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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 773 fasta sequence
[CCGCCCACGTCTGTTGCGGTTTCCTTTCACTTTTGGACCTTGGACCTTTGCAGAACACATGGATAGTTACCGCAAGAACTGACCATTGGGCAGAAGTAGTGATTGCTCTAGTCCCGCTGCTTTACACTGCTGGACGGTGTTTGAGCACATAAAAAGGATTTCAGTTTCTGTCTGACCTTACAACCAAATACAACAGTCATA-CCAACCAAAGCAATGGCCAGTGCGTTCACCATCACCGATATCGAGACGGATCTGGCCTGCCCGGGTGCGTCCTCCTTCGTTCAGATACAGCTGAACGATCTGACCGATTACCCGTTGGCCTCGGCCGGCGGCAATACACCACCTGCAGCGATTGTGCCGGCCAAGTTTCGCAACTACGCCGACCAGGTTCGCGACTTCCGCGTGTACGACGATGACGTGTGGATCGTGACGTACCCAAAGTGTGGCACCACCTGGACGCAGGAGATGGTCTGGCTGATCGCTCACGACCTGGACTATCAAACAGCCCGTGACGTCAATCTCAACACACGATCCCATTTTCTGGAAATCGGAGCCATTGCAGACAAGATACCGGTCGATACGGTGACGGTAGCAGCCAGCATGAAGCGTCCGCGGCACATTAAATCCCACCTGCCGATGGCGCTACTGCCCCGCCAGCTGTGGACGGTACAGCCGCGCATCGTGTACGTCGCCCGCAACCCGAAGGACGTGGCCGTGTCCTACCTGCACCACTATCGGATGATTATGGGCTACCGGGGCACCAAGGAAGCGTT]
[+] EMBL BM600818 [CCGCCCACGTCTGTTGCGGTTTCCTTTCACTTTTGGACCTTGGACCTTTGCAGAACACATGGATAGTTACCGCAAGAACTGACCATTGGGCAGAAGTAGTGATTGCTCTAGTCCCGCTGCTTTACACTGCTGGACGGTGTTTGAGCACATAAAAAGGATTTCAGTTTCTGTCTGACCTTACAACCAAATACAACAGTCATA CCAACCAAAGCAATGGCCAGTGCGTTCACCATCACCGATATCGAGACGGATCTGGCCTGCCCGGGTGCGTCCTCCTTCGTTCAGATACAGCTGAACGATCTGACCGATTACCCGTTGGCCTCGGCCGGCGGCAATACACCACCTGCAGCGATTGTGCCGGCCAAGTTTCGCAACTACGCCGACCAGGTTCGCGACTTCCGCGTGTACGACGATGACGTGTGGATCGTGACGTACCCAAAGTGTGGCACCACCTGGACGCAGGAGATGGTCTGGCTGATCGCTCACGACCTGGACTATCAAACA ]
[+] EMBL CNS08UXY [ CTTTACAGAACACATGGATAGTTACCGCAAGAACTGACCATTCCGCAGAAGTAGTGATTGCTCTAGTCCCGCTGCTTTACACTGCTGGACGGTGTTTGAGCACATAAAAAGGATTTCAGTTTCTGTCTGACCTTACAACCAAATACAACACTTGTACCCCGCCAAAGCAATGGCCAGTGCGTTCACCATTACCGATATCGAGACGGATCTGGCCTGCCCGGGTGCGTCCTCCTTCGTTCAGATACAGCTGAACGATCTGACCGATTACCCGTTGGCCTCGGCCGGCGGCAGTACACCACCAGCAGCGATCGTGCCGGCCAAGTTTCGCAACTACGCCGAGCAGGTGCGCGACTTCCGCGTGTACGACGATGAAGTGTGGATCGTGACGTACCCAAAGTGTGGCACCACTTGGACGCAGGAGATGGTCTGGCTGATCGCTCACGACCTGGACTATCAAACAGCCCGTGACGTCAATCTCAACACACGATCCCATTTTCTGGAAATCGGAGCCATTGCAGACAAGATACCGGTCGATACGGTGACGGTAGCAGCCAGCATGAAGCGTCCGCGGCACATTAAATCCCACCTGCCGATGGCGCTACTGC ]
[+] EMBL BM615655 [ ccgCTAGTCCCGCTGCTTTACACTGCTGGACGGTGTTTGAGCACATAAAAAGGATTTCAGTTTCTGTCTGACCTTACAACCAAATACAACAGTCATA CCAACCAAAGCAATGGCCAGTGCGTTCACCATCACCGATATCGAGACGGATCTGGCCTGCCCGGGTGCGTCCTCCTTCGTTCAGATACAGCTGAACGATCTGACCGATTACCCGTTGGCCTCGGCCGGCGGCAATACACCACCTGCAGCGATTGTGCCGGCCAAGTTTCGCAACTACGCCGACCAGGTTCGCGACTTCCGCGTGTACGACGATGACGTGTGGATCGTGACGTACCCAAAGTGTGGCACCACCTGGACGCAGGAGATGGTCTGGCTGATCGCTCACGACCTGGACTATCAAACAGCCCGTGACGTCAATCTCAACACACGATCCCATTTTCTGGAAATCGGAGCCATTGCAGACAAGATACCGGTCGATACGGTGACGGTAGCAACCAGCATGAAGCGTCCGCGGCACATTAAATCCCACCTGCCGATGTCGCTACTGCCCCGCCAGCTGTGGACGGTACAGCCGCGCATCGTGTACGTCGCCCGCAACCCGAAGGACGTGGCCGTGTCCTACCTGCACCACTATCGGATGATTATGGGCTACCGGGGCACCAAGGAAGCGTT]
