These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 977 fasta sequence [GATCGCCCGAGGTTTTTCCCAGTTTAAGTTCGTCGTNGTGCATCAAACAGTGAATCGTTGTGTTTTGAGACGTGATTGTTTAAAAGCTGTTTAGTTAATGTGTCGCTATTACCTACAGATGGATTGGTTACAGTGTGTGGATTTGTTTGCACAATCAACCACTTTATGAAGTAGGATTACTAAGTCTTTCGAAAACCAATGCGATAACATAAGCCGCAAATTATGCGTACTACGTCAGTGTTGAGTAACACATGTGTTCGCGTTTACAGTGGCAATTGGTGCGGAGGAACATCCAAGGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCGTCATAATAGACACAGACATCGGGCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTCGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACTAATGGAACATCGGTTGAACTGGGGACACTGTTTGAAAGTCTTCCGTTTGACGTGATTCGTATGAATATCATTTGGTGCTATAACTTTCCTGATATGAACATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATACTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACTCAGTTCTTTAGGCTTCGAGCGGATGCGGAAAGTATGGCCCAAAACGTATTGGGCGACATTCGCCAGCGTTCTAAACTGTACGGCGATGANG] [+] EMBL AL930913 [GATCGCCCGAGGTTTTTCCCAGTTTAAGTTCGTCGTNGTGCATCAAACAGTGAATCGTTGTGTTTTGAGACGTGATTGTTTAAAAGCTGTTTAGTTAATGTGTCGCTATTACCTACAGATGGATTGGTTACAGTGTGTGGATTTGTTTGCACAATCAACCACTTTATGAAGTAGGATTACTAAGTCTTTCGAAAACCAATGCGATAACATAAGCCGCAAATTATGCGTACTACGTCAGTGTTGAGTAACACATGTGTTCGCGTTTACAGTGGCAATTGGTGCGGAGGAACATCCAAGGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCGTCATAATAGACACAGACATCGGGCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCC ] [+] EMBL BX624084 [ ATCGGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTCGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACTAATGGAACATCGGTTGAACTGGGGACACTGTTTGAAAGTCTTCCGTTTGACGTGATTCGTATGAATATCATTTGGTGCTATAACTTTCCTGATATGAACATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATACTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACTCAGTTCTTTAGGCTTCGAGCG ] [+] EMBL BX624028 [ ATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTCGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACTAATGGAACATCGGTTGAACTGGGGACACTGTTTGAAAGTCTTCCGTTTGACGTGATTCGTATGAATATCATTTGGTGCTATAACTTTCCTGATATGAACATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATACTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACTCAGTTCTTTAGGCTTCGAGCGGATGCGGAAAGTATGGCCCAAAACGTATTGGGCGACATTCGCCAGCGTTCTAAACTGTACGGCGATGANG] consensusID : consensus_5325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [GCAGAATCNCCACGAGNNTCAGAAATTAGCGTACTACGTCACTTTGATAAAATGTTTCGCTTTACGTGGCAATTGGTGCGGAGGAACATCAAGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCTCATAATAGACACAGCACATCGGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTACGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACCTAACTGGAACATCGGTTGAACTGGGGACACTGTTTCGAAAGTCTTNGCCGTTTGACGTGATTCGTCATGCAATATCATTTCGGTCGCTATAAACTTTACCTGATATGAAACATTTTGAACAGGTGACCAC] [+] EMBL BX467277 [GCAGAATCNCCACGAGNNTCAGAAATTAGCGTACTACGTCACTTTGATAAAATGTTTCGCTTTACGTGGCAATTGGTGCGGAGGAACATCAAGCCTCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCTCATAATAGACACAGCACATCGGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACGAGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCGATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGATCCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACTTTTACGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAAATTATGCTGACCTAACTGGAACATCGGTTGAACTGGGGACACTGTTTCGAAAGTCTTNGCCGTTTGACGTGATTCGTCATGCAATATCATTTCGGTCGCTATAAACTTTACCTGATATGAAACATTTTGAACAGGTGACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5325#0 