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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1149 fasta sequence
[TATTCGAAACAACTAGCCAAGCTCTACTTTTACATACATTGACACACAACTATATACACAGTAGCAATATGTGCCCACGGTGGCAGTAGAACACAGCAGCAGCGAAAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAACAAACACACGCACACACATAAAACAAGGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCAAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCCGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGTTAAGGAACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAACCTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAAAACAATTAGCGTATTTAGAAACATTTAGTAAACGTTACGTGTTAAGTAATAATAGAGCGATAGAAGGAAGAATAGAAGAAGGAGAGTTGGATAAGGAGGTGGTAGAATTAGTGAAGTGATTTGAAAAAGAAAATGAAATTTCTCCTCCCCGCTACAGCATTGTAACAACAACAAGCGGCAAAAAACAGGAGAAAGCCTGGCAAACACGATTTTCTACTAAGCGGAATATTTATGCGTAAACAAGAAAAGGCTACAAGCATATAGAACATATACATATATACATACAGGCACACTTAAAACTTACAGTACATATATACAACAACTATGTATGGATATACACAAGACAGAGGACAGCAGCGGGAGACGACAAAAAAGGCGCATCTAGCTCTTGAGTAGTTTGCAGCATTTAAAATAGCGATTAAAGCAAGCAGAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACAT]
[+] EMBL BX613630 [TATTCGAAACAACTAGCCAAGCTCTACTTTTACATACATTGACACACAACTATATACACAGTAGCAATATGTGCCCACGGTGGCAGTAGAACACAGCAGCAGCGAAAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAACAAACACACGCACACACATAAAACAAGGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCAAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCCGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGTTAAGGAACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAACCTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAAAACAATTAGCGTATTTAGAAACATTTAGTAAACGTTACGTGTTAAGTAATAATAGAGCGAT ]
[+] EMBL BM630887 [ CCGCTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGGTAAGGAACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAAAACAATTAGCGTATTTAGAAACATTTAGTAAACGTTACGTGTTAAGTAATCATAGAGCGATAGAAGGAAGAATAGAAGAAGGAGAGTTGGATAAGGAGGTGGTAGAATTAGTGAAGTGATTTGAAAAAGAAAATGAAATTTCTCCTCCCCGCTACAGCATTGTAACAACAACAAGCGGCAAAAAACAGGAGAAAGCCTGGCAAACACGATTTTCTACTAAGCGGAATATTTATGCGTAAACAAGAAAAGGCTACAAGCATATAGAACATATACATATATACATACAGGCACACTTAAAACTTACAGTACATATATACAACAACTATGTATGGATATACACAAGACAGAGGACAGCAGCGGGAGACGACAAAAAAGGCGCATCTAGCTCTTGAGTAGTTTGCAGCATTTAAAATAGCGATTAAAGCAAGCAGAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACAT]
consensusID : consensus_5338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[CAGGCAAGAATCGCCCCGAGGTAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACAAAAAAGCAAACACACGTACACACATAAAACAAAGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCTAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCTGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTTGGTAAGGAACGTGAGTGAACCAGTCACGTAAAACAAAAAATGGANAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTNNCAGTAATGGTAAGCAAAACAATTAGCGTCATCAGAAACATTNAGTAAACGTTNACGAGTTAAGTACATCNATAGAGCGCATAGCACAGGACCGACATCAGANAGAAGCGCANGCAGTNCGGCCATCAACGGCAAGCGTNGGTNACGCAATTCAGGTCGNACAGTCGGAANTCTACGCAAACACCACGCAANCANTCGCACACATTTTCTCCCTACCCCCGCTACCAGCNATTCG]
