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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1367 fasta sequence
[CGACCCACGCGTCCGCAAAATACCATTTCTATTAGCATTATCCTAGCGGCTTCTATTTCCTTTGCCCATTACTCGTTCAATACATGTGTATTACGGTTCATTTAGCCAAAACAGGCAAAAAACAAACACACACTCTGTATAAACAATTAAACGAAAACAAGCAAAATAATTTTAAAATAACACACGCACACATACACAGTCTCGGTAGCGGTTGTTTATTTTACGTCTCCATAGTAAGTGCCTTATTCGTACGAAAAAAAAACAAAATTGTAAAAAATAAAAATAGCGCATAAGCATGAACCAACACTTGGGCAAAACACGAGAAAAAAGAGATGGAAAATGGAAAATGAAAAGAATTGATGAATGAAAAGGAATGAAACAAAAAAAGTCCAAACAAACTGAAATCAATTTTGAAAGCATTAAAAAAAAAGAAATTAAAACAAACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAATGTAAAACCTAATACTCTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGCATGATTACCGAAATGCTCGAAACCTTTTCTCTCCGTCTCTCTCTTTCTCCCTATTGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTATTCACTATTTTCTAACCACTCTCTCTCTCTCGCGCTCTATCCTTCTATGTAGCTTTTGAAAAATTACGTTAACCTTCTGTACATATATTGTAGCGTTAGGAGATTAAGTTAGTTACTATCATCGAAGGTATCTTGCTAATTAAAAGCTCGACAAAGTTAGCTCGCTAGGACAGAGATCCCGTTACATTCTGCAAATGTTGCTGGTTCATTTCATCACTCCCATAGACAGATACATACACTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAGCCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAATGGTTTTTTGTTTCGTTTGTTTTAAAGCGTTCGGGTAGCTTGCAGATTTTGGCAGATCTTTGCGTTACAGTACGAACCAATCACAACAGAACTAATATCCAGTACCAGAAGCGAAACGAACAAAGTAAGGACGAGGTGTAGTAGGGAAACTAATTGTGTACAGGTCTAAAAATAGAAACAAAAAAACGAAGGAAATAATAGGAGGGAGGCTGACACGGAGAAATCATCGGGAGTAATAAATGTATTTCCATAGAAGTGTTCCTTTTTTAAAAAAAAAAAAAAAAAAAACAGGCATGTGTNACCTCGGGGGA]
[+] EMBL BM654506 [CGACCCACGCGTCCGCAAAATACCATTTCTATTAGCATTATCCTAGCGGCTTCTATTTCCTTTGCCCATTACTCGTTCAATACATGTGTATTACGGTTCATTTAGCCAAAACAGGCAAAAAACAAACACACACTCTGTATAAACAATTAAACGAAAACAAGCAAAATAATTTTAAAATAACACACGCACACATACACAGTCTCGGTAGCGGTTGTTTATTTTACGTCTCCATAGTAAGTGCCTTATTCGTACGAAAAAAAAACAAAATTGTAAAAAATAAAAATAGCGCATAAGCATGAACCAACACTTGGGCAAAACACGAGAAAAAAGAGATGGAAAATGGAAAATGAAAAGAATTGATGAATGAAAAGGAATGAAACAAAAAAAGTCCAAACAAACTGAAATCAATTTTGAAAGCATTAAAAAAAAAGAAATTAAAACAAACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAATGTAAAACCTAATACTCTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGCATGATTACCGAAATGCTCGAAACCTTTTCTCTCCGTCTCTCTCTTTCTCCCTATTGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTATTCACTATTTTCTAACCACTCTCTCT ]
[+] EMBL BX628736 [ TGATCAAGAGAGGATGGACGAATGTAAAACCTAATACTCTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGCATGATTACCGAAATGCTCGAAACCTTTTCTCTCCGTCTCTCTCTTTCTCCCTATTGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTATTCACTATTTTCTAACCACTTTCTCTCTCTCGCGCTCTATCCTTCTATGTAGCTTTTGAAAAATTACGTTAACCTTCTGTACATATATTGTAGCGTTAGGAGATTAAGTTAGTTACTATCATCGAAGGTATCTTGCTAATTAAAAGCTCGACAAAGTTAGCTCGCTAGGACAGAGATCCCGTTACATTCTGCAAATGTTGCTGGTTCATTTCATCACTCCCATAGACAGATACATACACTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAGCCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAAT ]
