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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1009 fasta sequence
[CCGCTCGGTATTGTCTCCCTCCATCACGGGATATACCGTTTTATATTTTCGAAGACAATATTAAATTTTGTTACTTCATCCACAGCTACAGTTACTCTCTGGAGTGTGTACTGATACGCTGTCAGATAAAGGCAAACAAATTTAAACTAGCGCGTTAAATTAAATAACGATAACGATCCAGTTCATCTTAAACGTGTGTCTAATTCATTTTTGTTGTGTAATTACTTACAGTTGTAAAACATCACGTTACATACGATACTGGCAACAATTGGTGTGAAATACCGAACTAAAGTAAAATTTTGGTATGCGTTTTGTTGAAGGTGATGCAGTGAAGATGCCATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCAGTGATACTTACCTGTTATTCATCAGTTCAACGACGCTGCTAAACGACCAAAGTTCTTCATAATCGCACGAAAGCACTAGACGCAGTTAGGGTGGTACATCTGGGAGTGTGCGGGTTACTTGGAAGATTTGATATTGGGTTAAATAAATCACTGCATGATTCTCTGTCTTCCGATATTGTACAAGTGAAATGTCAGATGCTGGGATGAAGGTACCATAACTGCAACGGAAGTTGCGATCGTGATTGTTCGTGTATCGGTTATTGGAAATCATCTGCTTCATTTTTAAAGGGTCAAACGCGCAGGGTTCCGAAAGGCAAAAGGGGAGCATCTAACAACAAGTTTTTGTGAAAGATATGAATGTGTCGTGATGATGTGGTAATAGTGACAGTTCGAACAACAGTTTGTAAGTGAGAAGGTACTATCAGGTAAGTAATGTGTTGTAATTTGTTCTCTTTGCTCAACTCATCTGATTCAGTTGTCGCACATGCTGCTGAACTCTCTGTGACGTGTGTGAAGTGAGAATGNTTCACCGGCAATACGTTTCAGGGAGTTTAGCAAGCATGCACACAGTATCAGCTCTGNTGACCATTACTGTAATAAATATGTATGA]
[+] EMBL BM579512 [CCGCTCGGTATTGTCTCCCTCCATCACGGGATATACCGTTTTATATTTTCGAAGACAATATTAAATTTTGTTACTTCATCCACAGCTACAGTTACTCTCTGGAGTGTGTACTGATACGCTGTCAGATAAAGGCAAACAAATTTAAACTAGCGCGTTAAATTAAATAACGATAACGATCCAGTTCATCTTAAACGTGTGTCTAATTCATTTTTGTTGTGTAATTACTTACAGTTGTAAAACATCACGTTACATACGATACTGGCAACAATTGGTGTGAAATACCCAACTAAAGTGGAATTTTGGTATGCGTTTTGTTGAAGGTGATGCAGTGAAGATACCATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCAGTGATACTTACCTGTTATTCATCAGTTCAACGGCGATGCTAAACGACCAAAGATCTTCATAATCGCTTGAAAGCACTAGACGCAGTTAGGATGGTACATCTGGGAGTGTGCGGGTTAAGTGAATGATTTGATAT ]
[+] EMBL BX613005 [ TCGAAGACAATATTAAATTTTGTTACTTCATCCACAGCTACAGTTACTCTCTGGAGTGTGTACTGATACGCTGTCAGATAAAGGCAAACAAATTTAAACTAGCGCGTTAAATTAAATAACGATAACGATCCAGTTCATCTTAAACGTGTGTCTAATTCATTTTTGTTGTATAATTACTTACAGTTGTAAAACATCACGTTTCATACGATACTGGCAACAATTGGTGTGAAATACCGAACTAAAGTAAAATTTTGGTATGCGTTTTGTTGAAGGT ATGCAGTGAAGATGCCATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCAGTGATACTTACCTGTTATTCATCAGTTCAACGACGCTGCTAAACGACCAAAGTTCTTCATAATCGCACGAAAGCACTAGACGCAGTTAGGGTGGTACATCTGGGAGTGTGCGGTTTACTTGGAAGATTTGATATTGGGTTAAATAAATCACTGCATGATTCTCTGTCTTCCGATATTGTACAAGTGAAATGTCAGATGCTGGGATGAAGGTACCATAACTGCAACGGAAGTTGCGATCGTGATTGTTCGTGTATCGGTTATTGGAAATCATCTGCTTCATTTTTAAAGGGTCAAACGCGCAGGGTTCCGAAAGGCAAAAGGGGAGCATCTAACAACAAGTTTTTGTGAAAGATATGAATGTGTCGTGATGATGTGGTAATAGTGACAGTTCGAACAACAGTTTGTAA ]
