These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTGAGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTGGGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATCTGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGTTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCCGACGAGTTGTCCTATCTGTTCAATGGCAGTCAAATTACTGTCCCGGTTGAGGCCGGCTCGGTGGCGGATCAGGGCCGCGACACTGCTCTGCCGTCTGTGGACCAACTTTGCCAAGTTTGGCCAGGCCTACGGCCGGAGGAGACGATGTTGGGCTTCCAGTGGGACCCGCGTGGCACCGACGCGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACNGAGCAGGGTGCAAGTGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTTTGGAGGGTCCCGACTGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCGTATGAGAGGGCGGGGACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAGCGNTTAGAAANATTCCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANNACACGAAC] [+] EMBL BX467657 [CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTGAGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTGGGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATCTGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGTTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCCGACGAGTTGTCCTATCTGTTCAATGGCAGTCAAATTACTGTCCCGGTTGAGGCCGGCTCGGTGGCGGATCAGGGCCGCGACACTGCTCTGCCGTCTGTGGACCAACTTTGCCAAGTTTGGCCAGGCCTACGGCCGGAGGAGACGATGTTGGGCTTCCAGTGGGACCCGCGTGGCACCGACGCGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACNGAGCAGGGTGCAAGTGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTTTGGAGGGTCCCGACTGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCGTATGAGAGGGCGGGGACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAGCGNTTAGAAANATTCCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANNACACGAAC] consensusID : consensus_533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [AGAATCGCACGAGGTNAACGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGGATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCANGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGGACGGTACACCGGGAGCGGGCCATGCCGACGAGTTGTCCTATCTGTTCAACTGGGCAGTCAAATTACTGTCCCGGTTGAGAGCACGGCATCGGTGGCGGATCAGGGGCCGCACACTGCTCTTGCAGTCTGTGGAACCAACTTTTGCCAAAGTTTTGGCAAGCCTACGCCCGGAAGGANGACCGATGTTGGTTCCAAGATGGGGAACCG] [+] EMBL BX469280 [AGAATCGCACGAGGTNAACGTAATCGAGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGGATTGGGCCACCTGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGCATTCCCGCTTCCAGCANGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGCTGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGGACGGTACACCGGGAGCGGGCCATGCCGACGAGTTGTCCTATCTGTTCAACTGGGCAGTCAAATTACTGTCCCGGTTGAGAGCACGGCATCGGTGGCGGATCAGGGGCCGCACACTGCTCTTGCAGTCTGTGGAACCAACTTTTGCCAAAGTTTTGGCAAGCCTACGCCCGGAAGGANGACCGATGTTGGTTCCAAGATGGGGAACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_533#0 CCAGATCGCGCACGAGGTGAGGATCCAGTTCGGAGGACGCAATCATTCCGCAGCGTGGTG 60 consensus_533#1 ------------------------------------------------------------ consensus_533#0 AGGAGCTGCTGAAGCAACCGAACGTGACCAACGTGCCGCTGATTCACGGTGTCACCAGTG 120 consensus_533#1 ------------------------------------------------------------ consensus_533#0 GGGAGGGTTTGGTGTTTTATGGGCTGCTGCAGCAGCGGTTTGACGAGGTTACGACCAATC 180 consensus_533#1 ------------------------------------------------------------ consensus_533#0 TGGCCAGCCTGCTGCCGCTCGATCTGGGCATACCGCGTGACTTTGCGCCGGCCGTAATCG 240 consensus_533#1 ----------------------------AGAATCGCACGA------GGTNAACGTAATCG 26 * *** ** * ******** consensus_533#0 AGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGTATTGGGCCACC 300 consensus_533#1 AGGAGATACGTCAGTTCTACTTCCAGGACAAACCGATCGATCGGGATGGATTGGGCCACC 86 ************************************************ *********** consensus_533#0 TGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGC 360 consensus_533#1 TGCTCGATCTGGTGGGAGACGTTGGCTTTTACTTCCCGGTGTACGCAGCGGCGGAGCTGC 146 ************************************************************ consensus_533#0 ATTCCCGCTTCCAGCAGGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGC 420 consensus_533#1 ATTCCCGCTTCCAGCANGAGGCACCACTGTACTTCTATCGCTTCTCGTACGAGAGCGAGC 206 **************** ******************************************* consensus_533#0 TGAACCAGCTGCGCAAGCAG-TTCAGCGTACCGGACGGTACACCGGGAGCGGCCCATGCC 479 consensus_533#1 TGAACCAGCTGCGCAAGCAGGTTCAGCGTACCGGACGGTACACCGGGAGCGGGCCATGCC 266 ******************** ******************************* ******* consensus_533#0 GACGAGTTGTCCTATCTGTTCAAT--GGCAGTCAAATTACTGTCCCGGTTGAGGCC--GG 535 consensus_533#1 GACGAGTTGTCCTATCTGTTCAACTGGGCAGTCAAATTACTGTCCCGGTTGAGAGCACGG 326 *********************** *************************** * ** consensus_533#0 C-TCGGTGGCGGATCAGGGCCGCGACACTGCTCT-GCCGTCTGTGGA-CCAACTTT-GCC 591 consensus_533#1 CATCGGTGGCGGATCAGGGGCCGCACACTGCTCTTGCAGTCTGTGGAACCAACTTTTGCC 386 * ***************** * ********** ** ********* ******** *** consensus_533#0 AA-GTTTGGCCAGGCCTACGGCCGGAGGAGA---CGATGTTGGGCTTCCAGTGGG-ACCC 646 consensus_533#1 AAAGTTTTGGCAAGCCTACGCCCGGAAGGANGACCGATGTTGGTTCCAAGATGGGGAACC 446 ** **** * ** ******* ***** * ********* **** * ** consensus_533#0 GCGTGGCACCGACGCGTGCACGGGGAACCGTTCGTGCTGACGCGCCCTCGAAGCTGAACN 706 consensus_533#1 G----------------------------------------------------------- 447 * consensus_533#0 GAGCAGGGTGCAAGTGTGGAAGAAATCCGAATGCAGGAAGCNCGGGATTACCAGTNTTTT 766 consensus_533#1 ------------------------------------------------------------ consensus_533#0 TGGAGGGTCCCGACTGGCCCGAAACGGCTTTACAATTCCCCAAATCCTGGGGTTGGGCCG 826 consensus_533#1 ------------------------------------------------------------ consensus_533#0 TATGAGAGGGCGGGGACGGAAGTTNCTCCAATTGTCGCATAATCTTCGTTCAATNNAGAG 886 consensus_533#1 ------------------------------------------------------------ consensus_533#0 CGNTTAGAAANATTCCGTTAACACTTTTCAGGGCCAAACNGGGGGTACNCTGGTAGCANN 946 consensus_533#1 ------------------------------------------------------------ consensus_533#0 ACACGAAC 954 consensus_533#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||