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Anopheles gambiae
cluster # 5286 cluster # 5286       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5286#0 length = 749 sequences # 1  
consensus_5286#1 length = 680 sequences # 1  
consensus_5286#2 length = 671 sequences # 2  

consensusID : consensus_5286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence
                              [AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCATCGTCCCCGGCTGTAAGGGTG]

[+] EMBL AL929841             [AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCATCGTCCCCGGCTGTAAGGGTG]


>consensus_5286#0 AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAA ACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGG TCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTG CCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGC GTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAG GCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCAT ATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCG AATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTA CGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNT NTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCAC CGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAA GAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATA TCGCATCATCGTCCCCGGCTGTAAGGGTG



consensusID : consensus_5286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence
                              [CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTACCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAAACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTACAGATCAGCCTCC]

[+] EMBL BM608768             [CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTACCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAAACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTACAGATCAGCCTCC]


>consensus_5286#1 CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT GACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCA AAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCG TGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTT ATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTA CCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGA TCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCC ATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTG TACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCA TCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAA ACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCA AGCGTTACAGATCAGCCTCC



consensusID : consensus_5286#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence
                              [CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACGGAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTGCAGATCAGCC]

[+] EMBL BM591060             [CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACGGAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTGCAGATCAGCC]
[+] EMBL BX602739             [                                                                                                                  AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGAGACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCGCGGGC                                                                                     ]


>consensus_5286#2 CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTG ATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAA GAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTT CGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGA CAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTG CAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTA TATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGT GGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCC CTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTT TAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACG GAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTT GCAGATCAGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5286#1      CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT 60
consensus_5286#2      CCGCGGA-----CGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT 55
consensus_5286#0      --------------------------------------------------AGAATCCCCC 10
                                                                             *    

consensus_5286#1      GACTGATAAATCTGCCATCTTCATCACC-AAATACATTCTGCTCCCTTGAAACGCCGCGC 119
consensus_5286#2      GACTGATAAATCTGCCATCTTCATCACC-AAATACATTCTGCTCCCTTGAAACGCCGCGC 114
consensus_5286#0      GAG-GTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGC 69
                      **  * * ******************** *******************************

consensus_5286#1      AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGT-CGGTCGGCTGCT 178
consensus_5286#2      AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGT-CGGTCGGCTGCT 173
consensus_5286#0      AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCT 129
                      *********************************************** ************

consensus_5286#1      CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACAT-CCCCGTGCCGTGCTTG 237
consensus_5286#2      CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACAT-CCCCGTGCCGTGCCTG 232
consensus_5286#0      CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTG 189
                      ******************************************* ************* **

consensus_5286#1      CT-TATCGACAAAAACCAACAA-GTCAGCTGGGAGTTT-CCTTCGCT-CGCGTGCTAATT 293
consensus_5286#2      CT-TATCGACAAAAACCAACAA-GTCAGCTGGGAGTTT-CCTTCGCT-CGCGTGCTAATT 288
consensus_5286#0      CTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATT 249
                      ** ******************* *************** ******** ************

consensus_5286#1      GCGATTACCGTGC---AAGCAAG-ATCG---AAGGTGAAGAAGCT-TGT-GGCTGCGGAA 344
consensus_5286#2      GCGATTGCCGTGC---AAGCAAG-ATCG---AAGGTGAAGAAGCT-TGT-GGCTGCGGAA 339
consensus_5286#0      GCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCA 309
                      ****** ******   * ***** ****   * ************ *** ******** *

consensus_5286#1      --ATCGCTT--CGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCAT-TTGCCC-- 397
consensus_5286#2      --ATCGCTT--CGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCAT-TTGCCC-- 392
consensus_5286#0      CAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCA 369
                        ******   *********************** *  ***** ******* **** *  

consensus_5286#1      AGCGCCTTACAGGACACGGTTCCAT-CGTGGTGAGACACGGTGGGAAA--AGAATTGCCT 454
consensus_5286#2      AGCGCCTTACAGGACACGGATCCAT-CGTGGTGAGACACGGTGGGAAA--AGAATTGCCT 449
consensus_5286#0      GACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCT 429
                        ***************** ***** **********************    * *** **

consensus_5286#1      TTGT----AATCCCGTGCT-GGCTATACGTGTACCCCT--CCCCCACCGTACGG-ATCTG 506
consensus_5286#2      TTGT----AATCCCGTGCT-GGCTATACGTGTACCCCT--CCCCCACCGTACGG-ATCTG 501
consensus_5286#0      TTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTG 489
                      ** *    *********** ******************  ****** ******* *****

consensus_5286#1      GATGCGCCTTT------------------CTGTTTTCGATTATTGCGTTGCATCTTTTA- 547
consensus_5286#2      GATGCGCCTTT------------------CTGTTTTCGATTATTGCGTTGCATCTTTTA- 542
consensus_5286#0      GATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGC 549
                      **********                   ** * * ** **    *  *   ** *    

consensus_5286#1      ----GGTCGTTTGTTCGGAA-CAAGTT----TTGACTGCTCCC-ATCC----ACGGGCCG 593
consensus_5286#2      ----GGTCGTTTGTTCGGAA-CAAGTT----TTGACTGCTGCC-ATCC----GCGGGCCG 588
consensus_5286#0      GTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCG 609
                          ** *     * ***** ** ***    ******* * ** ****      ** ***

consensus_5286#1      --GGTC--GAAACACGCAAGCGAATCC----GTCGCTTT--TTGCGAAAAAAAGTGTTTT 643
consensus_5286#2      --GGTC--GAAACACGGAAGCGAATCC----GTCGCTTT--TTGCGAAAAGA-GTGTTTT 637
consensus_5286#0      CGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTC 669
                         ***   ******* *******       ****** *  *********   **** * 

consensus_5286#1      GT-GT-GCCGC-TTCTGCCAA-GCGTTAC-AGATCAGCCTCC------------------ 680
consensus_5286#2      GT-GT-GCCGC-TTCTGCCAA-GCGTTGC-AGATCAGCC--------------------- 671
consensus_5286#0      GTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCAT 729
                      ** ** ***** ********* ***** * ********                      

consensus_5286#1      --------------------
consensus_5286#2      --------------------
consensus_5286#0      CGTCCCCGGCTGTAAGGGTG 749
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)