These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 891 fasta sequence [ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAACGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACAACAACCGACAAGCGCAAGAAGAANGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGAGCAGGTGAGCTTCGGTACGCGTCGTGGCGGNTCGGNCGGTCGTCCCGCCGGAAGATCCGCTGGACCCATGTTCCCCGTTACGTTTGGCAGCACCAATGGCGGTGCGATCGCTATTGCTAACAGCTACAGTACNGGAAAGGGTGGATCGGCTACCAGCCATGCCACCGCTTA] [+] EMBL BX624525 [ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAACGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACAACAACCGACAAGCGCAAGAAGAANGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGAGCAGGTGAGCTTCGGTACGCGTCGTGGCGGNTCGGNCGGTCGTCCCGCCGGAAGAT ] [+] EMBL BX620300 [ ATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGNAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGACGACAACCGACAAGCGCAAGAAGAAGGTTACCGTGCAGCTCGATTCGGCCTCGGCTGAAGACGATCAGGAGGATGAAGAACAGGTGAGCTTCGGTACGCGTCGTGGCGGTTCGGCCGGTCGTCCCGCCGGAGGGTCCGCTGGACCCATGTTCCCCGTTACGTTTGGCAGCACCAATGGCGGTGCGATCGCTATTGCTAACAGCTACAGTACNGGAAAGGGTGGATCGGCTACCAGCCATGCCACCGCTTA] consensusID : consensus_5269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAACGTTCCCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGACGACAACCGACAAGCGCAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAAGACGNATCAGGAGGATGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTTCCGGCCGGTCGTCCGCCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT] [+] EMBL BX467630 [CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAACGTTCCCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGTGAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGACGACAACCGACAAGCGCAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAAGACGNATCAGGAGGATGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTTCCGGCCGGTCGTCCGCCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT] [+] EMBL BX627912 [ GTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGTTGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCCGCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCAGCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCAACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGGTACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGTGCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAGCGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCTAGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGNCGACGACNACCGACAAGCGCAAGAA GAAGGTTACCGTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5269#0 ACTTTCAGGCTAAAGAAAAACAGAAGCCAATCAACGATTTAGAATAAAGTTTTCTCCAAA 60 consensus_5269#1 ---------------CAGAATCGCGCACGAGGAACGATTTAGAATAAAGTTTTCTCCAAA 45 * ** * * * **************************** consensus_5269#0 CGTGCTCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGT 120 consensus_5269#1 CGTTCCCGCGTAGCTTCGCATTCAAACGTGTTTCAAACGGCAGTGAGTGGTTCCCGGTGT 105 *** * ****************************************************** consensus_5269#0 GAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGTCGTTCTCAAGCGT 180 consensus_5269#1 GAATTAAGGCGTGTGTAGTGCGTGTGGCATACATTTAGGCGTCATGCCGTTCTCAAGCGT 165 ********************************************** ************* consensus_5269#0 TGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCC 240 consensus_5269#1 TGCCGTGTTGGCGTTGCTGTGTGGCGTTGGGCTTTGCGCGGCCTATCCCTATCCCTATCC 225 ************************************************************ consensus_5269#0 GCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCA 300 consensus_5269#1 GCAGAATGCGTTCATGTACTACCGCAATGCACTTCCGGTGATGGCGTACCCTCAGCTGCA 285 ************************************************************ consensus_5269#0 GCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCA 360 consensus_5269#1 GCAAACCGCCATGTATCAGCACGCAATGTACCAGAACCAGCGGCTACGGCAGAACTATCA 345 ************************************************************ consensus_5269#0 ACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGG 420 consensus_5269#1 ACGTCGTTCGGCAACGAGCGGCGTGGCCGCATTTGCCGCCGGAGACAACATCGCCACCGG 405 ************************************************************ consensus_5269#0 TACGATTCTCAAGG------------------ATCCTGCTGTGGAGGGTTACCCTTCGGT 462 consensus_5269#1 TACGATTCTCAAGGCTGACTGCCGACCCGCAGATCCTGCTGTGGAGGGTTACCCTTCGGT 465 ************** **************************** consensus_5269#0 GCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAG 522 consensus_5269#1 GCAGTCGTTTGCCGATGCGTACCCAGCGGACGCGCTGCCCGAGAATGAGATCCCGCTCAG 525 ************************************************************ consensus_5269#0 CGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCT 582 consensus_5269#1 CGACGATGGTGGACAGTTGGAGCAGGATGGAAATGCTGGGGGCGAGCTAGACTTTGCGCT 585 ************************************************************ consensus_5269#0 AGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGCGCCGCTAGTGCCGAC 642 consensus_5269#1 AGACAACGAGGAGCCGCTGGAGGATGTGCCGGCTGTTGCTGCTGGGCCGCTAGTGCCGAC 645 ******************************************** *************** consensus_5269#0 AACAACCGACAAGCGCAAGAAG-AANGTTACCGTGCAGCTCGATTCGG-CCTCGGCTGAA 700 consensus_5269#1 GACAACCGACAAGCGCAAGAAGGAAGGTTACCGTGCAGCTCGATTCGGGCCTCGGCTGAA 705 ********************* ** ********************** *********** consensus_5269#0 GACGA-TCAGGAGGATG--AAGAGCAGGTGAG--CTTCGGTACG-CGTCGT--GGCGGNT 752 consensus_5269#1 GACGNATCAGGAGGATGCAAGAAACAGGTGAGGCTTTCGGTACGGCGTCAGTGGGCGGTT 765 **** *********** * * ******** ********* **** ***** * consensus_5269#0 C-GGNCGGTCGTCCCGCCGGAAGATCCGCTGGACCCA-TGTTCCCCGTTACGTTTGGCAG 810 consensus_5269#1 CCGGCCGGTCGTCCGCCGGAAGGGTCCGNTGGACCCNATGTTCCCCGGT----------- 814 * ** ********* * * * * **** ******* ********* * consensus_5269#0 CACCAATGGCGGTGCGATCGCTATTGCTAACAGCTACAGTACNGGAAAGGGTGGATCGGC 870 consensus_5269#1 ------------------------------------------------------------ consensus_5269#0 TACCAGCCATGCCACCGCTTA 891 consensus_5269#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||