** ** **** **** * * * consensus_5264#0 ATTAATAATACGCATATAAAAATAGTAAAAAAAAACACACACACAGTAGATAATAGAAGG 357 consensus_5264#1 -TTAAGGA---------AAAGAGAGCGAAAAAATACGAACA-AAAAAAAACGAGACAAAC 325 **** * *** * ** ****** ** *** * * * * * * ** consensus_5264#0 TATTTAACAGGCGGCAAACATTTAAGATGGTAAGATGGTAAATTAAAGCTGAACCTCCCC 417 consensus_5264#1 CAAGAGCAAAACAAAACGAATAACAAATGAAACGAAGACAAATTATTG------------ 373 * * * * ** * *** * ** * ****** * consensus_5264#0 CCAATAATAAGCCCATAAAGCCGAAACATTGTAGAAAGTTAGTTAGAATTTTGTTAAATT 477 consensus_5264#1 ------------------------------------------------------------ consensus_5264#0 ATATATAAATGTAAGCCCAGTGTAGAACCAACCAATAAAGATGGTAAGATGGTAAATTAA 537 consensus_5264#1 ------------------------------------------------------------ consensus_5264#0 AGCTGAACCTCC 549 consensus_5264#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||