[+] EMBL BX625297 [ TGGTGTGAAATACCGAACTAAAGTAAAATTTTGGTATGCGTTTTGTTGAAGGTGATGCAGTGAAGATGCCATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCAGTGATACTTACCTGTTATTCATCAGTTCAACGACGCTGCTAAACGACCAAAGTTCTTCATAATCGCACGAAAGCACTAGACGCAGTTAGGGTGGTACATCTGGGAGTGTGCGGGTTACTTGGAAGATTTGATATTGGGTTAAATAAATCACTGCATGATTCTCTGTCTTCCGATATTGTACAAGTGAAATGTCAGATGCTGGGATGAAGGTACCATAACTGCAACGGAAGTTGCGATCGTGATTGTTCGTGTATCGGTTATTGGAAATCATCTGCTTCATTTTTAAAGGGTCAAACGCGCAGGGTTCCGAAAGGCAAAAGGGGAGCATCTAACAACAAGTTTTTGTGAAAGATATGAATGTGTCGTGATGATGTGGTAATAGTGACAGTTCGAACAACAGTTTGTAAGTGAGAAGGTACTATCAGGTAAGTAATGTGTTGTAATTTGTTCTCTTTGCTCAACTCATCTGATTCAGTTGTCGCACATGCTGCTGAACTCTCTGTGACGTGTGTGAAGTGAGAATGNTTCACCGGCAATACGTTTCAGGGAGTTTAGCAAGCATGCACACAGTATCAGCTCTGNTGACCATTACTGTAATAAATATGTATGA]
consensusID : consensus_5273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 942 fasta sequence
[CAGAATCGCCCGAGGTTATATTTGTTTTTACGACAGGTTTATCAAACCCCATNGTTAACATCGAACACGATTCACTCAACAGACGGTGGAAACACAATGTGTGACACCTTGATTAGATGCCGTGTATGTGTCTAAGTTGGTATGCTGATTGCAGGAAAATGCGCTATTACGTACATTACAAAGAATGGTCCGAATGTCTTGCAGGTCGCCAAGATGCAATACCATGGAAGTTGTAAAACATCACGTTTCATACGATACTGNGCAACAATTGGCTGTGAAATACCGAACTAAAGTAACCATNCNCGGTATGCGTTCCGTCGANGGTGATGCNCGTGAAGNATGCCATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCAGTGATACTTACCTGTTATTCATCAGTTCAACTGACGCTGCTAAACGACAAAGTTCTTCATAATCGCACGAAAGCACTAGACGCAGTTANGGGTGGTACATCTGGGAGTGTGCGGGTTACTTGGAAGATTNGACTATCTGGGTTAACTAAATCACTGCATGATTCTCTGTACTTCCGATATTGTACAAGTGCAAATGTCAGATGCTGGGATGAAGGTAACCATAACTGCCACGNAAGTNTAGCGATCGTGATATGTACGTGTATCGGTTATTGGAAATCATCTGCTATCATANAANCAAGGGTCAAACGCGCAGGGTNCCGAANGGCAAACACGGGGGAAACCNNTCTAAACCAACCAACGGTTCACCAAGGGNTGNAACANCGCAACTNACTGCCACCTGCNGGCATCCAGCNCTGGCACCNTCGCACCNTCGCCTTNGCNACACACCCTACGNCCTGGACNCCCAGCTCACCCNCACACCCCANNCCAGGTTATCAGGGCNACAACAAACTGCAGCAACAGANGGTATACCTAATCN]
