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Anopheles gambiae
cluster # 5269 cluster # 5269       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5269#0 length = 891 sequences # 2  
consensus_5269#1 length = 814 sequences # 2  

consensusID : consensus_5269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 891
fasta sequence
                              [ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAACGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACAACAACCGACAAGCGCAAGAAGAANGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGAGCAGGTGAGCTTCGGTACGCGTCGTGGCGGNTCGGNCGGTCGTCCCGCCGGAAGATCCGCTGGACCCATGTTCCCCGTTACGTTTGGCAGCACCAATGGCGGTGCGATCGCTATTGCTAACAGCTACAGTACNGGAAAGGGTGGATCGGCTACCAGCCATGCCACCGCTTA]

[+] EMBL BX624525             [ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAACGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACAACAACCGACAAGCGCAAGAAGAANGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGAGCAGGTGAGCTTCGGTACGCGTCGTGGCGGNTCGGNCGGTCGTCCCGCCGGAAGAT                                                                                                                   ]
[+] EMBL BX620300             [                                                                                                                                                                                                                                                             ATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGNAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACGACAACCGACAAGCGCAAGAAGAAGGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGAACAGGTGAGCTTCGGTACGCGTCGTGGCGGTTCGGCCGGTCGTCCCGCCGGAGGGTCCGCTGGACCCATGTTCCCCGTTACGTTTGGCAGCACCAATGGCGGTGCGATCGCTATTGCTAACAGCTACAGTACNGGAAAGGGTGGATCGGCTACCAGCCATGCCACCGCTTA]


>consensus_5269#0 ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAA CGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGT GAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGT TGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCC GCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCA GCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCA ACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGG TACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGC GTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTT GGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCT GGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACAACAACCGACAAGCGCAA GAAGAANGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGA GCAGGTGAGCTTCGGTACGCGTCGTGGCGGNTCGGNCGGTCGTCCCGCCGGAAGATCCGC TGGACCCATGTTCCCCGTTACGTTTGGCAGCACCAATGGCGGTGCGATCGCTATTGCTAA CAGCTACAGTACNGGAAAGGGTGGATCGGCTACCAGCCATGCCACCGCTTA



consensusID : consensus_5269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 814
fasta sequence
                              [CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAACGTTCCCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGACGACAACCGACAAGCGCAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAAGACGNATCAGGAGGATGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTTCCGGCCGGTCGTCCGCCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT]

[+] EMBL BX467630             [CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAACGTTCCCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGACGACAACCGACAAGCGCAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAAGACGNATCAGGAGGATGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTTCCGGCCGGTCGTCCGCCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT]
[+] EMBL BX627912             [                                                                                                                     GTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGNCGACGACNACCGACAAGCGCAAGAA GAAGGTTACCGTGC                                                                                                                                     ]


>consensus_5269#1 CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAACGTTCCCGCGTAGCT TCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTG TAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTT GCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCAT GTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTA TCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAAC GAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGC TGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGA TGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACA GTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCC GCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGACGACAACCGACAAGCG CAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAAGACGNATCAGGAGGA TGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTTCCGGCCGGTCGTCCG CCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5269#0      ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAA 60
consensus_5269#1      ---------------CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAA 45
                                      * **  *    * *  ****************************

consensus_5269#0      CGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGT 120
consensus_5269#1      CGTTCCCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGT 105
                      *** * ******************************************************

consensus_5269#0      GAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGT 180
consensus_5269#1      GAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGT 165
                      ********************************************** *************

consensus_5269#0      TGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCC 240
consensus_5269#1      TGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCC 225
                      ************************************************************

consensus_5269#0      GCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCA 300
consensus_5269#1      GCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCA 285
                      ************************************************************

consensus_5269#0      GCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCA 360
consensus_5269#1      GCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCA 345
                      ************************************************************

consensus_5269#0      ACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGG 420
consensus_5269#1      ACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGG 405
                      ************************************************************

consensus_5269#0      TACGATTCTCAAGG------------------ATCCTGCTGTGGAGGGTTACCCTTCGGT 462
consensus_5269#1      TACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGT 465
                      **************                  ****************************

consensus_5269#0      GCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAG 522
consensus_5269#1      GCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAG 525
                      ************************************************************

consensus_5269#0      CGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCT 582
consensus_5269#1      CGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCT 585
                      ************************************************************

consensus_5269#0      AGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGAC 642
consensus_5269#1      AGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGAC 645
                      ******************************************** ***************

consensus_5269#0      AACAACCGACAAGCGCAAGAAG-AANGTTACCGTGCAGCTCGATTCGG-CCTCGGCTGAA 700
consensus_5269#1      GACAACCGACAAGCGCAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAA 705
                       ********************* ** ********************** ***********

consensus_5269#0      GACGA-TCAGGAGGATG--AAGAGCAGGTGAG--CTTCGGTACG-CGTCGT--GGCGGNT 752
consensus_5269#1      GACGNATCAGGAGGATGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTT 765
                      ****  ***********  *  * ********   ********* ****    ***** *

consensus_5269#0      C-GGNCGGTCGTCCCGCCGGAAGATCCGCTGGACCCA-TGTTCCCCGTTACGTTTGGCAG 810
consensus_5269#1      CCGGCCGGTCGTCCGCCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT----------- 814
                      * ** *********  * * * * **** *******  ********* *           

consensus_5269#0      CACCAATGGCGGTGCGATCGCTATTGCTAACAGCTACAGTACNGGAAAGGGTGGATCGGC 870
consensus_5269#1      ------------------------------------------------------------
                                                                                  

consensus_5269#0      TACCAGCCATGCCACCGCTTA 891
consensus_5269#1      ---------------------
                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)