These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCATCGTCCCCGGCTGTAAGGGTG] [+] EMBL AL929841 [AGAATCCCCCGAGGTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTGCTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATTGCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCACAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCAGACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCTTTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTGGATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGCGTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCGCGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTCGTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCATCGTCCCCGGCTGTAAGGGTG] consensusID : consensus_5286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTACCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAAACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTACAGATCAGCCTCC] [+] EMBL BM608768 [CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCTTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTACCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCACGGGCCGGGTCGAAACACGCAAGCGAATCCGTCGCTTTTTGCGAAAAAAAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTACAGATCAGCCTCC] consensusID : consensus_5286#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence [CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACGGAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTGCAGATCAGCC] [+] EMBL BM591060 [CCGCGGACGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTTGACTGATAAATCTGCCATCTTCATCACCAAATACATTCTGCTCCCTTGAAACGCCGCGCAAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGATCCATCGTGGTGAGACACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTGCCATCCGCGGGCCGGGTCGAAACACGGAAGCGAATCCGTCGCTTTTTGCGAAAAGAGTGTTTTGTGTGCCGCTTCTGCCAAGCGTTGCAGATCAGCC] [+] EMBL BX602739 [ AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTCGGTCGGCTGCTCGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATCCCCGTGCCGTGCCTGCTTATCGACAAAAACCAACAAGTCAGCTGGGAGTTTCCTTCGCTCGCGTGCTAATTGCGATTGCCGTGCAAGCAAGATCGAAGGTGAAGAAGCTTGTGGCTGCGGAAATCGCTTCGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCATTTGCCCAGCGCCTTACAGGACACGGTTCCATCGTGGTGAGAGACGGTGGGAAAAGAATTGCCTTTGTAATCCCGTGCTGGCTATACGTGTACCCCTCCCCCACCGTACGGATCTGGATGCGCCTTTCTGTTTTCGATTATTGCGTTGCATCTTTTAGGTCGTTTGTTCGGAACAAGTTTTGACTGCTCCCATCCGCGGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5286#1 CCGCGTAAATTCTGTTCCAACACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT 60 consensus_5286#2 CCGCGGA-----CGCGTGGGCACAAACCTCTGTCGTACGTCGCGGATTTGTTCGCCTTTT 55 consensus_5286#0 --------------------------------------------------AGAATCCCCC 10 * consensus_5286#1 GACTGATAAATCTGCCATCTTCATCACC-AAATACATTCTGCTCCCTTGAAACGCCGCGC 119 consensus_5286#2 GACTGATAAATCTGCCATCTTCATCACC-AAATACATTCTGCTCCCTTGAAACGCCGCGC 114 consensus_5286#0 GAG-GTTTAATCTGCCATCTTCATCACCCAAATACATTCTGCTCCCTTGAAACGCCGCGC 69 ** * * ******************** ******************************* consensus_5286#1 AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGT-CGGTCGGCTGCT 178 consensus_5286#2 AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGT-CGGTCGGCTGCT 173 consensus_5286#0 AAAAAAGAGTACAACACGCGCGCAGAAGCATCATCGTCGTCGGTCGTACGGTCGGCTGCT 129 *********************************************** ************ consensus_5286#1 CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACAT-CCCCGTGCCGTGCTTG 237 consensus_5286#2 CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACAT-CCCCGTGCCGTGCCTG 232 consensus_5286#0 CGTGTTTCGAATTGTGAGTGAAGTACCAGGCGCTGTACAACATACCCCGTGCCGTGCTTG 189 ******************************************* ************* ** consensus_5286#1 CT-TATCGACAAAAACCAACAA-GTCAGCTGGGAGTTT-CCTTCGCT-CGCGTGCTAATT 293 consensus_5286#2 CT-TATCGACAAAAACCAACAA-GTCAGCTGGGAGTTT-CCTTCGCT-CGCGTGCTAATT 288 consensus_5286#0 CTATATCGACAAAAACCAACAAAGTCAGCTGGGAGTTTTCCTTCGCTACGCGTGCTAATT 249 ** ******************* *************** ******** ************ consensus_5286#1 GCGATTACCGTGC---AAGCAAG-ATCG---AAGGTGAAGAAGCT-TGT-GGCTGCGGAA 344 consensus_5286#2 GCGATTGCCGTGC---AAGCAAG-ATCG---AAGGTGAAGAAGCT-TGT-GGCTGCGGAA 339 consensus_5286#0 GCGATTACCGTGCCAAAGGCAAGGATCGGACANGGTGAAGAAGCTATGTAGGCTGCGGCA 309 ****** ****** * ***** **** * ************ *** ******** * consensus_5286#1 --ATCGCTT--CGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCAT-TTGCCC-- 397 consensus_5286#2 --ATCGCTT--CGTACCTGATCGTATATCAATCTCCACCTCCACCTCGCAT-TTGCCC-- 392 consensus_5286#0 CAATCGCTNTACGTACCTGATCGTATATCAATCTACCACTCCAACTCGCATATTGCNCCA 369 ****** *********************** * ***** ******* **** * consensus_5286#1 AGCGCCTTACAGGACACGGTTCCAT-CGTGGTGAGACACGGTGGGAAA--AGAATTGCCT 454 consensus_5286#2 AGCGCCTTACAGGACACGGATCCAT-CGTGGTGAGACACGGTGGGAAA--AGAATTGCCT 449 consensus_5286#0 GACGCCTTACAGGACACGGTTCCATACGTGGTGAGACACGGTGGGAAACCGAATTTGNCT 429 ***************** ***** ********************** * *** ** consensus_5286#1 TTGT----AATCCCGTGCT-GGCTATACGTGTACCCCT--CCCCCACCGTACGG-ATCTG 506 consensus_5286#2 TTGT----AATCCCGTGCT-GGCTATACGTGTACCCCT--CCCCCACCGTACGG-ATCTG 501 consensus_5286#0 TTTTGTTAAATCCCGTGCTCGGCTATACGTGTACCCCTACCCCCCAACGTACGGGATCTG 489 ** * *********** ****************** ****** ******* ***** consensus_5286#1 GATGCGCCTTT------------------CTGTTTTCGATTATTGCGTTGCATCTTTTA- 547 consensus_5286#2 GATGCGCCTTT------------------CTGTTTTCGATTATTGCGTTGCATCTTTTA- 542 consensus_5286#0 GATGCGCCTTCTACTGTATATCACAGATACTCTNTGCGCTTGCCACTCTNTNTCCTCCGC 549 ********** ** * * ** ** * * ** * consensus_5286#1 ----GGTCGTTTGTTCGGAA-CAAGTT----TTGACTGCTCCC-ATCC----ACGGGCCG 593 consensus_5286#2 ----GGTCGTTTGTTCGGAA-CAAGTT----TTGACTGCTGCC-ATCC----GCGGGCCG 588 consensus_5286#0 GTACGGNCNNGCTTCCGGAAACANGTTCANATTGACTGNTCCCCATCCCACCGGGGACCG 609 ** * * ***** ** *** ******* * ** **** ** *** consensus_5286#1 --GGTC--GAAACACGCAAGCGAATCC----GTCGCTTT--TTGCGAAAAAAAGTGTTTT 643 consensus_5286#2 --GGTC--GAAACACGGAAGCGAATCC----GTCGCTTT--TTGCGAAAAGA-GTGTTTT 637 consensus_5286#0 CGAGTCCGAAAACACGGAAGCGAAATNCCCGGTCGCTATCATTGCGAAAAAGAGTGTNTC 669 *** ******* ******* ****** * ********* **** * consensus_5286#1 GT-GT-GCCGC-TTCTGCCAA-GCGTTAC-AGATCAGCCTCC------------------ 680 consensus_5286#2 GT-GT-GCCGC-TTCTGCCAA-GCGTTGC-AGATCAGCC--------------------- 671 consensus_5286#0 GTCGTAGCCGCCTTCTGCCAACGCGTTACCAGATCAGCTCCCCCCGACATATCGCATCAT 729 ** ** ***** ********* ***** * ******** consensus_5286#1 -------------------- consensus_5286#2 -------------------- consensus_5286#0 CGTCCCCGGCTGTAAGGGTG 749 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||