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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 581 fasta sequence
[CCGCCCACGCGTCCGCAACAACAAAAAAAACACACACACACACACACACACACAACACCGCCTTGCAACTATAAAAAAGATGACAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCGATCGTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATTGCACTCTGATCTTGGGGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCAGAACATTTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACCCGGTTAACCGGGAAAGGGTGAACCGCCAAAGCAAAAAGGGAGGGGCGCCCTGTTGGTTAGTGCAGGTCGGGGTTGTGTCGCAATTATCCGCGAGTTTTTTTAGCTTAAACCATTTCGATAGGAGGCTCTGCCTTAGCGTAATTCCAAAAACATGTCTCAATGTTTCCAGTAATGTCCGTTCCATTAGGCAGCTGCTGTACGTACACACACGCACATGCACCGTGTA]
[+] EMBL BM623961 [CCGCCCACGCGTCCGCAACAACAAAAAAAACACACACACACACACACACACACAACACCGCCTTGCAACTATAAAAAAGATGACAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCGATCGTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATTGCACTCTGATCTTGGGGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCAGAACATTTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACCCGGTTAACCGGGAAAGGGTGAACCGCCAAAGCAAAAAGGGAGGGGCGCCCTGTTGGTTAGTGCAGGTCGGGGTTGTGTCGCAATTATCCGCGAGTTTTTTTAGCTTAAACCATTTCGATAGGAGGCTCTGCCTT ]
[+] EMBL BM616690 [ ACACACACACACACACACACACACAACACCGCCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCGTTCGTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATTGCACTCTGTTCTTGGCGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCGGAACATTTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACCCGGTTAACCGGGAAAGGGTGAACCGCCAGAGCAAAAAGGGAGGGGCGCCCTGTTGGTTAGTGCAGGTCGGGGTTGTGTCGCAATTAGCCGCGAGTTTTTTTAGTTTAAACCATTTCGATAGGAGGCTCTGCCTTAGCGTAATTCCAAAAACATGTCTCAATGTTTCCAGTAATGTCCGTTCCATTAGGCAGCTGCTGTACGTACACACACGCACATGCACCGTGTA]
consensusID : consensus_5342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[TGTGTGCATGTACTTTCTGTAAAACACAGTAAAAGATGCTTCTACACAAAATGTGTTTCGCTAATCAGTAAAACAAGAAGAAAAACAAAATCTATGTCTACACAATGTGNATACAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGCGATTATTAGCAGTGGGTGGTGGAAGGGTATCATCATAGGGGTGTTAGTAAAAGGGATCATTGTAAAGAACACACAACACCGCCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCGTTCGTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATTGCACTCTGTTCTTGGCGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCGGAACATTTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACC]
[+] EMBL BX620253 [TGTGTGCATGTACTTTCTGTAAAACACAGTAAAAGATGCTTCTACACAAAATGTGTTTCGCTAATCAGTAAAACAAGAAGAAAAACAAAATCTATGTCTACACAATGTGNATACAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGCGATTATTAGCAGTGGGTGGTGGAAGGGTATCATCATAGGGGTGTTAGTAAAAGGGATCATTGTAAAGAACACACAACACCGCCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCGTTCGTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATTGCACTCTGTTCTTGGCGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCGGAACATTTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACC]
consensusID : consensus_5342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[CAGAATTCCCCCCGAGGTNTTCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGTGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCTGTTCTGTGTGTGTGAGTTTTTTTTCTTGTCTCTTTTATTTGCACTCTGTTCTTGGCGTTTATTTATTTGTTTTAAATGATTTAAACCAGATTTTCGGAACATTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACCCTGGTTAACCGGTGAAAGGGTGAACCGGCAGAGCAAAAAGGGAGTTGTGCTGCCCTGGTTGGTTAGTGCAGGTCGGAGGTTGTGTCGCAATTAGCCGCGAGTTTATCTTAGTCTTAAACCATTTCGATAGGAGGCTCTGCCTTAGCGTAATGGTTTAAAAACACAANAAAACAGGC]
[+] EMBL AL931447 [CAGAATTCCCCCCGAGGTNTTCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCTTGTGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAACATATTTATGCTTGCCTGTTCTGTGTGTGTGAGTTTTTTTTCTTGTCTCTTTTATTTGCACTCTGTTCTTGGCGTTTATTTATTTGTTTTAAATGATTTAAACCAGATTTTCGGAACATTTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTTACCCTGGTTAACCGGTGAAAGGGTGAACCGGCAGAGCAAAAAGGGAGTTGTGCTGCCCTGGTTGGTTAGTGCAGGTCGGAGGTTGTGTCGCAATTAGCCGCGAGTTTATCTTAGTCTTAAACCATTTCGATAGGAGGCTCTGCCTTAGCGTAATGGTTTAAAAACACAANAAAACAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5342#0 ------------------------------------------------------------
