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Anopheles gambiae
cluster # 5317 cluster # 5317       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5317#0 length = 863 sequences # 3  
consensus_5317#1 length = 517 sequences # 1  

consensusID : consensus_5317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 863
fasta sequence
                              [GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACAGCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGAT-ACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA]

[+] EMBL AL932069             [GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACAGCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGG CACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGA CGGCTGCGCCAT                                                                                                                                                                                                                                                                              ]
[+] EMBL BM617968             [                                                                                          ccgAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGAT ACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA]
[+] EMBL BM607120             [                                                                                                                                                                                        ccgAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCGGATC TTCGC CGGTGTCGAAGATG CTGAA CCCGCTGTGGCCGATAACGGTT  CGCGGGACCGTAC GGGCCGTCGCTTGGTG AGCCGGTTCCGGC AGGAC TTTGGGGATGAAGTTTT  CCAACG TCATCACG                                              ]


>consensus_5317#0 GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACA GCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGT GCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCG CTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTG GGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCG AACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAAC CTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGC AGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCG ATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATG GGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATA CTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATC CGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGC CGATACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGG ACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCC GAAATTAACTTCCCCCAGGGCCA



consensusID : consensus_5317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence
                              [ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGAACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAGCTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCGCTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC]

[+] EMBL AL930537             [ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGAACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAGCTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCGCTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC]


>consensus_5317#1 ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGA ACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACC AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGG TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAG CTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCG CTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTC CGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5317#0      ---------------------------GATCCCCCGAGGTTNGGTTGGAA-GTGACTCGA 32
consensus_5317#1      ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGA 60
                                                 *    **** *    ******** *********

consensus_5317#0      ACGCGCAGCGATGG-CAGCG-GAAGC-GACAGCGACAGCACCGAC-GGCAGCATTCGACC 88
consensus_5317#1      ACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACC 120
                      *************  ***** ***** ****************** **************

consensus_5317#0      AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAA-GGCTGGTTCAACTGG 147
consensus_5317#1      AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGG 180
                      ******************************************** ***************

consensus_5317#0      TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG 207
consensus_5317#1      TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG 240
                      ************************************************************

consensus_5317#0      AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG 267
consensus_5317#1      AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG 300
                      ************************************************************

consensus_5317#0      ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCG-TGCTGGTGCACGG 326
consensus_5317#1      ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAG 360
                      ********************************************** **** * *  * *

consensus_5317#0      GCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCC 386
consensus_5317#1      CT----GGTGCTCGGCGTGCTGTGCGCGTCGC-TGCTGTGGCG-TTGCTTG---ACACCC 411
                            ** *  ** ** ****** * *  *     **  *** * **  *    *  **

consensus_5317#0      GGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGA 446
consensus_5317#1      CTTGCAC-CGCT--GCTCGCCCCGCGCCACGCN-GGCCTGGTGTACTGCGACTCGACTGT 467
                        ** ** ** *   *  ** * *   *  **   **  *  *  * **  *** ** * 

consensus_5317#0      CCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAA 506
consensus_5317#1      GCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC---------- 517
                       **  ***   **    *** **  *       *  *   *  *  *  *          

consensus_5317#0      CCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGC 566
consensus_5317#1      ------------------------------------------------------------
                                                                                  

consensus_5317#0      GCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGA 626
consensus_5317#1      ------------------------------------------------------------
                                                                                  

consensus_5317#0      GAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCG 686
consensus_5317#1      ------------------------------------------------------------
                                                                                  

consensus_5317#0      CGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGATACGGTTTCCCCGGGACCGTACG 746
consensus_5317#1      ------------------------------------------------------------
                                                                                  

consensus_5317#0      GGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAA 806
consensus_5317#1      ------------------------------------------------------------
                                                                                  

consensus_5317#0      CGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA 863
consensus_5317#1      ---------------------------------------------------------
                                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)