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Anopheles gambiae
cluster # 5278 cluster # 5278       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5278#0 length = 1055 sequences # 3  
consensus_5278#1 length = 816 sequences # 1  

consensusID : consensus_5278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1055
fasta sequence
                              [CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAGTATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTGGACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTGAAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGGTGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGTGGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCGCTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCCATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACT-AGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTT-CGATCTGGGTTGGAATATCTGAATGTGATTC]

[+] EMBL BM596570             [CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAGTATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTGGACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTGAAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGGTGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGTGGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCGCTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCCATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGT                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM601638             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACT AGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTT CGATCTGGGTTGGAATATCTGAATGTGATTC]
[+] EMBL BM590220             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccgCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACTAAGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTTCCAATCTGGGGTGGAATATCTGAAT       ]


>consensus_5278#0 CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAG TATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTG GACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTG AAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGG TGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGT GGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCG CTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCC ATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTA ACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCT TCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGC ACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGC ACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCA AGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGC AGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAAT GGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCC GGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACTAGCGATGGTGGTGC AGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTC CTTTCGATCTGGGTTGGAATATCTGAATGTGATTC



consensusID : consensus_5278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 816
fasta sequence
                              [GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCACGGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA]

[+] EMBL AL697470             [GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCACGGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA]


>consensus_5278#1 GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCG GTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGG CTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTAT CGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACC AGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAC GGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTT AGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGT AAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCC ATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACT AAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCT GCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTC GCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAG TACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATA ACATATACCTNAGANTACACGAGAGGGGGAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5278#0      CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAG 60
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      TATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTG 120
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      GACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTG 180
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      AAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGG 240
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      TGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGT 300
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      GGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCG 360
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      CTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCC 420
consensus_5278#1      ------------------------------------------------------------
                                                                                  

consensus_5278#0      ATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTA 480
consensus_5278#1      -----GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGA--ACTACCTGTAGCAGGTA 53
                              ***     *************************   ******* ********

consensus_5278#0      ACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCT 540
consensus_5278#1      ACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGC-GCTTCGTCCTCCTCTTCGAACTCT 112
                      ******************** ** *********** ************************

consensus_5278#0      TCGTCCGGCTCCTCCTCCTCGTCCTCGT-CTTCCGTTCCGTCCTCCTCGACGATGGTCAG 599
consensus_5278#1      TCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAG 172
                      **************************** *******************************

consensus_5278#0      CACGGTATCGGTTG-GGCAGCAGCAGCACCAGCACC--GGCCAGC-GCAACG-ATTGAAC 654
consensus_5278#1      CACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAAC 232
                      ************** ************* *******  * ***** ****** *******

consensus_5278#0      AACGGCACCAGCAAC-GGAAGCAGAAGTGACGC-GTGCAGTTCGTCCGGGCTTGGCATTT 712
consensus_5278#1      AACGG-ACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTT 291
                      ***** ********* ***************** **************************

consensus_5278#0      CCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTA 772
consensus_5278#1      CCTACCCACGG-ACGGTGGC-AACCGGCCAGTGGCAGCAGCAGCAG--NCAGCAGCAGTA 347
                      ******** ** ******** ** ****** ***************   ***********

consensus_5278#0      ACG-GTAGCAGT--AGCATCAATA-GTAGCAACGTCAATGGCACCCTGC-CAG--CAGCA 825
consensus_5278#1      ACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCA 407
                      *** ********   ********* ******** **************  ***   ****

consensus_5278#0      GTG-AGCAGCAGTAA-TGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCC 883
consensus_5278#1      GTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCC 467
                      **  **** ******  ******* ************** ********************

consensus_5278#0      TCC-GCATCCTCC-TCCCCGGTCC-GTGACGACGATCGTT--CCACGTTCGATAATAG-- 936
consensus_5278#1      TCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAAT 527
                      *** **   **** ********** **** *******  *  *****     * ***   

consensus_5278#0      ---CAATAGTACTAGC--GATGGT--GGTG-CAGCTCAAATCT---GAAAGCAGGACGCA 985
consensus_5278#1      AGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAA 587
                          ***** ****    ******  **** ************    **  ***     *

consensus_5278#0      GCGGA-CGCAGTGGCGGG--CTGAAGTGTGTAATCGTC--CTTTCGATC--TGGGTTGGA 1038
consensus_5278#1      GCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGG 647
                      ***** *****  *****  *** *  *  *  * *     *  ** **  *      * 

consensus_5278#0      ATATCTGAATGTGATTC------------------------------------------- 1055
consensus_5278#1      ANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAG 707
                      * *   *   **    *                                           

consensus_5278#0      ------------------------------------------------------------
consensus_5278#1      NTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTA 767
                                                                                  

consensus_5278#0      -------------------------------------------------
consensus_5278#1      NGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA 816
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)