These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 725 fasta sequence [GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCG-ACCGGGCAGGTAT--GGTGTGT-TAGGTTTACC-AT-GTCCACCATCG-AGGAGCGTACAGC-GTACCTA-GACAATCC-GTACTTCAAA-GGGCACATCTACGGGAACTTTAACCC-GTTCTAC-GTGACCA-TCGCC-GTCT-GTACC-GT-GCTC-GGCGTGTT-CAT-CTTC-GTGCTGAACA-TCGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACCGCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGGCCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTACCCGGCAGTGG] [+] EMBL BX466349 [GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCGAACCGGGCAGGTATGAGGTGTGTATAGGTTTACCAATGGTCCACCATCGAAGGAGCGTACAGCGGTACCTAGGACAATCCGGTACTTCAAAGGGGCACATCTACGGGAACTTTAACCCGGTTCTACGGTGACCAGTCGCCGGTCTGGTACCGGTGGCTCGGGCGTGTTACATACTTCGGTGCTGAACACTCGTGTGCGGCTGCTGGTCGAAGg ] [+] EMBL BM636132 [ ccgGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCG ACCGGGCAGGTAT GGTGTGT TAGGTTTACC AT GTCCACCATCG AGGAGCGTACAGC GTACCTA GACAATCC GTACTTCAAA GGGCACATCTACGGGAACTTTAACCC GTTCTAC GTGACCA TCGCC GTCT GTACC GT GCTC GGCGTGTT CAT CTTC GTGCTGAACA TCGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACCGCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGGCCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGA ] [+] EMBL BM652253 [ ccgGTGTCTTTCTGGTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCCCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGCG ACCGGGCAGGTAT GGTGTGT TAGGTTTACC AT GTCCACCATCG AGGAGCGTACAGC GTACCTA GACAATCC GTACTTCAAA GGGCACATCTACGGGAACTTTAACCC GTTCTAC GTGACCA TCGCC GTCT GTACC GT GCTC GGCGTGTT CAT CTTC GTGCTGAACA TCGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCACACCGCACAAGCAGCCGCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGCGGCGGCCAAAGAAAACCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTACCCGGCAGTGG] consensusID : consensus_5305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [AAGAATNGCCCGAGGTTTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCTCCCCCCCCCAACCCCAATCGGATCCTGTGGACGGTTTTGCTGACCGGGCAGGTATGGTGTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGTACCTAGACAATCCGTACTTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACCTGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTATCGTTTGGTCGGCCACACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANGTGACA] [+] EMBL AL930148 [AAGAATNGCCCGAGGTTTGACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGCTCCCCCCCCCAACCCCAATCGGATCCTGTGGACGGTTTTGCTGACCGGGCAGGTATGGTGTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGTACCTAGACAATCCGTACTTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACCTGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGGCTGCTGCTCGAAGCACAAGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTATCGTTTGGTCGGCCACACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGACGCTAGCCACTTCCAGCCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAGTACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAGCAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANGTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5305#0 GATCGGCACGCAGGGCACNAAGTGAGCTGCGGTCGCAACGCTGTGGTGTGTCTTTCTGGT 60 consensus_5305#1 ------------------------------------------AAGAATNGCCCGAGGTTT 18 * * * * consensus_5305#0 GACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGC 120 consensus_5305#1 GACAGCTCGTGTTTGGGACGGTTTTCTTCGCGTTAGTTGAGATAAAAACGTGTGCTCAGC 78 ************************************************************ consensus_5305#0 CCCCCCCCCCCATCCCCAATCGGATCCTGTGGACGGTTTTGC-GACCGGGCAGGTATGGT 179 consensus_5305#1 TCCCCCCCCCAA-CCCCAATCGGATCCTGTGGACGGTTTTGCTGACCGGGCAGGTATGGT 137 ********* * ***************************** ***************** consensus_5305#0 GTGTTAGGTTTACCATGTCCACCATCGAGGAGC-GTACAGCGTACCTAGACAATCCGTAC 238 consensus_5305#1 GTGTTAGGTTTACCATGTCCACCATCGAGGAGCTGTACAGCGTACCTAGACAATCCGTAC 197 ********************************* ************************** consensus_5305#0 TTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACC 298 consensus_5305#1 TTCAAAGGGCACATCTACGGGAACTTTAACCCGTTCTACGTGACCATCGCCGTCTGTACC 257 ************************************************************ consensus_5305#0 -GTGCTCGGCGTGTTCATCTTCGTGCTGAACATC-GTGTGCGGCTGCTGCTCGAAGCACA 356 consensus_5305#1 TGTGCTCGGCGTGTTCATCTTCGTGCTGAACATCTGTGTGCGGCTGCTGCTCGAAGCACA 317 ********************************* ************************* consensus_5305#0 AGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTGTCGTTTTGGTCGGCCA 416 consensus_5305#1 AGCAGTACTGGCAGGACAGACATACGGGCAATCGTTGGTTAGTATCGTTT-GGTCGGCCA 376 ******************************************* ****** ********* consensus_5305#0 CACCGCACAAGCAGCC-GCCGCTCGACCTGACGGAGCTGAAGGACGCTAGCCACTTCCAG 475 consensus_5305#1 CACCGCACAAGCAGCCTGCCGCTCGATCTGACGGAGCTGAAGGACGCTAGCCACTTCCAG 436 **************** ********* ********************************* consensus_5305#0 CCGGTCAATCCCGACGTCGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAG 535 consensus_5305#1 CCGGTCAATCCCGACGTTGAACGGCCGGTAGAGTACACCGTGCAGCACCACCGTCCCCAG 496 ***************** ****************************************** consensus_5305#0 TACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAG 595 consensus_5305#1 TACCAGTATCCGCCCAGCCGTGGTGCTTCCCCGCAGGGCTACCATCACCATCACCAGCAG 556 ************************************************************ consensus_5305#0 CAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAAAGTGACATTTAAAAAGGC 655 consensus_5305#1 CAGCATCACCGCGAGGAGTACGTCGAGCTGCAGAAGCGCGAANGTGACA----------- 605 ****************************************** ****** consensus_5305#0 GGCGGCCAAAGAGACCCGCTGCTGCGTGAGCTAAACACGATGGCTTGGTTGGTTGCGTAC 715 consensus_5305#1 ------------------------------------------------------------ consensus_5305#0 CCGGCAGTGG 725 consensus_5305#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||