[+] EMBL AL931332 [CAGGCAAGAATCGCCCCGAGGTAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACAAAAAAGCAAACACACGTACACACATAAAACAAAGCAACAAATTGCAAGAAACAAGTAATGAATAATCGAATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATATATATAAATTATACAGCAATGTAATCATCTCATGAATCATCAAAAAATCATCAAACGCAGTAATTAAACTAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCTAAGGGGCGCCCCAGCTCCTTGGCGGAGACTAAGATCGACTCCGCGCCTCCTGGCTGGCGGGAATGGGGCGCCCAATTTTACACCACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTTGGTAAGGAACGTGAGTGAACCAGTCACGTAAAACAAAAAATGGANAGGAAGCAAAACCCCTGGCAAACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTNNCAGTAATGGTAAGCAAAACAATTAGCGTCATCAGAAACATTNAGTAAACGTTNACGAGTTAAGTACATCNATAGAGCGCATAGCACAGGACCGACATCAGANAGAAGCGCANGCAGTNCGGCCATCAACGGCAAGCGTNGGTNACGCAATTCAGGTCGNACAGTCGGAANTCTACGCAAACACCACGCAANCANTCGCACACATTTTCTCCCTACCCCCGCTACCAGCNATTCG]
consensusID : consensus_5338#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CCGAAGGGACGCTGCAGTGGTGCCGGTGATCACACGCACACTCACACACACACACACGCCCACCCATACACCTGATGCCTTCTTTAAACGATGATGCTTCTACCGATTTGCCAACTTTTTGAAGACAACAGCTCTCCCGGAGAGGGTGGGGAAGGGCACTGCAAAACTGCATACAACTTAGTAAAACTCACAGTCACTGGTAGTGCATCTGGTAGTGTGAAGGATGCCCCAGGCGGTAATAGTAGAGCTTGGCTAGTTGTTTCGAATACAAGAACACACTCACAAACGTACACAAAGCATCACTCACACATACATAGACACACAACTATATACACAATAGCAATATGTGCCCACGGTGGCAGTAGAACGCAGCAGCAGCGACAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACATTGTAAGCAAACCAT]
[+] EMBL BM638084 [CCGAAGGGACGCTGCAGTGGTGCCGGTGATCACACGCACACTCACACACACACACACGCCCACCCATACACCTGATGCCTTCTTTAAACGATGATGCTTCTACCGATTTGCCAACTTTTTGAAGACAACAGCTCTCCCGGAGAGGGTGGGGAAGGGCACTGCAAAACTGCATACAACTTAGTAAAACTCACAGTCACTGGTAGTGCATCTGGTAGTGTGAAGGATGCCCCAGGCGGTAATAGTAGAGCTTGGCTAGTTGTTTCGAATACAAGAACACACTCACAAACGTACACAAAGCATCACTCACACATACATAGACACACAACTATATACACAATAGCAATATGTGCCCACGGTGGCAGTAGAACGCAGCAGCAGCGACAGGATAATATTATACAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTTAATTGTTTCCTATAAAACACATTGTAAGCAAACCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5338#0 TATTCGAAACAACTAGCCAAGCTCTACTTTTACATACATTGACACACAACTATATACACA 60
consensus_5338#1 ------------------------------------------------------------
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 GTAGCAATATGTGCCCACGGTGGCAGTAGAACACAGCAGCAGCGAAAGGATAATATTATA 120
consensus_5338#1 -----------------------------CAGGCAAGAATCGCCCCGAGGTAATCTTC-- 29
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 CAGCAAAGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAAACAA 180
consensus_5338#1 -------GTATAATGAATGTTTAGTTCTTAAAAAAACAAAACAAAAC---AAAAAAGCAA 79
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 ACACACGCACACACATAAAACAAGGCAACAAATTGCAAGAAACAAGTAATGAATAATCGA 240
consensus_5338#1 ACACACGTACACACATAAAACAAAGCAACAAATTGCAAGAAACAAGTAATGAATAATCGA 139
consensus_5338#2 --------------------------------------------------------CCGA 4
***
consensus_5338#0 ATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATA------AATT 294
consensus_5338#1 ATAAGAGTTATATATACACAAACACATATATATACAAATATATATATATATATATAAATT 199
consensus_5338#2 AGGGACGCTGCAGTGGTGCCGGTGATCACACGCACACTCACACACACACA---------- 54
* * * * * * * *** * * * * * *
consensus_5338#0 ATACAGCAATGTAATCATCTCATGAATCATCAAAAAAATCATCAAACGCAGTAATTAAAC 354
consensus_5338#1 ATACAGCAATGTAATCATCTCATGAATCATCAAAAAA-TCATCAAACGCAGTAATTAAAC 258
consensus_5338#2 -CACGCCCACCCATACACCTGATGCCTTCTTTAAACGATGAT-GCTTCTACCGATTTG-C 111
** * * * ** ** *** * * *** * ** * *** *
consensus_5338#0 TAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCAAAGGGGCGCCCCAGCTCCTTGGC 414
consensus_5338#1 TAGCAGCGTAAGTGCAAAACCCCTTTTTGAAGGCGCTAAGGGGCGCCCCAGCTCCTTGGC 318