[+] EMBL AL697326 [CAGAATCGCCCGAGGTTATATTTGTTTTTACGACAGGTTTATCAAACCCCATNGTTAACATCGAACACGATTCACTCAACAGACGGTGGAAACACAATGTGTGACACCTTGATTAGATGCCGTGTATGTGTCTAAGTTGGTATGCTGATTGCAGGAAAATGCGCTATTACGTACATTACAAAGAATGGTCCGAATGTCTTGCAGGTCGCCAAGATGCAATACCATGGAAGTTGTAAAACATCACGTTTCATACGATACTGNGCAACAATTGGCTGTGAAATACCGAACTAAAGTAACCATNCNCGGTATGCGTTCCGTCGANGGTGATGCNCGTGAAGNATGCCATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCAGTGATACTTACCTGTTATTCATCAGTTCAACTGACGCTGCTAAACGACAAAGTTCTTCATAATCGCACGAAAGCACTAGACGCAGTTANGGGTGGTACATCTGGGAGTGTGCGGGTTACTTGGAAGATTNGACTATCTGGGTTAACTAAATCACTGCATGATTCTCTGTACTTCCGATATTGTACAAGTGCAAATGTCAGATGCTGGGATGAAGGTAACCATAACTGCCACGNAAGTNTAGCGATCGTGATATGTACGTGTATCGGTTATTGGAAATCATCTGCTATCATANAANCAAGGGTCAAACGCGCAGGGTNCCGAANGGCAAACACGGGGGAAACCNNTCTAAACCAACCAACGGTTCACCAAGGGNTGNAACANCGCAACTNACTGCCACCTGCNGGCATCCAGCNCTGGCACCNTCGCACCNTCGCCTTNGCNACACACCCTACGNCCTGGACNCCCAGCTCACCCNCACACCCCANNCCAGGTTATCAGGGCNACAACAAACTGCAGCAACAGANGGTATACCTAATCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5273#0 -----CCGCTCGGTATTGTCTCCCTCCATCACGGGATATACCGTTTTATATTTTCGAAGA 55
consensus_5273#1 CAGAATCGCCCGAGGTTATATTTGTTT-TTACGACAGGT----TTATCAAACCCCATNGT 55
*** ** ** * * * * *** * * ** * * * *
consensus_5273#0 CAATATTAAATTTTGTTACTTCATCCACAGCTACAGTTACTCTCTGGAGTGTGTACTGAT 115
consensus_5273#1 TAACATCGAACACGATTCACTCAACAGACGGTGGAAACAC-------AATGTGT---GAC 105
** ** ** ** *** * * * * ** * ***** **
consensus_5273#0 ACGCTG-TCAGATAAAGGCAAACAAATTTAAACTAGCGCGTTAAATTAAATAACGATAAC 174
consensus_5273#1 ACCTTGATTAGATGCCG-TGTATGTGTCTAAGTTGGTATGCTGATTGCAGGAAAATGCGC 164
** ** * **** * * * *** * * * * * * * ** *
consensus_5273#0 GATCCAGTTCATCTTAAA--------CGTGTGTCTAATTCATTTTTGTTGTGTAATTACT 226
consensus_5273#1 TATTACGTACATTACAAAGAATGGTCCGAATGTCTTGCAGGTCGCCAAGATGCAATACCA 224
** ** *** *** ** ***** * ** *** *
consensus_5273#0 TACA-GTTGTAAAACATCACGTTACATACGATACTGG-CAACAATTGG-TGTGAAATACC 283
consensus_5273#1 TGGAAGTTGTAAAACATCACGTTTCATACGATACTGNGCAACAATTGGCTGTGAAATACC 284
* * ****************** ************ ********** ***********
consensus_5273#0 GAACTAAAGTAA--AATTTTGGTATGCGTTTTGTTGAAGGTGATGCA-GTGAAGA-TGCC 339
consensus_5273#1 GAACTAAAGTAACCATNCNCGGTATGCGTTCCGTCGANGGTGATGCNCGTGAAGNATGCC 344
************ * ********** ** ** ******** ****** ****
consensus_5273#0 ATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCA 399
consensus_5273#1 ATCCAATACACAAGACGCATGGTATTCGGGAGTACTGCATAATTCCAAGAGTTTATATCA 404
