These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1068 fasta sequence [AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGATGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGATGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTTGTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGATGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGAAAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAATCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGGCAAGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTCTAGGCTACGTTCCTAATACGGACGGCAGTTTAAAATCAGCCAAGGAAGCGGTAGTCGGATTGACCGAGACTGATGTGCAAAACATTCGCCAATTGTACAAAAAACGACGACAACGCGAAAGTAAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG] [+] EMBL BX625834 [AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGATGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGATGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTTGTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGATGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGAAAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAATCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATG ] [+] EMBL BM632847 [ ccgGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGATGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGAAAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAATCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGGCAAGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGA ] [+] EMBL BX628714 [ TGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTTCTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGCGAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAAAAGTGATGCCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAAAAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAACTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGG AAGGACTTCTTTTTCTT CCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTCTAGGCTACGTTCCTAATACGGACGGCAGTTTAAAATCAGCCAAGGAAGCGGTAGTCGGATTGACCGAGACTGATGTGCAAAACATTCGCCAATTGTACAAAAAACGACGACAACGCGAAAGTAAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG] consensusID : consensus_5311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CAAGAATCGCCCCGAGGTGTTGAAAGCAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTTACACACACGNTTCTCCTTGCACTGCCAANACATGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGGTCCCTGCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGCTNTTCCACTTGTTCTTGGAACTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTGAAAACGGTTGTACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTTCCCTGGCGTACTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGACTGACAAGCGCAGGAAAGGTCCTGGCAAATAAAAAAACAACCAAGGACAATGCAAAACAACANCACGGAAAAACGTTACAGAATCGGCCCCTGNAGACTTGGTGGTTTCGAACACAACACATGTGGACACGTGGGACAACATGGTGCACAAGANATGACAGAGAATACCTTCGGACACG] [+] EMBL AL930396 [CAAGAATCGCCCCGAGGTGTTGAAAGCAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGAATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGAACGGCGGGAGGAAGATTTTTACACACACGNTTCTCCTTGCACTGCCAANACATGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGGTCCCTGCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGCTNTTCCACTTGTTCTTGGAACTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTGAAAACGGTTGTACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTTCCCTGGCGTACTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGACTGACAAGCGCAGGAAAGGTCCTGGCAAATAAAAAAACAACCAAGGACAATGCAAAACAACANCACGGAAAAACGTTACAGAATCGGCCCCTGNAGACTTGGTGGTTTCGAACACAACACATGTGGACACGTGGGACAACATGGTGCACAAGANATGACAGAGAATACCTTCGGACACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5311#0 