These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTG] [+] EMBL BX626809 [CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTG] consensusID : consensus_5329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [GGCAGATCCGCACGAGGGTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGTGAAGCATTTGCGCGCGGGTTCAGGTGTAGAAACACCATGGAAACGAAACGTAACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAGCAAATCGT] [+] EMBL BX467978 [GGCAGATCCGCACGAGGGTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGTGAAGCATTTGCGCGCGGGTTCAGGTGTAGAAACACCATGGAAACGAAACGTAACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAGCAAATCGT] consensusID : consensus_5329#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAGTACAACACCGCTTACGCGTGCCTATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTAAATAATAGTAATATTTTACCTATATTTCTTTGTTGCTTTTTATACACTACTTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAACAGATATAGGTCGTTTGTTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGCGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTGATTCATTTAAAACATTACTATCCTTGTACCTAT] [+] EMBL BM589028 [CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAGTACAACACCGCTTACGCGTGCCTATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTAAATAATAGTAATATTTTACCTATATTTCTTTGTTGCTTTTTATACACTACTTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAACAGATATAGGTCGTTTGTTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGCGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTGATTCATTTAAAACATTACTATCCTTGTACCTAT] consensusID : consensus_5329#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [ATCGCCCGAGGTTTTTTGTTTGTTTGTTAGCCATGTAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAACAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGTAGAAACACCATGGAAACGAAACGTAACAGCGGCANCNCANCTCGTAGTNAAG] [+] EMBL AL931083 [ATCGCCCGAGGTTTTTTGTTTGTTTGTTAGCCATGTAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAACAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGTAGAAACACCATGGAAACGAAACGTAACAGCGGCANCNCANCTCGTAGTNAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5329#1 ------------------------------------------------------------ consensus_5329#3 ------------------------------------------------------------ consensus_5329#0 CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACA 60 consensus_5329#2 -------------------CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACA 41 consensus_5329#1 ------------------------------------------------------------ consensus_5329#3 ------------------------------------------------------------ consensus_5329#0 AAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCG 120 consensus_5329#2 AAAAA---AAGTACAACACCGCTTACGCGT----GCCTATTGAGTGTGTGATATTTCTCG 94 consensus_5329#1 ------------GGCAGATCCGCACGAGGGTTTTTTTT-ATAAATAATAATAATATTTTA 47 consensus_5329#3 ------------------------------------------------------------ consensus_5329#0 TGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTA 180 consensus_5329#2 TGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTT---AAATAATAGTAATATTTTA 151 consensus_5329#1 ACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTT--GTT--TTTGTTAGCCATGTA 103 consensus_5329#3 --------------------ATCGCCCGAGGTTTTTTG--TTTG-TTTGTTAGCCATGTA 37 consensus_5329#0 ACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTT-GTTTGTTTTGTTAGCCATGTA 239 consensus_5329#2 CCTATATTTCTTTGTTGCTTTTTATACACTACTTTTTTTGTTTGTTTTGTTAGCCATGTA 211 * * ***** ** *************** consensus_5329#1 AGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 163 consensus_5329#3 -GCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 96 consensus_5329#0 AGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 299 consensus_5329#2 AGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 271 *********************************************************** consensus_5329#1 GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 223 consensus_5329#3 GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 156 consensus_5329#0 GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 359 consensus_5329#2 GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 331 ************************************************************ consensus_5329#1 CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAA--GATATAGGTCGTTTGC 281 consensus_5329#3 CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAA--GATATAGGTCGTTTGC 214 consensus_5329#0 CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAA--GATATAGGTCGTTTGC 417 consensus_5329#2 CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAACAGATATAGGTCGTTTGT 391 ****************************************** *************** consensus_5329#1 TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 341 consensus_5329#3 TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 274 consensus_5329#0 TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 477 consensus_5329#2 TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 451 ************************************************************ consensus_5329#1 ACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 401 consensus_5329#3 ACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 334 consensus_5329#0 ACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 537 consensus_5329#2 ACAAAGTGTGCGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 511 ********** ************************************************* consensus_5329#1 ATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCAT 461 consensus_5329#3 ATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCAT 394 consensus_5329#0 ATTCATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCAT 597 consensus_5329#2 ATTCATTTAGTCTTCTCCTTGTTCATTGATTCATTTAAAACATTACTATCCTTGTACC-T 570 ********************* ***** ************************ ***** * consensus_5329#1 AATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAA-AATATGCGAACGAAG 520 consensus_5329#3 AATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAACAATATGCGAACGAAG 454 consensus_5329#0 AATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAA-AATATGCGAACGAAG 656 consensus_5329#2 AT---------------------------------------------------------- 572 * consensus_5329#1 GAACAGGTTGGCTTGTGCTGCGTACCTG-TGAA-GCATT-TGCGCGCGGGTTCAGG-TGT 576 consensus_5329#3 GAACAGGTTGGCTTGTGCTGCGTACCTGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGT 514 consensus_5329#0 GAACAGGTTGGCTTGTGCTG---------------------------------------- 676 consensus_5329#2 ------------------------------------------------------------ consensus_5329#1 AGAAACACCATGGAAACGAAACGTAACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAG 636 consensus_5329#3 AGAAACACCATGGAAACGAAACGTAACAGCGGCANCNCANCTCGTAGTNAAG-------- 566 consensus_5329#0 ------------------------------------------------------------ consensus_5329#2 ------------------------------------------------------------ consensus_5329#1 CAAATCGT 644 consensus_5329#3 -------- consensus_5329#0 -------- consensus_5329#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||