These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence [CAAGAATCGGCACGAGGACAGTTTGGACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCTGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGAGGCTGCCCGGTTGCTGCCGTTGCCCCCGAAGGGAGACCGTCGTCGTTGCCCAGGCCCGCGGTTTGCTGCCGTCGTTGCCAGAAGGAAGCTCGCGTATGTCGCTGCTAAACCCCCGGTTGCCCGTGCCAACCGAAAAGGCTTCCCGGTTTTGGCACCGGGACACAACAACCCCGTTCAAACCNAACAATTCGGCTTGAAACCGTTTCAAGCCTTTNCCCCGGGAAAACCCAATTAAAGACAGTTTTTCAACCCGGTGNACCTATTTGAAAA] [+] EMBL BX467588 [CAAGAATCGGCACGAGGACAGTTTGGACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCTGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGAGGCTGCCCGGTTGCTGCCGTTGCCCCCGAAGGGAGACCGTCGTCGTTGCCCAGGCCCGCGGTTTGCTGCCGTCGTTGCCAGAAGGAAGCTCGCGTATGTCGCTGCTAAACCCCCGGTTGCCCGTGCCAACCGAAAAGGCTTCCCGGTTTTGGCACCGGGACACAACAACCCCGTTCAAACCNAACAATTCGGCTTGAAACCGTTTCAAGCCTTTNCCCCGGGAAAACCCAATTAAAGACAGTTTTTCAACCCGGTGNACCTATTTGAAAA] consensusID : consensus_5341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence [ACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCGGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCCGGTTGCTGCCGTTGCCCCCGAGGAGACCGTCGTCGTTGCCCAGCCCGCGGTTGCTGCCGTCGTTGCCCAGAAGGAAGCTCGCTATGTCGCTGCTAACCCCGGTGCCGTGCACGAAGCTCCGCTTGCCGGACACACCGTCAACCAGCAGTCGCTGAACGTGCAG] [+] EMBL BX625061 [ACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCGGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCCGGTTGCTGCCGTTGCCCCCGAGGAGACCGTCGTCGTTGCCCAGCCCGCGGTTGCTGCCGTCGTTGCCCAGAAGGAAGCTCGCTATGTCGCTGCTAACCCCGGTGCCGTGCACGAAGCTCCGCTTGCCG ] [+] EMBL BX626740 [ GCATCCAGAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTACCCTTCGCACTCCGGTAGTTTACACCGGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTCGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTTGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCCGGTTGCTGCCGTTGCCCCCGANGAGACCGTCGTTGTTGCCCAGCCCGCGGTTGCTGCCGTCGTTGCCCAGAANGAAGCTCGCTATGTCGCTGCTAANCCCGGTGNCGTGCACGAAGCTCCGCTTGCCGGACACACCGTCAACCAGCAGTCGCTGAACGTGCAG] consensusID : consensus_5341#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [CTCGCCCGANGTANCNGTTTGGACGGCAGCATCCACAAAACATGCCAGCAATCATGAAAGTGCATCTGCAGCTGTAGTCATGATGACTCTGGCCATCTGCGGTGGAGGCTAACGTTTATTTGGCCTTTTCGCACTCCGGTAGTTTACACCTGTGTGCCTGAGAAAACAGTCTGTCCAGCAGAACGTAGCTCCGAAATACTACACTGTTCAGCGTGGCTTACAATTGCCCCCGTAGTGACCGCTGTACACCGTCCCAGAAACTTACGTCCAAACAGAAGTACTATTCGGGCCCTGGCTTGTGACATTACGCTTGCTTGCAGCCTGCNCTGTCACACTACTTGCGTCCCGAAGTGCCGACCTACTGTTGGCGTCGAACGTTTGCGCCCGGCTGTCCGCCTAACTCGAACCCAGTTTGTCACTTGCCTACACGGTNGCCTGGAAAAGACCGNNTGTTGCAGCAGAACTGTTGNCCCTGAAGTACGTTAGCTACACGGCCCTGTGCGTGTCTTACGTTGCTCCTGTGCTGTCTCCTACTCCGNNTCCGGCTGTCACCTACACCTGCACCTGCTCCTGGTGACCAAGTATTGAATCNGGTCTGCACCCTGTCGCTTACCCTGGCACCGATCTGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCTGGTTGCTGCCGTTGCCCCCGAGGAGACCTGTCTGTCGTTGCCCAGCCTGCTGGTTGCTGCCTGTCGTTGCCCATGA] [+] EMBL