consensus_5342#2 ------------------------------------------------------------
consensus_5342#1 TGTGTGCATGTACTTTCTGTAAAACACAGTAAAAGATGCTTCTACACAAAATGTGTTTCG 60
consensus_5342#0 ------------------------------------------------------------
consensus_5342#2 ------------------------------------------------------------
consensus_5342#1 CTAATCAGTAAAACAAGAAGAAAAACAAAATCTATGTCTACACAATGTGNATACAAAGGA 120
consensus_5342#0 ------------------------------------------------------------
consensus_5342#2 ------------------------------------------------------------
consensus_5342#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGCGATTATTAGCAGTGGGTG 180
consensus_5342#0 ----CCGCCCACGCGTCCGCAACAACAAAAAAAACACACACACACACACACACACACAAC 56
consensus_5342#2 --------------------------------------------CAGAATTCCCCCCGAG 16
consensus_5342#1 GTGGAAGGGTATCATCATAGGGGTGTTAGTAAAAGGGATCATTGTAAAGA-ACACACAAC 239
* * * * * *
consensus_5342#0 ACCGCCTTGCAACTATAAAAAAGATGACAAACGTGGTTACGGTGCAATGAGAGTTTTGCT 116
consensus_5342#2 GTNTTCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCT 76
consensus_5342#1 ACCGCCTTGCAGCTATAAAAAAGATGAGAAACGTGGTTACGGTGCAATGAGAGTTTTGCT 299
****** *************** ********************************
consensus_5342#0 TG-GCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAA 175
consensus_5342#2 TGTGCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAA 136
consensus_5342#1 TG-GCGCGTGAGCCACAACCACTTTACGTTGCTGTTGCTATCATGCTTAATTATTTTAAA 358
** *********************************************************
consensus_5342#0 CATATTTATGCTTGCCGATC--GTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATT-GCA 232
consensus_5342#2 CATATTTATGCTTGCCTGTTCTGTGTGTGTGAGTTTTTTTTCTTGTCTCTTTTATTTGCA 196
consensus_5342#1 CATATTTATGCTTGCCGTTC--GTGTGTGTGAGTTTTTTTTTCTGTTTCTTTTATT-GCA 415
**************** * ******************* *** ********* ***
consensus_5342#0 CTCTGATCTTGGGGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCAGAACATT 292
consensus_5342#2 CTCTGTTCTTGGCGTTTATTTATTTGTTTTAAATGATTTAAACCAGATTTTCGGAACATT 256
consensus_5342#1 CTCTGTTCTTGGCGTTTATTTATTGTTTTTAAATGATTTAAACCAGATTTTCGGAACATT 475
***** ****** *********** ************************** *******
consensus_5342#0 TTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTT 352
consensus_5342#2 TTT-ATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTT 315
consensus_5342#1 TTTTATGATCCTCTTCATCTTCGGACAGCAAGCTAAAACAAAAGCCAGAGAGTTGTACTT 535
*** ********************************************************
consensus_5342#0 ACCC-GGTTAACCGG-GAAAGGGTGAACCGCCAAAGCAAAAAGGGAGGGGCGC----CCT 406
consensus_5342#2 ACCCTGGTTAACCGGTGAAAGGGTGAACCGGCAGAGCAAAAAGGGAGTTGTGCTGCCCTG 375
consensus_5342#1 ACC--------------------------------------------------------- 538
***
consensus_5342#0 GTTGGTTAGTGCAGGTCGG-GGTTGTGTCGCAATTATCCGCGAGTTT-TTTTAG-CTTAA 463
consensus_5342#2 GTTGGTTAGTGCAGGTCGGAGGTTGTGTCGCAATTAGCCGCGAGTTTATCTTAGTCTTAA 435
consensus_5342#1 ------------------------------------------------------------
consensus_5342#0 ACCATTTCGATAGGAGGCTCTGCCTTAGCGTAAT--TCCAAAAACATGTCTCAATGTTTC 521
consensus_5342#2 ACCATTTCGATAGGAGGCTCTGCCTTAGCGTAATGGTTTAAAAACACAANAAAACAGGC- 494
consensus_5342#1 ------------------------------------------------------------
consensus_5342#0 CAGTAATGTCCGTTCCATTAGGCAGCTGCTGTACGTACACACACGCACATGCACCGTGTA 581
consensus_5342#2 ------------------------------------------------------------
consensus_5342#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||