cluster # 5308

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Anopheles gambiae
cluster # 5308 cluster # 5308 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5308#0 length = 679 sequences # 2

consensus_5308#1 length = 593 sequences # 1
consensus_5308#2 length = 250 sequences # 1

consensusID : consensus_5308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence

                              [AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTG----AAG--AAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGG-------AAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT]

[+] EMBL BX468619             [AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTG    AAG  AAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGG       AAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT]
[+] EMBL BM589175             [                   ccgGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATACAAAGTGTGACCAGTATTTCGGTTGGTGGTGGACAAAGTGTGTGGACAAAGCATAGTGTCAGTGGAGGAAAGGAAAAATCGCTTTAGCAAATCTTCACCCTCTTTCTGGAAAAAAAAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGCGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAG CCGGAAGGGATTGCGGTGCGCGGTAACGC TACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGtt                                                                                                                                                                                                                    ]




>consensus_5308#0
AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTAC
GTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTG
TGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTC
TGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAG
CCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGC
CGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGC
TGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTA
CGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGT
GGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCT
GGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGG
CATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAG
GACAAAGGCCATCATCAGT

consensusID : consensus_5308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATTTGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCGGTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT]

[+] EMBL BX627793             [GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATTTGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCGGTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT]




>consensus_5308#1
GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGG
ATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATT
TGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACG
CTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT
TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT
AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG
GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG
TTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAG
CTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCG
GTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT

consensusID : consensus_5308#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACGACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC]

[+] EMBL AL930239             [GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACGACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC]




>consensus_5308#2
GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAA
ATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCG
CACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACG
ACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGAC
GCGAACGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5308#0      ------------------------------------------------------------
consensus_5308#1      GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGG 60
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      ------------------------------------------------------------
consensus_5308#1      ATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATT 120
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      --------------------AGATCGGCCGAGGC--TGNNGAACGTAACGGACGCGAACG 38
consensus_5308#1      TGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACG 180
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      CNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT 98
consensus_5308#1      CTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT 240
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT 158
consensus_5308#1      TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT 300
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG 218
consensus_5308#1      AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG 360
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG 278
consensus_5308#1      GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG 420
consensus_5308#2      ----------------------------------GCCGAGCGTCGACGGTGTCGATTCGG 26
                                                        ***   ** ***    *  * * * *

consensus_5308#0      TTCAGGCCGATCAGCATCGTGCC---GGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAAC 335
consensus_5308#1      TTCAGGCCGATCAGCATCGTGCC---GGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAAC 477
consensus_5308#2      TGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATT 86
                      *    * *  **         **   **    *   * ******   *  *     **  

consensus_5308#0      CAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAAT 395
consensus_5308#1      CAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAG-CCGGAAGGAAT 536
consensus_5308#2      TGATTATTTATC----CCACACA-CAGCAC-AACACAGCGCACAGCGGGATG-ATGTAAT 139
                          *  *** *    *   **  * **** *   * **   **** *   * * * ***

consensus_5308#0      TGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGG 455
consensus_5308#1      TGCGGTGCGCGGTAACGC-TACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT-- 593
consensus_5308#2      T--CGTTCGAAATAAACATCTCTTGGCGTACGGTCGC--GCGACGACATATTGGGG-TAA 194
                      *   ** **   ***      * *    ******     * * * * *** *** * *  

consensus_5308#0      GCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACT 515
consensus_5308#1      ------------------------------------------------------------
consensus_5308#2      GC-ATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC--- 250
                                                                                  

consensus_5308#0      CGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCA 575
consensus_5308#1      ------------------------------------------------------------
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      TCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGA 635
consensus_5308#1      ------------------------------------------------------------
consensus_5308#2      ------------------------------------------------------------
                                                                                  

consensus_5308#0      CAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT 679
consensus_5308#1      --------------------------------------------
consensus_5308#2      --------------------------------------------