AL931440 [CTCGCCCGANGTANCNGTTTGGACGGCAGCATCCACAAAACATGCCAGCAATCATGAAAGTGCATCTGCAGCTGTAGTCATGATGACTCTGGCCATCTGCGGTGGAGGCTAACGTTTATTTGGCCTTTTCGCACTCCGGTAGTTTACACCTGTGTGCCTGAGAAAACAGTCTGTCCAGCAGAACGTAGCTCCGAAATACTACACTGTTCAGCGTGGCTTACAATTGCCCCCGTAGTGACCGCTGTACACCGTCCCAGAAACTTACGTCCAAACAGAAGTACTATTCGGGCCCTGGCTTGTGACATTACGCTTGCTTGCAGCCTGCNCTGTCACACTACTTGCGTCCCGAAGTGCCGACCTACTGTTGGCGTCGAACGTTTGCGCCCGGCTGTCCGCCTAACTCGAACCCAGTTTGTCACTTGCCTACACGGTNGCCTGGAAAAGACCGNNTGTTGCAGCAGAACTGTTGNCCCTGAAGTACGTTAGCTACACGGCCCTGTGCGTGTCTTACGTTGCTCCTGTGCTGTCTCCTACTCCGNNTCCGGCTGTCACCTACACCTGCACCTGCTCCTGGTGACCAAGTATTGAATCNGGTCTGCACCCTGTCGCTTACCCTGGCACCGATCTGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCTGGTTGCTGCCGTTGCCCCCGAGGAGACCTGTCTGTCGTTGCCCAGCCTGCTGGTTGCTGCCTGTCGTTGCCCATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5341#0 CAAGAATCGGCACGAGGACAGTTTGGACGGCAGCATCCACAAAACAAGCCCAGCAATCAT 60 consensus_5341#1 --------------------------ACGGCAGCATCCACAAAACAAGCCCAGCAATCAT 34 consensus_5341#2 ----CTCGCCCGANGTANCNGTTTGGACGGCAGCATCCACAAAACATGCC-AGCAATCAT 55 ******************** *** ********* consensus_5341#0 GAA-GTGCATC-GCAGCTGTAGTCATGATGACTCTGGCCATC-GCGGCGGAGGCTAACGT 117 consensus_5341#1 GAA-GTGCATC-GCAGCTGTAGTCATGATGACTCTGGCCATC-GCGGCGGAGGCTAACGT 91 consensus_5341#2 GAAAGTGCATCTGCAGCTGTAGTCATGATGACTCTGGCCATCTGCGGTGGAGGCTAACGT 115 *** ******* ****************************** **** ************ consensus_5341#0 TA--TTGCCCTT--CGCACTCCGGTAGTTTACACCTGTG---CCGAGAAAACAGTC-GTC 169 consensus_5341#1 TA--TTGCCCTT--CGCACTCCGGTAGTTTACACCGGTG---CCGAGAAAACAGTC-GTC 143 consensus_5341#2 TTATTTGGCCTTTTCGCACTCCGGTAGTTTACACCTGTGTGCCTGAGAAAACAGTCTGTC 175 * *** **** ********************* *** * ************ *** consensus_5341#0 CAGCAGAACGTAGCTCCGAAATACTACAC-GTCCAGCGTGGCTTACAAT-GCCCCCGTAG 227 consensus_5341#1 CAGCAGAACGTAGCTCCGAAATACTACAC-GTCCAGCGTGGCTTACAAT-GCCCCCGTAG 201 consensus_5341#2 CAGCAGAACGTAGCTCCGAAATACTACACTGTTCAGCGTGGCTTACAATTGCCCCCGTAG 235 ***************************** ** **************** ********** consensus_5341#0 TGACCGC-GTACACCGTCCCAGAAACTTACGTCCAA-CAGAAGTACTATTCGGGCCCGG- 284 consensus_5341#1 TGACCGC-GTACACCGTCCCAGAAACTTACGTCCAA-CAGAAGTACTATTCGGGCCCGG- 258 consensus_5341#2 TGACCGCTGTACACCGTCCCAGAAACTTACGTCCAAACAGAAGTACTATTCGGGCCCTGG 295 ******* **************************** ******************** * consensus_5341#0 -CTGTGACAT-ACGCTG--CTGCGCCTGCCGTCACCAC-CTACTC-CGTCCCGAAGG--C 336 consensus_5341#1 -CTGTGACAT-ACGCTG--CTGCGCCTGCCGTCACCAC-CTACTC-CGTCCCGAAGG--C 310 consensus_5341#2 CTTGTGACATTACGCTTGCTTGCAGCCTGCNCTGTCACACTACTTGCGTCCCGAAGTGCC 355 ******** ***** *** * * *** ***** ********** * consensus_5341#0 