These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 894 fasta sequence [CCGCCCACGCGTCCGGTAAACTGAGCGAAGGTTTGCCGGAAAAGTTGCAGAAAAAGGCAGATTTTAATC-GCCCCACCATGG-GTGGGGGGGTCCCGGGAGGATACCATAGCCCCAGC-GGCACCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAACCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGGCGTACCGGGGCAAGGCAACCACGACATGGGGCTCAATCCGAGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAAGGAATGCAACCTAACCCTCAGCAGGTCGCGACAAACCAGCATCAGCCCGGTGCGAATCAAATGGTCGGTTTTTTTCCAACGCACCAAGCCGCCCAACCATCCCCCCAGAGGGGCATGCAGCAACAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAAAGCAGCAATGTCGGACCCGGCAACCCGATGAACAACCCCCAGTCACAGAACCAATCCGTCCCGCCGAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGCTCTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTGTGAGCCGCTTCCAGGAGGTGTTCGGCATACTGCGCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCAGCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCACGATCCGGCTGCTGTTCAAGCGGCTGCGGCTGCTGTACGACAAGTGCAACAACAACTGCCAGCAGGGCATGGAGTACACGCACGTGGAGAGCTTGATACCGCTCAAGGGCGA] [+] EMBL BM597199 [CCGCCCACGCGTCCGGTAAACTGAGCGAAGGTTTGCCGGAAAAGTTGCAGAAAAAGGCAGATTTTAATC GCCCCACCATGGAGTGGGGGGGTCCCGGGAGGATACCATAGCCCCAGCGGGCACCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAACCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGGCGTACCGGGGCAAGGCAACCACGACATG ] [+] EMBL CNS08QLZ [ AGGCAGATTTTAATCTGCCCCACCATGG CTGGCCAGTTCCCGGGAGGATACCAGAGCCCCAGC GGCACCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAACCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGGCGTACCGGGGCAAGGCAACCAGGACATGGGGCTCAATCCGAGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAAGGAATGCAACCTAACCCTCAGCAGGTCGCGACAAACCAGCATCAGCCCGGTGCGAATCAAATGGTCGGTTTTTTTCCAACGCACCAAGCCGCCCAACCATCCCCCCAGAGGGGCATGCAGCAACAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAAAGCAGCAATGTCGGACCCGGCAACCCGATGAACAACCCCCAGTCACAGAACCAATCCGTCCCGCCGAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGCTCTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTGTGAGCCGCTTCCAGGAGGTGTTCGGCATACTGCGCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCAGCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCACGATCCGGCTGCTGTTCAAGCGGCTGCGGCTGCTGTACGACAAGTGCAACAACAACTGCCAGCAGGGCATGGAGTACACGCACGTGGAGAGCTTGATACCGCTCAAGGGCGA] [-] EMBL CNS08QM0 [ aTCCAACGCACCAAGCCGCCCAACCATCCCCCCAAATGGGCATGCAGCAACAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAAAGCAGCAATTTCGGACCCGGCAACCCGATGAACAACCCCCAGTCACAGAACCAATCCGTCCCGCCGAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGTTCTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTTTGAGCCGCTTCCAGGAGGTGTTCGGCATACTGCGCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCAGCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCCCGATCCGGCTGCTGTTCAAGCGGCTGCGGCTGCTGTCCGACA ] consensusID : consensus_5334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CAAGAATTGCCCCGAGGTTNACATTGTGTGCTCAATCCTGGGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAATGGAATGCAACCTAACCCTCAGCAGTGTTGCTGACAAACCAGCATCAGCCCTGTGTGCTGAATCAAATGTGTCTGTGACATGAATCCAACTGCACCAATGCCTGCCCAACCATCCCCCCATGATGTGGCAATGCATGCAACAACAACAACATGCATGCATGCAACATGCAACAACAACATGCATGCATGCATGCAACAACAAATGCAGCAATGTCTGTGACCCTGTGCAACCCTGATGAACAACCCCCAGTCACATGAACCAATCCTGTCCCTGCCTGAATCAGCCCTGTGCTGCATGTNGACTGTGCTGTGTACATGCATGCATGCAGAATGTGCCTGAATTTAACCCTTGGCTCTCTCGCTGTGCCCGCCAATCNGGTGCAGTGAAACTGGGTAACATGTGACCATTTTGGTTGATGCCCCTGCGGTTTCACCATGGTGCATAGTCGGTTTGTNTACCTGTGCGCAATTACTTGCGTTAGCTCTCAATCCATAGCGGCCCCTGGAAACTGGGACCGAAC] [+] EMBL AL931268 [CAAGAATTGCCCCGAGGTTNACATTGTGTGCTCAATCCTGGGCATGATGCAGCAAAACCAACAGCAGCAGCAACCCGGCCAATGGAATGCAACCTAACCCTCAGCAGTGTTGCTGACAAACCAGCATCAGCCCTGTGTGCTGAATCAAATGTGTCTGTGACATGAATCCAACTGCACCAATGCCTGCCCAACCATCCCCCCATGATGTGGCAATGCATGCAACAACAACAACATGCATGCATGCAACATGCAACAACAACATGCATGCATGCATGCAACAACAAATGCAGCAATGTCTGTGACCCTGTGCAACCCTGATGAACAACCCCCAGTCACATGAACCAATCCTGTCCCTGCCTGAATCAGCCCTGTGCTGCATGTNGACTGTGCTGTGTACATGCATGCATGCAGAATGTGCCTGAATTTAACCCTTGGCTCTCTCGCTGTGCCCGCCAATCNGGTGCAGTGAAACTGGGTAACATGTGACCATTTTGGTTGATGCCCCTGCGGTTTCACCATGGTGCATAGTCGGTTTGTNTACCTGTGCGCAATTACTTGCGTTAGCTCTCAATCCATAGCGGCCCCTGGAAACTGGGACCGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5334#0 CCGCCCACGCGTCCGGTAAACTGAGCGAAGGTTTGCCGGAAAAGTTGCAGAAAAAGGCAG 60 consensus_5334#1 ------------------------------------------------------------ consensus_5334#0 ATTTTAATCGCCCCACCATGGGTGGGGGGGTCCCGGGAGGATACCATAGCCCCAGCGGCA 120 consensus_5334#1 ------------------------------------------------------------ consensus_5334#0 CCGGGGCAACTACAACAGTCCCATCATCCAACAGCACCTAAATCAAATGAACGTGCCAAA 180 consensus_5334#1 ------------------------------------------------------------ consensus_5334#0 CCAAATGGGCATGATGGGATTCAATCAAAACAGCATGATGAACAGCCCACAGATGCAGGG 240 consensus_5334#1 -------------------------------------------------------CAAGA 5 ** * consensus_5334#0 CGTACCGGGGCAAGGCAACCACGACATGGGGCTCAATCC-GAGCATGATGCAGCAAAACC 299 consensus_5334#1 ATTGCCC---CGAGGTTNACATTGTGTG---CTCAATCCTGGGCATGATGCAGCAAAACC 59 * ** * *** ** ** ******** * ****************** consensus_5334#0 AACAGCAGCAGCAACCCGGCCAA-GGAATGCAACCTAACCCTCAGCAG-GTCGC-GACAA 356 consensus_5334#1 AACAGCAGCAGCAACCCGGCCAATGGAATGCAACCTAACCCTCAGCAGTGTTGCTGACAA 119 *********************** ************************ ** ** ***** consensus_5334#0 ACCAGCATCAGCCCGGTGCG---AATCAAATG-GTCGGTTTTTT---TCCAAC-GCACCA 408 consensus_5334#1 ACCAGCATCAGCCCTGTGTGCTGAATCAAATGTGTCTGTGACATGAATCCAACTGCACCA 179 ************** *** * ********* *** ** * ****** ****** consensus_5334#0 AG--CCGCCCAACCATCCCCCCAGAG---GGGCATGCA-GCAACAACAACAACA-GCA-G 460 consensus_5334#1 ATGCCTGCCCAACCATCCCCCCATGATGTGGCAATGCATGCAACAACAACAACATGCATG 239 * * ***************** ** ***** *************** *** * consensus_5334#0 CA-GCAACA-GCAACAACAACA-GCA-GCA-GCA-GCAACAACAAA-GCAGCAATGTCGG 513 consensus_5334#1 CATGCAACATGCAACAACAACATGCATGCATGCATGCAACAACAAATGCAGCAATGTCTG 299 ** ****** ************ *** *** *** *********** *********** * consensus_5334#0 --ACCCGG--CAACCC-GATGAACAACCCCCAGTCACA-GAACCAATCC-GTCCCG--CC 564 consensus_5334#1 TGACCCTGTGCAACCCTGATGAACAACCCCCAGTCACATGAACCAATCCTGTCCCTGCCT 359 **** * ****** ********************* ********** ***** * consensus_5334#0 GAATCAGCCCGGCGCAGGGACGGCGGTACAGCAGCAGCAGAAGGCCGAATTTAACCTGCT 624 consensus_5334#1 GAATCAGCCCTGTGCTGC-ATGTNGACTGTGCTGT-GTACATGCATGCATGCAGAATGTG 417 ********** * ** * * * * ** * * * * * * ** * ** consensus_5334#0 CTCGCTGTGCCGCATCGGGCAGGAAACGGTACAGGACACTGTGAGCCGCTTCCAGGAGGT 684 consensus_5334#1 CCTGAATTTAACCCTTGGCTCTCTCGCTGTGCCCGCCAATCNGGTGCAGT----GAAACT 473 * * * * * ** * ** * * ** * * * * * * * consensus_5334#0 GTTCGGCATACTGC-GCTCCATTCAGCCCCCGAACGGGACGAACCAGGGCCAGCTGTCCA 743 consensus_5334#1 GGGTAACATGTGACCATTTTGGTTGATGCCCCTGCGGTTTCACCATGGTGCA--TAGTCG 531 * *** * * * *** *** * * ** ** * * consensus_5334#0 GCAACGACAAGAAGGCGAAGGTGCAGGAACAGTTCCGCACGATCCGGCTGCTGTTCAAGC 803 consensus_5334#1 GTTTGTNTACCTGTGCGCAATTACTTGCGTTAGCTCTCAATCCATAGCGGC--CCCTGGA 589 * * *** * * * * * ** ** ** * * consensus_5334#0 GGCTGCGGCTGCTGTACGACAAGTGCAACAACAACTGCCAGCAGGGCATGGAGTACACGC 863 consensus_5334#1 AACTGGGACCGAAC---------------------------------------------- 603 *** * * * consensus_5334#0 ACGTGGAGAGCTTGATACCGCTCAAGGGCGA 894 consensus_5334#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||