************************************************************
consensus_5273#0 GTGATACTTACCTGTTATTCATCAGTTCAAC-GACGCTGCTAAACGACCAAAGTTCTTCA 458
consensus_5273#1 GTGATACTTACCTGTTATTCATCAGTTCAACTGACGCTGCTAAACGAC-AAAGTTCTTCA 463
******************************* **************** ***********
consensus_5273#0 TAATCGCACGAAAGCACTAGACGCAGTTAGGG-TGGTACATCTGGGAGTGTGCGGGTTAC 517
consensus_5273#1 TAATCGCACGAAAGCACTAGACGCAGTTANGGGTGGTACATCTGGGAGTGTGCGGGTTAC 523
***************************** ** ***************************
consensus_5273#0 TTGGAAGATTTGA-TAT-TGGGTTAAATAAATCACTGCATGATTCTCTGT-CTTCCGATA 574
consensus_5273#1 TTGGAAGATTNGACTATCTGGGTTAACTAAATCACTGCATGATTCTCTGTACTTCCGATA 583
********** ** *** ******** *********************** *********
consensus_5273#0 TTGTACAAGTG-AAATGTCAGATGCTGGGATGAAGGTA-CCATAACTGCAACGGAAGTT- 631
consensus_5273#1 TTGTACAAGTGCAAATGTCAGATGCTGGGATGAAGGTAACCATAACTGCCACGNAAGTNT 643
*********** ************************** ********** *** ****
consensus_5273#0 -GCGATCGTGAT-TGTTCGTGTATCGGTTATTGGAAATCATCTGCT-TCATTTTTA-AAG 687
consensus_5273#1 AGCGATCGTGATATGTACGTGTATCGGTTATTGGAAATCATCTGCTATCATANAANCAAG 703
*********** *** ***************************** **** ***
consensus_5273#0 GGTCAAACGCGCAGGGTTCCGAAAGGCAAAAGGGGAGCATCTAACAACAAGTTTTTGTGA 747
consensus_5273#1 GGTCAAACGCGCAGGGTNCCGAANGGCAAACACGGGGGAAACCNNTCTAAACCAAC-CAA 762
***************** ***** ****** ** * * ** *
consensus_5273#0 AAGATATGAATGTGTCGTGATGATGTGGTAATAGTGACAGTT-CGAACAACAGTTTGTAA 806
consensus_5273#1 CGGTTCACCAAGGGNTGNAACANCGCAACTN-ACTGCCACCTGCNGGCATCCAGCNCTG- 820
* * * * * * * * * ** ** * * ** * *
consensus_5273#0 GTGAGAAGGTACTATCAGGTAAGTAATGTGTTGTAATTTGTTCTCTTTGCTCAACTCATC 866
consensus_5273#1 GCACCNTCGCACCNTCGCCTTNGCNACACACCCTA---CGNCCTGGACNCCCAGCTCACC 877
* * ** ** * * * ** * ** * ** **** *
consensus_5273#0 TGATTCAGTTGTCGCACATGCTGCTGAACTCTCTGTGACGTGTGTGAAGTGAGA--ATGN 924
consensus_5273#1 CN-CACACCCCANNC-CAGGTTATCAGGGCNACAACAAACTGCAGCAACAGANGGTATAC 935
** * ** * * * * ** ** ** **
consensus_5273#0 TTCACCGGCAATACGTTTCAGGGAGTTTAGCAAGCATGCACACAGTATCAGCTCTGNTGA 984
consensus_5273#1 CTAATCN----------------------------------------------------- 942
* * *
consensus_5273#0 CCATTACTGTAATAAATATGTATGA 1009
consensus_5273#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||