[-] EMBL AL933242 [ AGGACAGAGATCCCGTTACATTCTGCAAATGTTGCTGGTTCATTTCATCACTCCCATAGACAGATACATACACTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAGCCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAATGGTTTTTTGTTTCGTTTGTTTTAAAGCGTTCGGGTAGCTTGCAGATTTTGGCAGATCTTTGCGTTACAGTACGAACCAATCACAACAGAACTAATATCCAGTACCAGAAGCGAAACGAACAAAGTAAGGACGAGGTGTAGTAGGGAAACTAATTGTGTACAGGTCTAAAAATAGAAACAAAAAAACGAAGGAAATAATAGGAGGGAGGCTGACACGGAGAAATCATCGGGAGTAATAAATGTATTTCCATAGAAGTGTTCCTTTTTTAAAAAAAAAAAAAAAAAAAACAGGCATGTGTNACCTCGGGGGA]
consensusID : consensus_5288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1237 fasta sequence
[ATTAAACCCAAAAGAATGTTAAAATACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAAAGTAAAACCTAATACTCTCCCTCAAAACAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGTATGATTAACTGAAATTGCTACGAAAACCTATATTACTACTACCCCTACTACTACATACTACTAATATAGCATNTGAATAAACAAACTAAACGGATTATATCTAAATACCAACTTATATTAACAGGAAGACCATATTNAGTATACAGTAACCTTGGTATATAATATACACACTATATANATATACTAACAACCCAACATACTACTACTACTACAGACTGACNTCCTAATACAGCNTATCCCTNAATNGTCACGGCCTATTTCTCGAAAAAAAAAAGTACAACCGGTTTACAGCCTTATACCTTGGTAAACAAGTCAGTAATATATGGTCACGGCCGCTATCANGTGGGGAAATTNTAAAAGGTATACGACATCNTCANCCTTAATTCCCACTACCGCAACAGCGTACAATNCGTATTGGCTCAACATNTNAACANAANCGCCTCCTGGAACCAAAGAACGGTNTCCACGGCCTTCCGGACTACAAGGAGGAACCACAGGAAGGAAATTACCCCCCGATTATACCTTAAATANGCACTTTAGGACACAAAACTATTCCCTNAGGGCNTNGGGATTCATACCACTGNCTACTCCCAACTACCAATGCTCTCCTCCCCCCAGTTAACGCCACATCCAGCGACTTAACCACACTTNAACAANCANTTGGGTGACACAAAGCGGGAGCACACGGGCCACCGCACANAATTGGCGGAACGNCGGGTACACGACGCAATTTAAACACTATAAATACGCGCGCCACACACATAAACTCAACTCACCCNAGCTNNTGGGTNNCAGCAACTTACGCGACCNGAACACAGACGGCCGGTTGACAGGGGGNAAAACAGCCNGGGGGGTAAAACGCCTTAGGNNAACGNGGAGACTTCCCCTCGACCGNCTCAAAGCGAANGCNTCAGGCNGAAANACACNGGGNNTANANCACAAACGAGGCACAGAGTAGNNCCGAGATGCCANACCAGACNAGACAGACTCACCGGGNAGNCAAACACCTCCTGGCCGACACGCCTTNNACCCAGGGGCGACACNCAACTNCTCTCACAAGGCACTCGCAG]
[+] EMBL AL929850 [ATTAAACCCAAAAGAATGTTAAAATACAAAAAACACACGAAGCGTATAAAAAAACTACAACATGGAAGAGTGATCAAGAGAGGATGGACGAAAGTAAAACCTAATACTCTCCCTCAAAACAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCAGTATGATTAACTGAAATTGCTACGAAAACCTATATTACTACTACCCCTACTACTACATACTACTAATATAGCATNTGAATAAACAAACTAAACGGATTATATCTAAATACCAACTTATATTAACAGGAAGACCATATTNAGTATACAGTAACCTTGGTATATAATATACACACTATATANATATACTAACAACCCAACATACTACTACTACTACAGACTGACNTCCTAATACAGCNTATCCCTNAATNGTCACGGCCTATTTCTCGAAAAAAAAAAGTACAACCGGTTTACAGCCTTATACCTTGGTAAACAAGTCAGTAATATATGGTCACGGCCGCTATCANGTGGGGAAATTNTAAAAGGTATACGACATCNTCANCCTTAATTCCCACTACCGCAACAGCGTACAATNCGTATTGGCTCAACATNTNAACANAANCGCCTCCTGGAACCAAAGAACGGTNTCCACGGCCTTCCGGACTACAAGGAGGAACCACAGGAAGGAAATTACCCCCCGATTATACCTTAAATANGCACTTTAGGACACAAAACTATTCCCTNAGGGCNTNGGGATTCATACCACTGNCTACTCCCAACTACCAATGCTCTCCTCCCCCCAGTTAACGCCACATCCAGCGACTTAACCACACTTNAACAANCANTTGGGTGACACAAAGCGGGAGCACACGGGCCACCGCACANAATTGGCGGAACGNCGGGTACACGACGCAATTTAAACACTATAAATACGCGCGCCACACACATAAACTCAACTCACCCNAGCTNNTGGGTNNCAGCAACTTACGCGACCNGAACACAGACGGCCGGTTGACAGGGGGNAAAACAGCCNGGGGGGTAAAACGCCTTAGGNNAACGNGGAGACTTCCCCTCGACCGNCTCAAAGCGAANGCNTCAGGCNGAAANACACNGGGNNTANANCACAAACGAGGCACAGAGTAGNNCCGAGATGCCANACCAGACNAGACAGACTCACCGGGNAGNCAAACACCTCCTGGCCGACACGCCTTNNACCCAGGGGCGACACNCAACTNCTCTCACAAGGCACTCGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5288#0 ---CGACCCACGCGTCCGC-AAAATACCATTTCTATTAGCATTATCCTAGCGGCTTCTAT 56
consensus_5288#1 ATTAAACCCAAAAGAATGTTAAAATACAAAAAACACACGAAGCGTATAAAAAAACTACAA 60
***** * * ******* * * * * * * * *
consensus_5288#0 TTCCTT----TGCCCATTACTCGTTCAATACATGTGTATTACGGTTCATTTAGCCAAAAC 112
consensus_5288#1 CATGGAAGAGTGATCAAGAGAGGATGGACGAAAGTAAAACCTAATACTCTCCCTCAAAAC 120
** ** * * * * * ** * * * * ******
consensus_5288#0 AGGCAAAAAACA---AACACACACTCTGTATAAACAATTAAACGAAA-ACAAGCAAAATA 168
consensus_5288#1 AAATTCAAACTGTTTAACACAAACA-TACACTTACAATATGATGCAGTATGATTAACTGA 179
* *** ****** ** * * ***** * * * * * ** *
consensus_5288#0 ATTTTAAAATAACACACGCACACATACACAGTCTCGGTAGCGGTTGTTTATTTTACGTCT 228
consensus_5288#1 AATTGCTACGAAAACCTATATTACTAC-TACCCCTACTACTACATACTACTAATATAGCA 238
* ** * ** ** * *** * * ** * * * ** *
consensus_5288#0 CCATAGTAAGTGCCTTATTCGTACGAAAA--AAAAACAAAATTGTAAAAAATAAAAATAG 286
consensus_5288#1 TNTGAATAAACAAACTAAACGGATTATATCTAAATACCAACTTATATTAA-CAGGAAGAC 297
* *** ** ** * * * *** ** ** ** ** ** * ** *
consensus_5288#0 CGCAT-AAGCATGAACCAACACTTGGGCAAAACACGAGAAAAAAGAGATGGAAAATGGAA 345
consensus_5288#1 CATATTNAGTATACAGTAACCTTGGTATATAATAT-ACACACTATATANATATACTAACA 356
* ** ** ** * *** * * * ** * * * * * * * * * * *
consensus_5288#0 AATGAAAAGAATTGATGAATGAAAAGGAATGAAACAAAAAAAGTCCAAACAAACTGAAAT 405
consensus_5288#1 ACCCAACATACT--ACTACTACTACAGACTGACNTCCTAATA--CAGCNTATCCCTNAAT 412
* ** * * * * * * * ** *** ** * * * * ***
consensus_5288#0 CAATTTTGAAAGCATTAAAAAAAAAGAAATTAAAACAAACAAAAAACACACGAAGCGTAT 465
consensus_5288#1 NGTCACGGCCTATTTCTCGAAAAAAAAAAGTACAACCGGTTTACAGCCTTATACCTTGGT 472
* * ****** *** ** *** * * * * *
consensus_5288#0 AAAAAAACTA-CAACATGGAAGAGTGATCAAGAGAGGATGGACGAATGTAAAACCTAATA 524
consensus_5288#1 AAACAAGTCAGTAATATATGGTCACGGCCGCTATCANGTGGGGAAATTNTAAAAGGTATA 532
*** ** * ** ** * * * *** *** *** ***
consensus_5288#0 CT-CTCCATCAAATCAAATTCAAACTGTTTAACACAAACATACACTTACAATATGATGCA 583
consensus_5288#1 CGACATCNTCANCCTTAATTCCCACTACC--GCAACAGCGTACAATNCGTAT-TGGCTCA 589
* * * *** ***** *** ** * * **** * ** ** **
