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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence
[CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA]
[+] EMBL BM631045 [CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGGTTTTTTTCCGGCG ]
[+] EMBL BM648238 [ ccGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACC GGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA]
consensusID : consensus_5284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGTGTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTACTCGCC]
[+] EMBL BM583273 [CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGTGTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTACTCGCC]
consensusID : consensus_5284#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGCACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCCCCGGGCGGAAACCCANCCCAAGCCANAC]
[+] EMBL AL929719 [GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGCACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCCCCGGGCGGAAACCCANCCCAAGCCANAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5284#1 ------------------------------------------------------------
consensus_5284#2 ------------------------------------------------------------
consensus_5284#0 CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACA 60
consensus_5284#1 ------------------------------------------------------------
consensus_5284#2 ------------------------------------------------------------
consensus_5284#0 TTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTA 120
consensus_5284#1 ------------------------------------------------------------
consensus_5284#2 ------------------------------------------------------------
consensus_5284#0 TCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAG 180
consensus_5284#1 ----------------------------------------------------CCGCGCG- 7
consensus_5284#2 -------------------------------GGCCAAGAATCGNCCCGAGGTNTCANCG- 28
consensus_5284#0 CGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGG 240
*
consensus_5284#1 -TGCTCTCTCCG-GTGTGCA-GTGC-TT-TTCGGTTCGCTTCCTTTTGGTGGAAAATTCT 62
consensus_5284#2 -TGCTCTCTCCGCGTGTGCACGTGCGTT-TTCGGTTCGCTTCCTTTTGGTGGAAAATTCT 86
consensus_5284#0 ACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACA-TAGAAAATACT 299
* * ** ** ***** * ** ** * **** * * ****** **
consensus_5284#1 AAA--------------CATTGCCTGTTTC-----------------------CCCCGGA 85
consensus_5284#2 AAA--------------CATTGCCTGTTTC-----------------------CCCCGGA 109
consensus_5284#0 GAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGA 359
** * *** ***** * **
consensus_5284#1 GTGGTTGGCTTACGGTGCTGTGGTTTCCC-GGTCGCTGTCTGGCGAACAGCTGTTTGTGT 144
consensus_5284#2 GTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGT 169
consensus_5284#0 GTGATTGGCTTAAAGTGCTGTGGTTTCCC-GGTCGCTCTCTGGCGAACAGCTGTTTGTGT 418
*** ******** *************** ******* **********************
consensus_5284#1 ACAAAGTGTTGACC-GCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAA-AGCGA- 201
consensus_5284#2 ACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGAC 229
consensus_5284#0 ACAAAGTGTTGAGC-CCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAA-AGCGA- 475
************ * * *** *** *********** *** ********** *****
consensus_5284#1 AGAATAAAAAGCACGTGGTC-TATCGGGCGGTGAGTGTGTGTGTGCCCTTTTT---CCAT 257
consensus_5284#2 AGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCAT 289
consensus_5284#0 AGAATAAAAAGCACGTGGTC-TATCGGTCGGTG--TGTGTGTGTGCCCTTTTT---TCAT 529
****** ************* ****** ***** ********** ****** ***
consensus_5284#1 CGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTT--TGATTGATATCC 315
consensus_5284#2 CGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCC 349
consensus_5284#0 CGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTT--TGATTGATATCC 587
******************************** ************* ***********
consensus_5284#1 -ATTTCGCTCTCCCA-CCCACCGGTTTTTT--TCCGGCGCACTCGAAGGAA--GAAAACG 369
consensus_5284#2 CATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACG 409
consensus_5284#0 -ATTTCGCTCTCCCA-CCCACCGGGTTTTTT-TCCGGCGCACTCGAAGGAA--GAAAACG 642
************** **** *** * ** **************** ******
consensus_5284#1 TCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACG 429
consensus_5284#2 TCAAACC---CGGCACGTG---------CAACCCAGAAGGGNACAGTTTACGTGGCAACA 457
consensus_5284#0 TCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACG 702
**** ** ** *** * * ** ** * * ** *** ***
consensus_5284#1 GGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCA 489
consensus_5284#2 CACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAA--ANCCGGGGGCAACG----GACG 511
consensus_5284#0 GGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA------------------------ 738
* ** * * * * * * ** *
consensus_5284#1 ACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGC 549
consensus_5284#2 AAGGTAACACCGGTTAGGAGATCC--TGGCCCCGGGCGGAAACCCANCC-CAAGCCANAC 568
consensus_5284#0 ------------------------------------------------------------
consensus_5284#1 GGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGT 609
consensus_5284#2 ------------------------------------------------------------
consensus_5284#0 ------------------------------------------------------------
consensus_5284#1 GGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTA 669
consensus_5284#2 ------------------------------------------------------------
consensus_5284#0 ------------------------------------------------------------
consensus_5284#1 CTCGCC 675
consensus_5284#2 ------
consensus_5284#0 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||