These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 910 fasta sequence [TTGCCCGAGGCTNAATAGAGAGTAGTTATTGTAAAAATTTACAATACAAGAAAGCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGCAAGCCCTATAGCAACGTGTAGCAACGCAACTGTGGCGTATCAACTTAGCACTGGGCTTGCTGCTGCAGACAGCGCGCGTTCTATACAACCTCTTCTCTACCTAAACACAACAGGACTACTGCACAGGCACACAGNATGGTACTGCCTAACACGGCTGCTCNCTACCACAANACCACTCTCCACCTCNNNTCNCCTTGGCTTCTTCCCGCACCTNGGCGTACTGCTANAACGCGAACCGTTTCGTGGGAACTCTNATAAAANACCCCTTCTTCTAACACCACCGANCCNACAACGGTGCCACACANGCCGCNTNCCGACAACCCTTTACCACCANCCCTTCCCGNCAACATTGGCCCTTTCCCCCCCTTNAAAGCGCCCCAAGTAGNAAGCGGACATAGGCCTCACACCATAGGGGCCTANACAAGCGGCGACAAAACACCACCCCATTTGGGGGGACACTACAGCACCCTACCGCCCGCACAGCGCTGGGCAACANCTTATAACACGACCGAAAACAAACCGGGCCAANCAAACCCCCCAACGACCTTAAAACCCGCCCGCTNTGGGTGCGACACCCCCGAGACCCCTATTTAAACGGAGCCNCGCACCCTCANAGACACCGACNAACGACCGCCCCCGCTTCCCCACACAACAGCCCGCCACGAACCCAAACCGCCCGGCGCANCCCCCTGACGCGAAACCAACGACCCCACGANCCCC] [+] EMBL AL930457 [TTGCCCGAGGCTNAATAGAGAGTAGTTATTGTAAAAATTTACAATACAAGAAAGCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGCAAGCCCTATAGCAACGTGTAGCAACGCAACTGTGGCGTATCAACTTAGCACTGGGCTTGCTGCTGCAGACAGCGCGCGTTCTATACAACCTCTTCTCTACCTAAACACAACAGGACTACTGCACAGGCACACAGNATGGTACTGCCTAACACGGCTGCTCNCTACCACAANACCACTCTCCACCTCNNNTCNCCTTGGCTTCTTCCCGCACCTNGGCGTACTGCTANAACGCGAACCGTTTCGTGGGAACTCTNATAAAANACCCCTTCTTCTAACACCACCGANCCNACAACGGTGCCACACANGCCGCNTNCCGACAACCCTTTACCACCANCCCTTCCCGNCAACATTGGCCCTTTCCCCCCCTTNAAAGCGCCCCAAGTAGNAAGCGGACATAGGCCTCACACCATAGGGGCCTANACAAGCGGCGACAAAACACCACCCCATTTGGGGGGACACTACAGCACCCTACCGCCCGCACAGCGCTGGGCAACANCTTATAACACGACCGAAAACAAACCGGGCCAANCAAACCCCCCAACGACCTTAAAACCCGCCCGCTNTGGGTGCGACACCCCCGAGACCCCTATTTAAACGGAGCCNCGCACCCTCANAGACACCGACNAACGACCGCCCCCGCTTCCCCACACAACAGCCCGCCACGAACCCAAACCGCCCGGCGCANCCCCCTGACGCGAAACCAACGACCCCACGANCCCC] consensusID : consensus_5312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [GGCCAAGAATCGGCACGANNGGCAGTGTCTTCTCAAGCAAAACACGCTACCGCCGGCAGTTGGGCTGAGAAAATTGTGCCCACCAACGGAACGCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCTTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCCAGACCGCTAACGCATCATAAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATGTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTCTAACTGTAACTAACAATTGAAACAAAACAAAACAGTAACCGAACACAAGAAAGTCANATTTAAGAGAACAGGAGATAAGAGAAACAGGATAACTAAATAGTAAAGAGAGTCATTGAGGAGTTATTGTAAAAAAGAAAGCAGAGTTACAGTAGAGAGTATTTAAAANACCANAAAAACCAAAGGTACGNTAAGCCAATGGGAANNAATGGACCGTAAAAAGCATGTTGTAAGCCCAATAACACGAAACAGTAAACCCAACCTAGNAAACGACGTATANAAAC] [+] EMBL BX468378 [GGCCAAGAATCGGCACGANNGGCAGTGTCTTCTCAAGCAAAACACGCTACCGCCGGCAGTTGGGCTGAGAAAATTGTGCCCACCAACGGAACGCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCTTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCCAGACCGCTAACGCATCATAAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATGTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTCTAACTGTAACTAACAATTGAAACAAAACAAAACAGTAACCGAACACAAGAAAGTCANATTTAAGAGAACAGGAGATAAGAGAAACAGGATAACTAAATAGTAAAGAGAGTCATTGAGGAGTTATTGTAAAAAAGAAAGCAGAGTTACAGTAGAGAGTATTTAAAANACCANAAAAACCAAAGGTACGNTAAGCCAATGGGAANNAATGGACCGTAAAAAGCATGTTGTAAGCCCAATAACACGAAACAGTAAACCCAACCTAGNAAACGACGTATANAAAC] consensusID : consensus_5312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [GCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGAAGCCCTATAGAACGTGTAGAAGAATGTGGCGTATCAATTAGACTGGGTTGCTGCTGCAGAAGCGCGCGTTTATACAACTTTTTACTAAACAAAAGATATGAAGCAAAATGTATGCTAAAGTGTTTACAAACATTCATTTTCTGTTCGATGTTTTAGATTGATTTAACTTTAAAACAAGCAACTCAATAAATCGATGCTCCTAGCAGGAGTGTATGTAAGAACTGTTTTCATGATAGAAGAACATACTGACATAGCCAAAACCTCAACAAACGACGAACTCGAACGCCCGGTTGAAGGAAACAATGAACAAACCAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATTTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTAATGTAACTAACAATTGAAACACGAAAACACGAGAAGATCACAAGTAAACCTACAAATTGCACTAGAAAAAGGAAAGCAAAATAAAAGGGGGAAGAAAGAATTAAGAAGCACAGAAGAATACAGAACATAGTAAGAGAATGTAAAGCATAAAAAACATATGA] [+] EMBL BX622149 [GCAGATTACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCATGTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAACATAAACGAGAAGCCCTATAGAACGTGTAGAAGAATGTGGCGTATCAATTAGACTGGGTTGCTGCTGCAGAAGCGCGCGTTTATACAACTTTTTACTAAACAAAAGATATGAAGCAAAATGTATGCTAAAGTGTTTACAAACATTCATTTTCTGTTCGATGTTTTAGATTGATTTAACTTTAAAACAAGCAACTCAATAAATCGATGCTCCTAGCAGGAGTGTATGTAAGAACTGTTTTCATGATAGAAGAACATACTGACATAGCCAAAACCTCAACAAACGACGAACTCGAACGCCCGGTTGAAGGAAACAATGAACAAACCAAAAGAGTAAACAATAGAAAAGGAAGAAAAGAAAATTTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATGTGTAGAAACGTGGCAACACAACTAACAGAAAACACTATGCTTTTTAATGTAACTAACAATTGAAACACGAAAACACGAGAAGATCACAAGTAAACCTACAAATTGCACTAGAAAAAGGAAAGCAAAATAAAAGGGGGAAGAAAGAATTAAGAAGCACAGAAGAATACAGAACATAGTAAGAGAATGTAAAGCATAAAAAACATATGA] consensusID : consensus_5312#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TAATATGCGATGGCATTTGGGCGAATCGGTTGGGGCAATTTGATGGAAGCTAAAACGAATTAATAAAGCGAAAAACTCCCCAAACTGTAGGCAATTTCGGGTGTTGATAATCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCCTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCTAGACCGGTAAGTGTTTGAATGTGTGAACGCGCCCCGCCCGAACCATTCTATTGCAGTTGAATTATTCCCACTCATCGCGCTCAAGTGCGCAGTGCGTTTAAGG] [+] EMBL CNS08NLW [TAATATGCGATGGCATTTGGGCGAATCGGTTGGGGCAATTTGATGGAAGCTAAAACGAATTAATAAAGCGAAAAACTCCCCAAACTGTAGGCAATTTCGGGTGTTGATAATCGGACTGAAGATCACATCCAATTGACCTACATTTGACTCTTGCCTCACGCTGCAGGAAGTGGCTGTTTGTTGGTTAAAAATAGAAACGCCAGCCTTACCAGTGTGCCATTGGCGTGAACTCTCCCGGCAAGCTTCAGGTGACCAGATGAGCTAACACCACGCTAAGCTAGCCGATCGGAAGCGCTGATAAAGCCAACTGCACTTGAGCAGCAGCAGCAGCGGTGCATCGAGGCGGTGTCATCCCTGCCCTAGACCGGTAAGTGTTTGAATGTGTGAACGCGCCCCGCCCGAACCATTCTATTGCAGTTGAATTATTCCCACTCATCGCGCTCAAGTGCGCAGTGCGTTTAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5312#1 ------------------------------------------------------------ consensus_5312#3 ------------------------------------------------------------ consensus_5312#2 -----------------------------------------------------GCAGATT 7 consensus_5312#0 TTGCCCGAGGCTNAATAGAGAGTAGTTATTGTAAAAATTTACAATACAAGAAAGCAGATT 60 consensus_5312#1 --------------------------------GGCCAAGAATCGGCACGANNG--GCAGT 26 consensus_5312#3 ---------------------TAATATGCGATGGCATTTGGGCGAATCGGTTGGGGCAAT 39 consensus_5312#2 ACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCAT 67 consensus_5312#0 ACATAAATATTAAAAACAAAAACAAAGTACGTAGCAATGGGAGAATGAACATAAAAGCAT 120 ** * consensus_5312#1 GTCTTCTCAAGCAAAACACGCTACC---GCCGGCAGTTGGG---------CTGA--GAAA 72 consensus_5312#3 TTGATGGAAGCTAAAACGAATTAATAAAGCGAAAAACTCCC---------CAAACTGTAG 90 consensus_5312#2 GTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAAC 127 consensus_5312#0 GTGTAAGCAAATAAAAGAAAGTAAACCAACTAGAAAGAAGGTATAAACAACAGACAGAAC 180 * * **** ** * * * * * * consensus_5312#1 ATTG-TGCC-CACCAACGGAA-CGCGGACTGAAG----ATCACATCCAATTGACCTAC-A 124 consensus_5312#3 GCAA-TTTC-GGGTGTTGATA-ATCGGACTGAAG----ATCACATCCAATTGACCTAC-A 142 consensus_5312#2 ATAAACGAG-AAGCCCTATAG-AACGTGTAGAAG----AATGTGGCGTATCAAT-TAG-A 179 consensus_5312#0 ATAAACGAGCAAGCCCTATAGCAACGTGTAGCAACGCAACTGTGGCGTATCAACTTAGCA 240 ** * * * * ** * ** * consensus_5312#1 TTTGA-CTCTTGCTTCA-----CGCTGCAG-GAAGTGGCTGTTTGTTGGTTAAAA-ATA- 175 consensus_5312#3 TTTGA-CTCTTGCCTCA-----CGCTGCAG-GAAGTGGCTGTTTGTTGGTTAAAA-ATA- 193 consensus_5312#2 CTGGG-TTGCTGCTGCAGA-AGCGCGCGTT-TATACAACTTTTTACTAAACAAAAGATAT 236 consensus_5312#0 CTGGGCTTGCTGCTGCAGACAGCGCGCGTTCTATACAACCTCTTCTCTACCTAAACACA- 299 * * * *** ** *** * * ** *** * * consensus_5312#1 GAAACGCCAGCCTTACCAGTGTGCC-ATTGGCGTGAACTCTCCCGGCAA-GCTTCAGGT- 232 consensus_5312#3 GAAACGCCAGCCTTACCAGTGTGCC-ATTGGCGTGAACTCTCCCGGCAA-GCTTCAGGT- 250 consensus_5312#2 GAAGCAAAATGTATGCTAAAGTGTTTACAAACATTCATTTTCTGTTCGATGTTTTAGATT 296 consensus_5312#0 -ACAGGACTACTGCACAGGCACACAGNATGGTACTGCCTAACACGGCTGCTCNCTACCAC 358 * * * * * * consensus_5312#1 GACCAGAT----GAGCTAACACCACGCTAAGCTAG----CCGATCGGAAGCGCTGATAA- 283 consensus_5312#3 GACCAGAT----GAGCTAACACCACGCTAAGCTAG----CCGATCGGAAGCGCTGATAA- 301 consensus_5312#2 GATTTAACTTTAAAACAAGCAACTCAATAAATCGATGCTCCTAGCAGGAGTGTATGTAAG 356 consensus_5312#0 AANACCACTCTCCACCTCNNNTCNCCTTGGCTTCTTCCCGCACCTNGGCGTACTGCTAN- 417 * * * * * * * * * * ** consensus_5312#1 AGCCAACTGCAC--TTGAGCAGCA-----GCAGCAGCGGTGCATCGA-----GGCGGTGT 331 consensus_5312#3 AGCCAACTGCAC--TTGAGCAGCA-----GCAGCAGCGGTGCATCGA-----GGCGGTGT 349 consensus_5312#2 