These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1055 fasta sequence [CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAGTATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTGGACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTGAAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGGTGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGTGGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCGCTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCCATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACT-AGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTT-CGATCTGGGTTGGAATATCTGAATGTGATTC] [+] EMBL BM596570 [CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAGTATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTGGACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTGAAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGGTGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGTGGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCGCTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCCATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGT ] [+] EMBL BM601638 [ ccgCGTGGATCGCCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACT AGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTT CGATCTGGGTTGGAATATCTGAATGTGATTC] [+] EMBL BM590220 [ ccgCTTGACACCTACCTGCAGCAGGTAACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTCTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGGGCAGCAGCAGCACCAGCACCGGCCAGCGCAACGATTGAACAACGGCACCAGCAACGGAAGCAGAAGTGACGCGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTAACGGTAGCAGTAGCATCAATAGTAGCAACGTCAATGGCACCCTGCCAGCAGCAGTGAGCAGCAGTAATGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCCTCCGCATCCTCCTCCCCGGTCCGTGACGACGATCGTTCCACGTTCGATAATAGCAATAGTACTAAGCGATGGTGGTGCAGCTCAAATCTGAAAGCAGGACGCAGCGGACGCAGTGGCGGGCTGAAGTGTGTAATCGTCCTTTCCAATCTGGGGTGGAATATCTGAAT ] consensusID : consensus_5278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence [GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCACGGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA] [+] EMBL AL697470 [GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGAACTACCTGTAGCAGGTAACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGCGCTTCGTCCTCCTCTTCGAACTCTTCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAGCACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAACAACGGACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTTCCTACCCACGGACGGTGGCAACCGGCCAGTGGCAGCAGCAGCAGNCAGCAGCAGTAACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCAGTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCCTCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAATAGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAAGCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGGANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAGNTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTANGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5278#0 CCGCATTATGCTTGCCCCACCTGCCAGACCTCGATGATGGACATGAACCAGCTGTGGGAG 60 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 TATCTGGACGCGGAGGTGGCCGCCACACCCATGCCAAAGGAGTACGCGAACTATTTCGTG 120 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 GACATTTTGTGCAAAGATTGCCACAAGGAGTCAACGGTAAAGTTCCACGTCGTTGGGCTG 180 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 AAGTGTACCCACTGCGGTGCGTACAACACCTGCCGGACCAAGACGAAAAACATGAACGGG 240 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 TGCAACAGCACGCCGCCACCCGGCGGCAGCAGCTCAGCCGGGGCGAGCAGTGCGGCGGGT 300 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 GGTACGGCCCAGTCGAACCCAGCTGCCGAAACGACGACCCCCTGGATACGGATGGTGCCG 360 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 CTGTCGATGGTGGAATCGGACGATAATGCCATCGATGACAGTGCCATCGATGACAGCGCC 420 consensus_5278#1 ------------------------------------------------------------ consensus_5278#0 ATTGACGACAGTGAAGATGAACGACTCGTGGATCGCCTTGACACCTACCTGCAGCAGGTA 480 consensus_5278#1 -----GCCCAGGTTTAATGAACGACTCGTGGATCGCCTTGA--ACTACCTGTAGCAGGTA 53 *** ************************* ******* ******** consensus_5278#0 ACGCCCGGTGGTGATGACGGTGCCAGCACGTCGGCCGCTTCGTCCTCCTCTTCGAACTCT 540 consensus_5278#1 ACGCCCGGTGGTGATGACGGGGCTAGCACGTCGGC-GCTTCGTCCTCCTCTTCGAACTCT 112 ******************** ** *********** ************************ consensus_5278#0 TCGTCCGGCTCCTCCTCCTCGTCCTCGT-CTTCCGTTCCGTCCTCCTCGACGATGGTCAG 599 consensus_5278#1 TCGTCCGGCTCCTCCTCCTCGTCCTCGTACTTCCGTTCCGTCCTCCTCGACGATGGTCAG 172 **************************** ******************************* consensus_5278#0 CACGGTATCGGTTG-GGCAGCAGCAGCACCAGCACC--GGCCAGC-GCAACG-ATTGAAC 654 consensus_5278#1 CACGGTATCGGTTGTGGCAGCAGCAGCAACAGCACCTGGACCAGCTGCAACGCATTGAAC 232 ************** ************* ******* * ***** ****** ******* consensus_5278#0 AACGGCACCAGCAAC-GGAAGCAGAAGTGACGC-GTGCAGTTCGTCCGGGCTTGGCATTT 712 consensus_5278#1 AACGG-ACCAGCAACTGGAAGCAGAAGTGACGCTGTGCAGTTCGTCCGGGCTTGGCATTT 291 ***** ********* ***************** ************************** consensus_5278#0 CCTACCCAAGGCACGGTGGCCAATCGGCCAATGGCAGCAGCAGCAGCAGCAGCAGCAGTA 772 consensus_5278#1 CCTACCCACGG-ACGGTGGC-AACCGGCCAGTGGCAGCAGCAGCAG--NCAGCAGCAGTA 347 ******** ** ******** ** ****** *************** *********** consensus_5278#0 ACG-GTAGCAGT--AGCATCAATA-GTAGCAACGTCAATGGCACCCTGC-CAG--CAGCA 825 consensus_5278#1 ACGCGTAGCAGTTAGGCATCAATAAGTAGCAACATCAATGGCACCCTGGACAGACNAGCA 407 *** ******** ********* ******** ************** *** **** consensus_5278#0 GTG-AGCAGCAGTAA-TGGACGGAGGGACGTAGCAGGCTCCCTCGTCGGCGTCCTCCTCC 883 consensus_5278#1 GTNGAGCACCAGTAAACGGACGGACGGACGTAGCAGGCTACCTCGTCGGCGTCCTCCTCC 467 ** **** ****** ******* ************** ******************** consensus_5278#0 TCC-GCATCCTCC-TCCCCGGTCC-GTGACGACGATCGTT--CCACGTTCGATAATAG-- 936 consensus_5278#1 TCCTGCGATCTCCATCCCCGGTCCCGTGAAGACGATCAGTTACCACGNGTNCTGATAAAT 527 *** ** **** ********** **** ******* * ***** * *** consensus_5278#0 ---CAATAGTACTAGC--GATGGT--GGTG-CAGCTCAAATCT---GAAAGCAGGACGCA 985 consensus_5278#1 AGCNAATAGNACTAAGCAGATGGTTGGGTGGCAGCTCAAATCTTGCAAAGACAGANGCAA 587 ***** **** ****** **** ************ ** *** * consensus_5278#0 GCGGA-CGCAGTGGCGGG--CTGAAGTGTGTAATCGTC--CTTTCGATC--TGGGTTGGA 1038 consensus_5278#1 GCGGAACGCAGCTGCGGGGACTGCAAAGCTTGGTAGGTAANTACCGGTCCCTACAACNGG 647 ***** ***** ***** *** * * * * * * ** ** * * consensus_5278#0 ATATCTGAATGTGATTC------------------------------------------- 1055 consensus_5278#1 ANACTAGGGGGTCGCGCACAATAATTCTNCANCTTAGGTCGAATCCCTCTGGTTAAGTAG 707 * * * ** * consensus_5278#0 ------------------------------------------------------------ consensus_5278#1 NTAGACGAACTAGTACTTGNAGGCACGGNAGACNCGACGAGTAGGCTTTCGACCNTCGTA 767 consensus_5278#0 ------------------------------------------------- consensus_5278#1 NGTAAGAAGAATAACATATACCTNAGANTACACGAGAGGGGGAAAAAAA 816 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||