GACCTACG--TGGCGTCGAACGTT-GC-CCCGGCTGTC-GCCTA-CTCGACCCCAGTT-G 389 consensus_5341#1 GACCTACG--TGGCGTCGAACGTT-GC-CCCGGCTGTC-GCCTA-CTCGACCCCAGTT-G 363 consensus_5341#2 GACCTACTGTTGGCGTCGAACGTTTGCGCCCGGCTGTCCGCCTAACTCGAACCCAGTTTG 415 ******* ************** ** ********** ***** ***** ******* * consensus_5341#0 TCACT-GCCTACACGGTG--CCGGAAAAGACCGTTG--TGCAGCAGAAC-GTTGCCCC-G 442 consensus_5341#1 TCACT-GCCTACACGGTG--CCGGAAAAGACCGTTG--TGCAGCAGAAC-GTTGCCCC-G 416 consensus_5341#2 TCACTTGCCTACACGGTNGCCTGGAAAAGACCGNNTGTTGCAGCAGAACTGTTGNCCCTG 475 ***** *********** * *********** *********** **** *** * consensus_5341#0 AAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGG--CTGTCTCCTACT 500 consensus_5341#1 AAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGG--CTGTCTCCTACT 474 consensus_5341#2 AAGTACGTTAGCTACACGGCCCTGTGCGTGTCTTACGTTGCTCCTGTGCTGTCTCCTACT 535 ********************** * ****************** * ************ consensus_5341#0 CCGCT-CCGGCCGTCACCTACACCGCCACC-GCTCC-GGTGACCAAGTAT-GAATCGG-- 554 consensus_5341#1 CCGCT-CCGGCCGTCACCTACACCGCCACC-GCTCC-GGTGACCAAGTAT-GAATCGG-- 528 consensus_5341#2 CCGNNTCCGGCTGTCACCTACACCTGCACCTGCTCCTGGTGACCAAGTATTGAATCNGGT 595 *** ***** ************ **** ***** ************* ***** * consensus_5341#0 TCGCACCC-GTCGCTTACCC-GGCACCGATC-GCTTACTCATCCGACTCGGACGTAGTG- 610 consensus_5341#1 TCGCACCC-GTCGCTTACCC-GGCACCGATC-GCTTACTCATCCGACTCGGACGTAGTGG 585 consensus_5341#2 CTGCACCCTGTCGCTTACCCTGGCACCGATCTGCTTACTCATCCGACTCGGACGTAGTGG 655 ****** *********** ********** *************************** consensus_5341#0 AGGCTGCCC-GGTTGCTGCCGTTGCCCCCGAAGGGAGACC-GTC-GTCGTTGCCCAGGCC 667 consensus_5341#1 AGGCTGCCCCGGTTGCTGCCGTTGCCCCCGA--GGAGACC-GTC-GTCGTTGCCCAG-CC 640 consensus_5341#2 AGGCTGCCCTGGTTGCTGCCGTTGCCCCCGA--GGAGACCTGTCTGTCGTTGCCCAG-CC 712 ********* ********************* ******* *** ************ ** consensus_5341#0 CGCGGTTTGCTGCC-GTCGTTGCC-AGAAGGAAGCTCGCGTATGTCGCTGCTAAACCCCC 725 consensus_5341#1 CGCGGTT-GCTGCC-GTCGTTGCCCAGAAGGAAGCTCGC-TATGTCGCTGCTAA--CCCC 695 consensus_5341#2 TGCTGGTTGCTGCCTGTCGTTGCCCATGA------------------------------- 741 ** * * ****** ********* * * consensus_5341#0 GGTTGCCCGTGCCAACCGAAAAGGCTTCCCGGTTTTGGCACCGGGACACAACAACCCCGT 785 consensus_5341#1 GGTGCCGTGCACGAAGCTCC---GCTTGCCGGAC---ACACCGTCAACCAGCAGTC--GC 747 consensus_5341#2 ------------------------------------------------------------ consensus_5341#0 TCAAACCNAACAATTCGGCTTGAAACCGTTTCAAGCCTTTNCCCCGGGAAAACCCAATTA 845 consensus_5341#1 TGAA--CGTGCAG----------------------------------------------- 758 consensus_5341#2 ------------------------------------------------------------ consensus_5341#0 AAGACAGTTTTTCAACCCGGTGNACCTATTTGAAAA 881 consensus_5341#1 ------------------------------------ consensus_5341#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||