consensus_5288#0 GCATGATTACCGAAATGCTC---GAAACCTTTTCTCTCCGTCT-CTCTCTTTCTCCCTAT 639
consensus_5288#1 ACATNTNAACANAANCGCCTCCTGGAACCAAAGAACGGTNTCCACGGCCTTCCGGACTAC 649
*** ** ** ** * **** * ** * *** * ***
consensus_5288#0 TGCATGATACACTAGCGGATATTTTAATCACTATACGAGCATTAGTTACGTACTGTTTAT 699
consensus_5288#1 AAGGAGGAACCACAGGAAGGAAATTACCCCCCGATTATACCTTAAATANGCACT-TTAGG 708
* ** ** * *** * * * *** ** * *** **
consensus_5288#0 TCACTATTTTCTAACCACTCTCTCTC--TCTCGCGCTCTATCCTTCTATGTAGCTTTTGA 757
consensus_5288#1 ACACAA------AACTATTCCCTNAGGGCNTNGGGATTCATACCACTGNCTA-CTCCCAA 761
*** * *** * ** ** * * * * ** * ** ** ** *
consensus_5288#0 AAAATTACGTTAACCTTCTGTACATATATTGTAGCGTTAGGAGATTAAGTTAGTTACTAT 817
consensus_5288#1 CTACCAATGCTCTCCTCCCCC-CAGTTAACGCCACATCCAGCGACTTAACCA--CACTTN 818
* * * * *** * ** ** * * * * ** * * * ***
consensus_5288#0 CATCGAAGGTATCTTGCTAATTAAAAGCTCGACAAAGTTAGCTCGCTAGGACAGAGATCC 877
consensus_5288#1 AAC---AANCANTTGGGTGACACAAAGCGGGAGCACACGGGCCACC--GCACANAATTGG 873
* * * * * * * ***** ** * ** * * *** * *
consensus_5288#0 CGTTACATTCTGCAAATGTTGCTGGTTCATTTC-ATCACTCCCATAGACAGATACATACA 936
consensus_5288#1 CGGAACGNCGGGTACACGACGCAATTTAAACACTATAAATACGCGCGCCACACACATAAA 933
** ** * * * * ** ** * * ** * * * * ** * ***** *
consensus_5288#0 CTGTAACGACAGCAGAATGGAGCGTAGCACACTATCGTTTATACTATTCATTGTACATAG 996
consensus_5288#1 CT-CAACTCACCCNAGCTNNTGGGTNNCA----GCAACTTACGCGACC---NGAACACAG 985
** *** * * * ** ** *** * * * *** **
consensus_5288#0 CCGACAGAGCGTTAGGGCAATTTGTGTTTTCTGTAGGGATCCTAATTTAGCTGTTGGTAA 1056
consensus_5288#1 ACGGCCGGTTGACAGGGGGNAAAACAGCCNG-GGGGGTAAAACGCCTTAG--GNNAACGN 1042
** * * * **** * ** * **** *
consensus_5288#0 TGGTTTTTTGTTTCGTTTGTTTTAAAGCGTTCGGGTAGCTTGCAGATTTTGGCAGATCTT 1116
consensus_5288#1 GGAGACTTCCCCTCGACCGNCTCAAAGCGAANGCNT------CAGGCN--GAAANACACN 1094
* ** *** * * ****** * * *** * * *
consensus_5288#0 TGCGTTACAGTACGAACCAATCACAA--CAGAACTAATATCCAGTACCAGAAGCGAAACG 1174
consensus_5288#1 GGGNNTANANCACAAACGAGGCACAGAGTAGNNCCGAGATGCCANACCAGACNAGACAGA 1154
* ** * ** *** * **** ** * * ** * ****** ** *
consensus_5288#0 AACAAAGTAAGGACGAGGTGTAGTAGGGAAACTAATTGTGTACAGGTCTAAAAATAGAAA 1234
consensus_5288#1 CTCACCGGGNAGNCAAACACCTCCTGGCCGACACGCCTTNNAC---CCAGGGGCGACACN 1211
** * * * * ** ** * ** * * *
consensus_5288#0 CAAAAAAACGAAGGAAATAATAGGAGGGAGGCTGACACGGAGAAATCATCGGGAGTAATA 1294
consensus_5288#1 CAACTNCTCTCACAAGGCACTCGCAG---------------------------------- 1237
*** * * * * * * **
consensus_5288#0 AATGTATTTCCATAGAAGTGTTCCTTTTTTAAAAAAAAAAAAAAAAAAAACAGGCATGTG 1354
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 TNACCTCGGGGGA 1367
consensus_5288#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||