GATCGCCCGAGGTTTTTCCCAGTTTAAGTTCGTCGTNGTGCATCAAACAGTGAATCGTTG 60 consensus_5325#1 ------------------------------------------------------------ consensus_5325#0 TGTTTTGAGACGTGATTGTTTAAAAGCTGTTTAGTTAATGTGTCGCTATTACCTACAGAT 120 consensus_5325#1 ------------------------------------------------------------ consensus_5325#0 GGATTGGTTACAGTGTGTGGATTTGTTTGCACAATCAACCACTTTATGAAGTAGGATTAC 180 consensus_5325#1 ------------------------------------------------------------ consensus_5325#0 TAAGTCTTTCGAAAACCAATGCGATAACATAAGCCGCAAATTATGCGTACTACGTCAGTG 240 consensus_5325#1 ---------------GCAGAATCNCCACGAGNNTCAGAAATTA-GCGTACTACGTCACT- 43 ** ** * ****** ************* * consensus_5325#0 TTGAGTAACACATGTGTTCGCGTTTACAGTGGCAATTGGTGCGGAGGAACATCCAAGGCC 300 consensus_5325#1 TTGATAAA---ATGT-TTCGC-TTTAC-GTGGCAATTGGTGCGGAGGAACATC--AAGCC 95 **** ** **** ***** ***** ************************* * *** consensus_5325#0 TCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGCGTCATAATAGACACAG-ACATC 359 consensus_5325#1 TCTTATCTTGATAGTGTCGTTCCTGACGTTTATATGGC-TCATAATAGACACAGCACATC 154 ************************************** *************** ***** consensus_5325#0 GGGCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACG 419 consensus_5325#1 GGCCTGAATTTGTGCGGCACGCATCGAAACATTCCTTCCGATTTGGGAACAATGCAAACG 214 ** ********************************************************* consensus_5325#0 AGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCG 479 consensus_5325#1 AGCCAGCTGAACACTGGTTCGAGCGGACACTTGAACAGTTCCTAGAGTTACTCGAGCTCG 274 ************************************************************ consensus_5325#0 ATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGAT 539 consensus_5325#1 ATTCCAACGTTACCGCAGACGAGAGCCGGAACAGTTTCGAACCATTGAATTGTCCACGAT 334 ************************************************************ consensus_5325#0 CCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACT 599 consensus_5325#1 CCAATACGCTGTTCACTGCGTTTACGGGGAGCACACTAGAGGAAAGTTTGTGGCATTACT 394 ************************************************************ consensus_5325#0 TTT-CGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAA 658 consensus_5325#1 TTTACGCTGGTGGCCATACAAAATAGCATTAAGACGACATCGGAAGAATATCAAGCACAA 454 *** ******************************************************** consensus_5325#0 ATTATGCTGACTAA--TGGAACATCGGTTGAACTGGGGACACTGTTT-GAAAGTCTTC-- 713 consensus_5325#1 ATTATGCTGACCTAACTGGAACATCGGTTGAACTGGGGACACTGTTTCGAAAGTCTTNGC 514 *********** * ******************************* ********* consensus_5325#0 CGTTTGACGTGATTCGT-ATG-AATATCATTTGG--TGCTATAACTTT--CCTGATATGA 767 consensus_5325#1 CGTTTGACGTGATTCGTCATGCAATATCATTTCGGTCGCTATAAACTTTACCTGATATGA 574 ***************** *** ********** * ******* ** ********** consensus_5325#0 A-CATTTTGAACAGTGACACAGCCATTCAGATTGACAAAGGCGTTAAGCAGCTATTCATA 826 consensus_5325#1 AACATTTTGAACAG-GTGACCAC------------------------------------- 596 * ************ * ** * consensus_5325#0 CTCAATAATCAAGCTAAACGATTTGAAGAAATCCTAAAAGTACCATGGGAACAACATACT 886 consensus_5325#1 ------------------------------------------------------------ consensus_5325#0 CAGTTCTTTAGGCTTCGAGCGGATGCGGAAAGTATGGCCCAAAACGTATTGGGCGACATT 946 consensus_5325#1 ------------------------------------------------------------ consensus_5325#0 CGCCAGCGTTCTAAACTGTACGGCGATGANG 977 consensus_5325#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||