These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 926 fasta sequence [CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG] [+] EMBL AL931425 [CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG] consensusID : consensus_5340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence [CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGACTGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGTACAAGCCGCCAGGTGCGAAGG] [+] EMBL BX611105 [CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCATGCCCTTGTAGCGATCCATGCCGGGGATGGATCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCCTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACGAGTTTGACTTCACCCAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAAATACTTCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAGGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAA ] [+] EMBL BM634290 [ ccgCGGGTACTTCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTTTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGACTGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGTACAAGCCGCCAGGTGCGAAGG] [+] EMBL BM611608 [ cCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5340#0 ------------------------------------------------------------ consensus_5340#1 CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCA 60 consensus_5340#0 ------------------------------------------------------------ consensus_5340#1 TGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGA 120 consensus_5340#0 ------------------------------------------------------------ consensus_5340#1 GATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCC 180 consensus_5340#0 -------------------------CAGAATTCCCTGANGTTTCC-AANGCCATCGTCAC 34 consensus_5340#1 GCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCAC 240 ** * *** * ** ** *********** consensus_5340#0 GGTGTGCAGCAT-ANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAA 93 consensus_5340#1 CGGTGGCAGCATGACCAGTGAGG--CCGTGTGCTATGCC-GTCAAGAAAGC-GTGTGAGA 296 * ******* * ******* * ************ *********** ****** * consensus_5340#0 TACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTG 153 consensus_5340#1 TTCTGCTCGAAC-GCATCAAACC-GGTTCG--CGATGC-GCATAAG-GAC-GCACC-GTG 348 * ********** ********** ***** ***** ******* *** ***** *** consensus_5340#0 GGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAG 213 consensus_5340#1 GGAAACC-GTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGC-GCTACCTATCAG 406 ******* *************************************** ************ consensus_5340#0 TACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTG 273 consensus_5340#1 TACC-GTGC-GACCGA--GCTGAAGCCTTACATCATCTGGG--GCTTAAGCT-GTGCC-G 458 **** **** **** ********************** ********* ***** * consensus_5340#0 AGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACT 333 consensus_5340#1 AG---GTGGAGGTG-GATGTGCTCACGGGCAATGTGCAGCT-GCGCCGTGTCGACATACT 513 ** *** *** ************************** ****************** consensus_5340#0 TGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGT 393 consensus_5340#1 GGAA--GATACT-GGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATT---GAGGG 567 * * ****** *************************************** * ** consensus_5340#0 TGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGC 453 consensus_5340#1 TGCGTTCATAATGGG--CGTCGGGTACT-GGCTGACT--GAAGCGTTGGTATACAAT-GC 621 ****** ** ** ** ********** ******** ***************** ** consensus_5340#0 TTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAG 513 consensus_5340#1 TGAA--GACG-GTGCTCT-GCTAAC-GAACC-GTACCTGGCAC-GTACAAG--CCGCCAG 672 * * **** ******* ****** ***** ****** * ** ****** * ***** consensus_5340#0 GTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCC 573 consensus_5340#1 GTGCGAAGG--------------------------------------------------- 681 ******** consensus_5340#0 AATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTT 633 consensus_5340#1 ------------------------------------------------------------ consensus_5340#0 GAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGC 693 consensus_5340#1 ------------------------------------------------------------ consensus_5340#0 ACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTAC 753 consensus_5340#1 ------------------------------------------------------------ consensus_5340#0 CTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAA 813 consensus_5340#1 ------------------------------------------------------------ consensus_5340#0 CAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCA 873 consensus_5340#1 ------------------------------------------------------------ consensus_5340#0 CTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG 926 consensus_5340#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||