consensusID : consensus_5280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[GCCCAGGGTTATGTGGATTGTGACGTACCCAACAGTGTGGCACACCTTGACGCAGGAGATGGTCTGGCTGATCTGCTCACGACCTGGACTATCAAACGTCCCGTGACGTCAATCTCAACACACGTTCCCATTTTCTGGAAATCGGAGCCATTGCAGACAAGATACCTGGTCTGATACGGTGACTTGTAGCAGCCCTGTATGAAGCGTCCGCGGCCCATTAAATCCCACCTGCCGATGNGCTGCTACTGCCCCGCAGCTGTGGACGGTAAAGCCTGCGCATCGTGTACGTCGCCCGCAACCCGAAGGATGTGGCCTGTGTCCTACCTGCACCACTATCGGATGATATATGGGCTACCTGGTGGCACCAAGGAAGCGTTCCTCGATGNGCCTGCTCGAGNGATCGCGGTAATGTATCTGTCCGCAAATTAGGCATGCGCTCGATNTCGGACGCTGAAAGAGGAACCCAACAGTACTGTATCTGACAGTATGAAAGCATGAAGCGGGATCTGCGAAGNCGTAATGCCCAAAGTGTGTACCTATAACAGGGAAAAGCTTCACCGACGAGCAGCTGGATGCGTNGGCCGTGCATTNATCGTACGATCAGATGAAGAAAAATCCATCGACAACAA]
[+] EMBL AL697538 [GCCCAGGGTTATGTGGATTGTGACGTACCCAACAGTGTGGCACACCTTGACGCAGGAGATGGTCTGGCTGATCTGCTCACGACCTGGACTATCAAACGTCCCGTGACGTCAATCTCAACACACGTTCCCATTTTCTGGAAATCGGAGCCATTGCAGACAAGATACCTGGTCTGATACGGTGACTTGTAGCAGCCCTGTATGAAGCGTCCGCGGCCCATTAAATCCCACCTGCCGATGNGCTGCTACTGCCCCGCAGCTGTGGACGGTAAAGCCTGCGCATCGTGTACGTCGCCCGCAACCCGAAGGATGTGGCCTGTGTCCTACCTGCACCACTATCGGATGATATATGGGCTACCTGGTGGCACCAAGGAAGCGTTCCTCGATGNGCCTGCTCGAGNGATCGCGGTAATGTATCTGTCCGCAAATTAGGCATGCGCTCGATNTCGGACGCTGAAAGAGGAACCCAACAGTACTGTATCTGACAGTATGAAAGCATGAAGCGGGATCTGCGAAGNCGTAATGCCCAAAGTGTGTACCTATAACAGGGAAAAGCTTCACCGACGAGCAGCTGGATGCGTNGGCCGTGCATTNATCGTACGATCAGATGAAGAAAAATCCATCGACAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5280#0 CCGCCCACGTCTGTTGCGGTTTCCTTTCACTTTTGGACCTTGGACCTTTGCAGAACACAT 60
consensus_5280#1 ------------------------------------------------------------
consensus_5280#0 GGATAGTTACCGCAAGAACTGACCATTGGGCAGAAGTAGTGATTGCTCTAGTCCCGCTGC 120
consensus_5280#1 ------------------------------------------------------------
consensus_5280#0 TTTACACTGCTGGACGGTGTTTGAGCACATAAAAAGGATTTCAGTTTCTGTCTGACCTTA 180
consensus_5280#1 ------------------------------------------------------------
consensus_5280#0 CAACCAAATACAACAGTCATACCAACCAAAGCAATGGCCAGTGCGTTCACCATCACCGAT 240
consensus_5280#1 ------------------------------------------------------------
consensus_5280#0 ATCGAGACGGATCTGGCCTGCCCGGGTGCGTCCTCCTTCGTTCAGATACAGCTGAACGAT 300
consensus_5280#1 ------------------------------------------------------------