AAGTGCTCTTGCCGGTGCAACGGCAAACAACAAGAAAAAGATCACGTTTGACGATGAAGA 60 consensus_5311#1 ------------------------------------------------------------ consensus_5311#0 TGACGCACCGGGCCAGAAGAAATTGTCGCTGTTTGATGGGCCGGAAGATGAGGACGACGA 120 consensus_5311#1 ------------------------------------------------------------ consensus_5311#0 TGGATTCAAGGCTAATTTCTCCTTGCGCAAGCAGATGCTTGGAGAGGAGGGCCAAAAGTT 180 consensus_5311#1 ------------------------------------------------------------ consensus_5311#0 GTACGAAATGCAAACCACCTATCAGGCGGACAATCGTTTCCGTTTGGATGCGCGGTTTGA 240 consensus_5311#1 ------------------------------------------------------------ consensus_5311#0 TGACGATGCTGGTAAACCTGCCGAAGTGCAAACGCCACAATCGAAGGCAAAGGACAAGGA 300 consensus_5311#1 ------------------------------------------------------------ consensus_5311#0 AAGAAAAAAGCAACTGGAGATTCTTTCCAATGTGGTAGGCAAACCGATCATTGCGGAAAA 360 consensus_5311#1 --------------------------------------------CAAGAATCGCCCCGAG 16 * * ** ** * consensus_5311#0 TCGAGTTGAAAGCAAAAACAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGA 420 consensus_5311#1 --GTGTTGAAAGCAAAA-CAACGTGCAAATGCAACGGTTCGATCCTACGCAGCAAAAAGA 73 * ************* ****************************************** consensus_5311#0 ATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGA 480 consensus_5311#1 ATCAGACCAAAATGAAACACACGAACCAGCGGTGAAAGCATCCGACCGGAAAAAGGCAGA 133 ************************************************************ consensus_5311#0 ACGGCGGGAGGAAGATTTTAAAGTTTCTGAGCAAAAGTTTTACAATGTGTCGGATAGCTT 540 consensus_5311#1 ACGGCGGGAGGAAGATTTT--------TACACACACGNTTCTCCTTGCACTGCCAANACA 185 ******************* * ** * * ** * ** * * consensus_5311#0 CTCATTATCGTCCCGCGGTCAATCGCAGGGCTTTAGTTTGCTTTCCATGTTTGGAACGGC 600 consensus_5311#1 TGCTTCTCTACACACTTGCTTGTCTCGNGACTANGCCCTTCCTCCATTACATTGGTCCCT 245 * * * * ** * * ** * * * * * * * * consensus_5311#0 GAACGATACCAGCGATAGCAAGATGCACGTAGATGAAACGTTGTACGATAAGCCGCTGAA 660 consensus_5311#1 GCTGTGCTCAAATCTCTGCCAGGGCCTTCTAGGTTTTGC-TNTTCCACTTGTTCTTGGAA 304 * * * ** ** * *** * * * * * * * *** consensus_5311#0 AAGTGATG--CCAAGTTCCGGTATGAATCTTCCGATAGTGAGGATGAACAGAGTCGCAAA 718 consensus_5311#1 CTGTGCTGAACTGAATACCATGCTGAATANGCACATGATTGCACTGTAATGACTTG---A 361 *** ** * * * ** ***** * ** * ** * ** * * * consensus_5311#0 AAACAGAAGAAACACGAAACTAAAGCCGATGGTGAAAAGGAAGGGAAAGGAAAAGAAAAA 778 consensus_5311#1 AAACGGTTG---TACCGAATTAAAGCCTGCATTGGAAAAATGCTGATTGCGCAAAGGTTT 418 **** * * ** ** ******* ** *** ** * ** consensus_5311#0 CTGAAAAAGAACAAAGCAGGCAAAACTGGGTCAGGATATTACACGAAGCAGGGAATATGG 838 consensus_5311#1 CCCTGGCGTA------CTGGAAACATCTTCCCCGGATNTANGGGTTGGAAGGGGAC-TGA 471 * * * ** ** * * **** * * **** * ** consensus_5311#0 CAAGGACTTCTTTTTCTTCCCTTCCAAATGATTCACGTCTCGATGCTGGCCGAGAATTTC 898 consensus_5311#1 CAAGCGCAGGAAAGGT---CCTGGCAAATAA----------AAAAACAACCAAGGA---C 515 **** * *** ***** * * ** ** * * consensus_5311#0 TAGGCTACGTTCCTAATACGGACGGCAGTT-TAAAATCAGCCAAGGAAGCGGTAGTCGGA 957 consensus_5311#1 AATGCAAAACAAC-ANCACGGAAAAACGTTACAGAATCGGCCCCTGNAGACTTGGTGGTT 574 * ** * * * ***** *** * **** *** * ** * ** * consensus_5311#0 TTGACCGAGACTGATGTGCAAAACATTCGCCAA--TTGTACAAAAAACGACGACAACGCG 1015 consensus_5311#1 TCGAACACAACACATGTG-GACACGTGGGACAACATGGTGCACAAGAN-ATGACA----G 628 * ** * ** ***** * ** * * *** * ** ** ** * * **** * consensus_5311#0 AAAGTAAATTTGNTCACAAAGAATCGAAACTAGGTCTTAAGCGGCTTAAAATG 1068 consensus_5311#1 AGAATACCTTCGGACACG----------------------------------- 646 * * ** ** * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||