consensus_5338#2 CAACTTTTTGAAGACAACAGCTCTCCCGGAGAGGGTGGGGAAGGGCACTGCAAAACTGCA 171
* * * * *** * * ** ** * * * * ** * **
consensus_5338#0 GGAGACTAAGATCGACTCCGCGCCTCCTGGCCGGCGGGAATGGGGCGCCCAATTTTACAC 474
consensus_5338#1 GGAGACTAAGATCGACTCCGCGCCTCCTGGCTGGCGGGAATGGGGCGCCCAATTTTACAC 378
consensus_5338#2 TACAACTTAG-TAAAACTCACAGTCACTGG-TAGTGCATCTGGTAGTGTGAAGGATGCCC 229
*** ** * * * * **** * * *** ** * * *
consensus_5338#0 CACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTCGTTAAGGA 534
consensus_5338#1 CACTTGGATCCGAAAACTAAAATACAAGATATAACTACTACTACTACTAGTTGGTAAGGA 438
consensus_5338#2 CAGGCGGT----AATAGTAGAGCTTGGCTAGTTGTTTCGAATACAAGAACACACTCACAA 285
** ** ** * ** * * * * * *** * * * * *
consensus_5338#0 ACGTGAATGAACCAGTCACGTAAAACAAAAAATGGAA-GGAAGCAAAACCCC--TGGCAA 591
consensus_5338#1 ACGTGAGTGAACCAGTCACGTAAAACAAAAAATGGANAGGAAGCAAAACCCC--TGGCAA 496
consensus_5338#2 ACGTACACAAAGCA-TCAC-TCACACATACATAGACACACAACTATATACACAATAGCAA 343
**** ** ** **** * * *** * * * ** * * * * * ****
consensus_5338#0 ACAGCAAAACAAAAAACCGAAACCTGTAACGAGTAATGACGTTTTAGTAATGGTAAGCAA 651
consensus_5338#1 ACAGCAAAACAAAAAACCGAAAACTGTAACGAGTAATGACGTNNCAGTAATGGTAAGCAA 556
consensus_5338#2 TATGTGCCCACGGTGGCAGTAGAACGCAGC-AGCAGCGACAGGATAATATTATACAGCAA 402
* * * * * * * ** * *** * ** * *****
consensus_5338#0 AACAATTAGCGTATTTAGAAA-CATTTAGTAAACGTTA-CGTGTTAAGTAA--TAATAGA 707
consensus_5338#1 AACAATTAGCGTCATCAGAAA-CATTNAGTAAACGTTNACGAGTTAAGTACATCNATAGA 615
consensus_5338#2 AGCGTAAAATGCATTAAATCTTCGTATAATGAATGTTTAGTTCTTAAAAA----AACAAA 458
* * * * * * * * * * ** *** **** * * * *
consensus_5338#0 GCGATAGAAGGAAGAATAGAAGAAGGAGAGTTGGATAAGGAGGTGGTAGAATTAGTGAAG 767
consensus_5338#1 GCG-CATAGCACAGGACCGACATCAGANAGAAGCGCANGCAGTNCG-GCCATCAACGGCA 673
consensus_5338#2 ACAAAACACAGAAAGACACACA-CACACAAAGAAATGTTTAATT---GTTTCCTATAAAA 514
* * * * * * * * *
consensus_5338#0 TGATTTGAAAAAGAAAATGAAATTTCTCCTCCCCGCTACAGCATTGTAACAACAACAAGC 827
consensus_5338#1 AGCGTNGGTNACGCAATTCAGGT-----CGNACAGTCGGAANTCTACGCAAACACCACGC 728
consensus_5338#2 CACATTG--TAAGCAAACCAT--------------------------------------- 533
* * * * ** *
consensus_5338#0 GGCAAAAAACAGGAGAAAGCCTGGCAAACACGATTTTCTACTAAGCGGAATATTTATGCG 887
consensus_5338#1 AANCANTCGCAC-ACATTTTCTCCCTACCCCCGCTACCAGCNATTCG------------- 774
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 TAAACAAGAAAAGGCTACAAGCATATAGAACATATACATATATACATACAGGCACACTTA 947
consensus_5338#1 ------------------------------------------------------------
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 AAACTTACAGTACATATATACAACAACTATGTATGGATATACACAAGACAGAGGACAGCA 1007
consensus_5338#1 ------------------------------------------------------------
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 GCGGGAGACGACAAAAAAGGCGCATCTAGCTCTTGAGTAGTTTGCAGCATTTAAAATAGC 1067
consensus_5338#1 ------------------------------------------------------------
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 GATTAAAGCAAGCAGAACAAAACAAAACACAGAAAGACACACACACACAAAGAAATGTTT 1127
consensus_5338#1 ------------------------------------------------------------
consensus_5338#2 ------------------------------------------------------------
consensus_5338#0 AATTGTTTCCTATAAAACACAT 1149
consensus_5338#1 ----------------------
consensus_5338#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||