AACTGTTTTCATGATAGAAGAACATACTGACATAGCCAAAACCTCAACAAACGACGAACT 416 consensus_5312#0 AACGCGAACCGTTTCGTGGGAACTCTNATAAAANACCCCTTCTTCTAACACCACCGANCC 477 * * * * * * * * ** * ** consensus_5312#1 C--ATCCCTGCCCCA--GACCGCTAACGCATCA-TAAAAAGAGTAAACAATAGAAAAGGA 386 consensus_5312#3 C--ATCCCTGCCCTA--GACCGGTAA---GTGT-TTGAATGTGTGAACGCGCCCCGCCCG 401 consensus_5312#2 CGAACGCCCGGTTGA--AGGAAACAATGAACAAACCAAAAGAGTAAACAATAGAAAAGGA 474 consensus_5312#0 NACAACGGTGCCACACANGCCGCNTNCCGACAACCCTTTACCACCANCCCTTCCCGNC-A 536 * * * * * consensus_5312#1 AGAAAAGAAAATGTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATG 446 consensus_5312#3 AACCATTCTATTGCAGTTGAATTATT----CCCACTCATCG--CGCTCAAGTGCGCAGTG 455 consensus_5312#2 AGAAAAGAAAATTTAACTTAATTAAAGAGGTTCAACAATCGGACACCCGATGGAAAGATG 534 consensus_5312#0 ACATTGGCCCTTTCCCCCCCTTNAAAGCGCCCCAAGTAGNAAGCGGACATAGGCCTCACA 596 * * * * ** * * * * consensus_5312#1 TGTAGAAACGTGGCAACACAACTAAC-AGAAAACACTATGCTTTTTCTAACTGTAACTAA 505 consensus_5312#3 CGTTTAAGG--------------------------------------------------- 464 consensus_5312#2 TGTAGAAACGTGGCAACACAACTAAC-AGAAAACACTATGCTTTTT---AATGTAACTAA 590 consensus_5312#0 C---CATAGGGGCCTANACAAGCGGCGACAAAACACCACCCCATTTGGGGGGACACTACA 653 * consensus_5312#1 CAATTGAAACAAAACAAAACAGTAACCGAACACAAGAAAGTCANATTTAAGAGAACAGGA 565 consensus_5312#3 ------------------------------------------------------------ consensus_5312#2 CAATTGAAACACGA-------------AAACACGAGAAGATCACAAGTAAACCTACAAAT 637 consensus_5312#0 GCACCCTACCGCCCGCACAGCGCTGGGCAACANCTTATAA-CACGACCGAAAACAAACCG 712 consensus_5312#1 GATAAGAGAAACAGGATAACTAAATAGTAAAGAGAGTCATTGAGGAGTTATTGTAAAAAA 625 consensus_5312#3 ------------------------------------------------------------ consensus_5312#2 TGCACTAGAAAAAGGAAAGCAAAATAAAAGGGGGAAGAAAGAATTAAGAA--GCACAGAA 695 consensus_5312#0 GGCCAANCAAACCCCCCAACGACCTTAAAACCCGCCCGCTNTGGGTGCGACACCCCCGAG 772 consensus_5312#1 GAAAGCAGAGTTACAGTAGAGAGTATTTAAAANACCANAAAAACCAAAGGTACGNTAAGC 685 consensus_5312#3 ------------------------------------------------------------ consensus_5312#2 GAATACAGAAC-ATAGTA-AGAGAATGTAAAGCATAAAAAACATATGA------------ 741 consensus_5312#0 ACCCCTATTTAAACGGAGCCNCGCACCCTCANAGACACCGACNAACGACCGCCCCCGCTT 832 consensus_5312#1 CAATGGGAANNAATGGACCGTAAAAAGCATGTTGTAAGCCCAATAACACGAAACAGTAAA 745 consensus_5312#3 ------------------------------------------------------------ consensus_5312#2 ------------------------------------------------------------ consensus_5312#0 CCCCACACAACAGCCCGCCACGAACCCAAACCGCCCGGCGCANCCCCCTGACGCGAAACC 892 consensus_5312#1 CCCAACCTAGNAAACGACGTATANAAAC 773 consensus_5312#3 ---------------------------- consensus_5312#2 ---------------------------- consensus_5312#0 AACGACCCCACGANCCCC---------- 910 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||