consensus_5280#0 CTGACCGATTACCCGTTGGCCTCGGCCGGCGGCAATACACCACCTGCAGCGATTGTGCCG 360
consensus_5280#1 ------------------------------------------------------------
consensus_5280#0 GCCAAGTTTCGCAACTACGCCGACCAGGTTCGCGACTTCCGCGTGTACGACGATGACGTG 420
consensus_5280#1 -----------------------------------------------GCCCAGGGTTATG 13
* * **
consensus_5280#0 TGGATCGTGACGTACCCAA-AGTGTGGCACCACCTGGACGCAGGAGATGGTCTGGCTGAT 479
consensus_5280#1 TGGATTGTGACGTACCCAACAGTGTGGCAC-ACCTTGACGCAGGAGATGGTCTGGCTGAT 72
***** ************* ********** **** ************************
consensus_5280#0 C-GCTCACGACCTGGACTATCAAACAGCCCGTGACGTCAATCTCAACACACGATCCCATT 538
consensus_5280#1 CTGCTCACGACCTGGACTATCAAACGTCCCGTGACGTCAATCTCAACACACGTTCCCATT 132
* *********************** ************************* *******
consensus_5280#0 TTCTGGAAATCGGAGCCATTGCAGACAAGATACC-GGTC-GATACGGTGACG-GTAGCAG 595
consensus_5280#1 TTCTGGAAATCGGAGCCATTGCAGACAAGATACCTGGTCTGATACGGTGACTTGTAGCAG 192
********************************** **** *********** *******
consensus_5280#0 CCA-GCATGAAGCGTCCGCGGCACATTAAATCCCACCTGCCGATGG--CGCTACTGCCCC 652
consensus_5280#1 CCCTGTATGAAGCGTCCGCGGCCCATTAAATCCCACCTGCCGATGNGCTGCTACTGCCCC 252
** * **************** ********************** ***********
consensus_5280#0 GCCAGCTGTGGACGGTACAGCC-GCGCATCGTGTACGTCGCCCGCAACCCGAAGGACGTG 711
consensus_5280#1 GC-AGCTGTGGACGGTAAAGCCTGCGCATCGTGTACGTCGCCCGCAACCCGAAGGATGTG 311
** ************** **** ********************************* ***
consensus_5280#0 GCC-GTGTCCTACCTGCACCACTATCGGATGAT-TATGGGCTACCGGG--GCACCAAGGA 767
consensus_5280#1 GCCTGTGTCCTACCTGCACCACTATCGGATGATATATGGGCTACCTGGTGGCACCAAGGA 371
*** ***************************** *********** ** **********
consensus_5280#0 AGCGTT------------------------------------------------------ 773
consensus_5280#1 AGCGTTCCTCGATGNGCCTGCTCGAGNGATCGCGGTAATGTATCTGTCCGCAAATTAGGC 431
******
consensus_5280#0 ------------------------------------------------------------
consensus_5280#1 ATGCGCTCGATNTCGGACGCTGAAAGAGGAACCCAACAGTACTGTATCTGACAGTATGAA 491
consensus_5280#0 ------------------------------------------------------------
consensus_5280#1 AGCATGAAGCGGGATCTGCGAAGNCGTAATGCCCAAAGTGTGTACCTATAACAGGGAAAA 551
consensus_5280#0 ------------------------------------------------------------
consensus_5280#1 GCTTCACCGACGAGCAGCTGGATGCGTNGGCCGTGCATTNATCGTACGATCAGATGAAGA 611
consensus_5280#0 ------------------
consensus_5280#1 AAAATCCATCGACAACAA 629
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||