These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence [CCGAACGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTACGAGCTCCGCCCGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG] [+] EMBL BM587683 [CCGAAGTGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTAC ] [+] EMBL BM606111 [ cCGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAGCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTACGAGCTCCGCCCGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG] [+] EMBL BM603514 [ ccGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTTTGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGAAACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGTGCCTGGTGGCCGCCGGCAGTGTCAGTGGAACGCAGAAGCTCCAGGAGCGCTATAGCTGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCCTCAAGCAACAGGCACTGGCGCGGGGCGACTACGTGCCCACGAACGGTCTGCCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACATTGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTCGAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAAGTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCAACTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGA ] consensusID : consensus_5276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ATCCNAGTAAGCAGTTTTGGGACCAGTGTGCCAGAGTTCTATGGAGAAGCGAACAACACACATCAGAAACAGAAACGTTGACCANAAGGCACGTGTACGGTGGAATGTTGCTGATATGTACGTGCTGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATACTGGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGCTGCGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCCTCGACGCTTAACTACATTGACATGAACAGACACCGTCCGGTTCGCGGCCTCATCCCCTAACCGGACTGGTCCTCGA] [+] EMBL AL697413 [ATCCNAGTAAGCAGTTTTGGGACCAGTGTGCCAGAGTTCTATGGAGAAGCGAACAACACACATCAGAAACAGAAACGTTGACCANAAGGCACGTGTACGGTGGAATGTTGCTGATATGTACGTGCTGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATACTGGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGCTGCGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAGAACAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCCTCGACGCTTAACTACATTGACATGAACAGACACCGTCCGGTTCGCGGCCTCATCCCCTAACCGGACTGGTCCTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5276#0 CCGAACGGGCGCGCCGAGCAGTGTGTGAGATCCGGAGAAGCTACCCCGAAGCCAAGTTTT 60 consensus_5276#1 ------------------------------------------ATCCNAGTAAGCAGTTTT 18 * ** ****** consensus_5276#0 TGGGACCAAGTTGTGCACAGAAGTTCCTTAGTGGCAGAAGCGAACAAACACACAATCAGA 120 consensus_5276#1 -GGGACCA----GTGTGCCAGAGTTCTATGG----AGAAGCGAACAA-CACACA-TCAGA 67 ******* *** * ***** * * ************ ****** ***** consensus_5276#0 AACAGAAACGTTTGAACAAAAAGGACACGATGTACGGTGGAATGTTGCTGATGGTAGCGT 180 consensus_5276#1 AACAGAAACGTT-GACCANAAGGCACG---TGTACGGTGGAATGTTGCTGATATGTACGT 123 ************ ** ** ** * ** ********************** *** consensus_5276#0 GCCTGGTGGCCGCCGG-CAGTG-TCAGTGGAACGCAGAAGC--TCCAGGAGCGCTATAGC 236 consensus_5276#1 GC-TGGTGGGCGCCGGGCAGTGGTCAGTGGAACGCAGAAANACTCCACGAGCGCTATACT 182 ** ****** ****** ***** **************** **** ********** consensus_5276#0 TGGCAGCAGCTGGACTTTGTCTTCCCCAATCAACGCC--TCAAGCAACAGGCACTGGC-G 293 consensus_5276#1 GGCGAGCAGCTGGACTTTGTCTTCCCCAATCAAAAGCGCTCAAGCAACAGGCACTGGCTG 242 * ***************************** * ******************* * consensus_5276#0 CGGGGCGACTAC-GTGCCCACGAAC-GGTCTGCCG--GTCGGTATCGAGCGCTGGGAGAA 349 consensus_5276#1 CGGGGCGACTACTGTGTCCACGAACAGGTCTGTCGCGGTCGGTATCGAGCGCTGGGAGAA 302 ************ *** ******** ****** ** *********************** consensus_5276#0 CAAGCTGTTCGTCTCGGTACCAAGATGGAAGGATGGTATCCCCTCGACGCTTAACTACAT 409 consensus_5276#1 CAAGCTGTTCGTCTCGGGTACAAGATGGAAGGATGGTATCCC-TCGACGCTTAACTACAT 361 ***************** ********************** ***************** consensus_5276#0 TGACATGAACCAGACACCGTCCGGTTCGCCGGCCCTCATCCCCTACCCGGACTGGTCCTC 469 consensus_5276#1 TGACATGAAC-AGACACCGTCCGGTTCGCGG--CCTCATCCCCTAACCGGACTGGTCCTC 418 ********** ****************** * ************ ************** consensus_5276#0 GAACGTGGCGGGCGACTGTGCCAACGGTCTGTCCACCGTGTACCGCATCAAGGCGGACAA 529 consensus_5276#1 GA---------------------------------------------------------- 420 ** consensus_5276#0 GTGCGGTCGACTGTGGGCCCTCGACACCGGTACCGTCGGCATCGGCAACACTACGCAGCA 589 consensus_5276#1 ------------------------------------------------------------ consensus_5276#0 GCTCTGCCCGTACGCGCTGAACGTTTGGGATCTGAAGACGAACCGTCGGCTGCGCCGGTA 649 consensus_5276#1 ------------------------------------------------------------ consensus_5276#0 CGAGCTCCGCCCGGAGGACACCAACGCCAACACGTTCATCGCCAACATTGCCATCG 705 consensus_5276#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||