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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1178 fasta sequence
[GTTTATATTAATGTGTTTTTCTTAATTTTCTTAATTAACGTGTTTTCACGTATTGCCTCTGTCTCTTGATTTACGTTACACACTGTCTACGTCTGTCAGCTTTGTGAATAACAAGCAAATGATGTGCGTTTGCATTGTCTTACTCTGTTGTACTTTCATCTCATATGCTGTGGTTATTGTTCTGCCGGTGTATATTTTCACCATGATTGAGTTCAATCCAATCAAAGTTCAATGTTGGTCTAGCTTTCAACAGGAAACGCTAAACACGAACAAAGACGATATATTAGCAAACACACGCCGGTAAAGAAGTCACTAAGCACAACTGAGAAACAGGTATGCAATGGACAGTAAATGAGTCGTACATAGGGCATAGCAGCTGGTTTTGATTTCTTTGCAATGATGTTTTCCCCATTAATTCCATCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTAATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCCATCCCTTGAACAAACCATAGCGAAATATTAGCATATAGGGTGCACACTTCATGCTAGGAGGGAAATGTACGAACGATAAATAGCAGAA--GCAGCGCTGTCTAGCGAAACAATGTAATTTACATCTTCTGGATTAT-AATGCCCGTACTGAAACAACCTGGAAAATGTGTGTGTGTGTGTATTTGTGTGTGAGTGTTTGAAGTCGTCCTGTTCAAACCTGTCCGTTCATTGTTGATCGAGGCGGCATAAGCATGAGACAAGCAAGTATAAGTCAGGAAAAGAAACGTTTAATGGAACGAAGAACTTACTCCCATGTTGTCCATGCCGGTAATGATCGTCGAAACACACAGTGTCAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATT]
[+] EMBL BX621916 [GTTTATATTAATGTGTTTTTCTTAATTTTCTTAATTAACGTGTTTTCACGTATTGCCTCTGTCTCTTGATTTACGTTACACACTGTCTACGTCTGTCAGCTTTGTGAATAACAAGCAAATGATGTGCGTTTGCATTGTCTTACTCTGTTGTACTTTCATCTCATATGCTGTGGTTATTGTTCTGCCGGTGTATATTTTCACCATGATTGAGTTCAATCCAATCAAAGTTCAATGTTGGTCTAGCTTTCAACAGGAAACGCTAAACACGAACAAAGACGATATATTAGCAAACACACGCCGGTAAAGAAGTCACTAAGCACAACTGAGAAACAGGTATGCAATGGACAGTAAATGAGTCGTACATAGGGCATAGCAGCTGGTTTTGATTTCTTTGCAATGATGTTTTCCCCATTAATTCCATCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTAATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCCATCCCTTGAACAAACCATAGCGAAATATTAGCATATAGGGTGCACACTTCATGCTAGGAGGGAAATGTACGAACGATAAATAGCAGAA GCAGCGCTGTCTAGCGAAACAATGTAATTTACATCTTCTGGATTAT AATGCCCG ]
[+] EMBL BX609289 [ ATTTCTTTGCAATGATGTTTTCCCCATTAATTCCATCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTAATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCCATCCCTTTGACAAACCATAGCGAAATATTAACATATAGGGTGCACACTTCATGCT ]
[+] EMBL BX628429 [ TGCTAGGTGGGAAGTGTACGAACGATAAATAGCAGAAGCGCAGCGCTGTCTAGCGAAACAATGTAATTTACATCTTCTGGATTATAAATGCCTGTACTGAAACAACCTGGAAAATGTGTGTGTGTGTGTATTTGTGTGTGAGTGTTTGAAGTCGTCCTGTTCAAACCTGTCCGTTCATTGTTGATCGAGGCGGCATAAGCATGAGACAAGCAAGTATAAGTCAGGAAAAGAAACGTTTAATGGAACGAAGAACTTACTCCCATGTTGTCCATGCCGGTAATGATCGTCGAAACACACAGTGTCAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATT]
consensusID : consensus_5346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCATAACACACACCACAGGCATTAAGAAAAAAAGGAAAACTTATTAATACTATTATCACGAGCAGTGGTGTTGTAACTAACACACGACGAGAGTCAGGGAGAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATTGATACAATAGCGTTAACGTCTTTTTTTTTTGGCTGACAATGCGCGCAGTGAAGGTAAAAGAGAAGGGGACACACTAGCGAACGAAAAGTTAGAAAAAAAAACATTTGAATTTTGCTTCTCCAAGTATTTTCCTCATAAAATACATCAACGATCAGAAACGATGAGCAGTTGCAGCGGTAATAATGGGTTCAGTTTCAGCACCAATTTGCATTGGTTAAATTGAAAAGTATAACGTACACNCAACTGGCAAATGCGATGTNAAGAGGATTGANCCATATAAAATA]
[+] EMBL BX621185 [CCATAACACACACCACAGGCATTAAGAAAAAAAGGAAAACTTATTAATACTATTATCACGAGCAGTGGTGTTGTAACTAACACACGACGAGAGTCAGGGAGAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATTGATACAATAGCGTTAACGTCTTTTTTTTTTGGCTGACAATGCGCGCAGTGAAGGTAAAAGAGAAGGGGACACACTAGCGAACGAAAAGTTAGAAAAAAAAACATTTGAATTTTGCTTCTCCAAGTATTTTCCTCATAAAATACATCAACGATCAGAAACGATGAGCAGTTGCAGCGGTAATAATGGGTTCAGTTTCAGCACCAATTTGCATTGGTTAAATTGAAAAGTATAACGTACACNCAACTGGCAAATGCGATGTNAAGAGGATTGANCCATATAAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5346#0 GTTTATATTAATGTGTTTTTCTTAATTTTCTTAATTAACGTGTTTTCACGTATTGCCTCT 60
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 GTCTCTTGATTTACGTTACACACTGTCTACGTCTGTCAGCTTTGTGAATAACAAGCAAAT 120
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 GATGTGCGTTTGCATTGTCTTACTCTGTTGTACTTTCATCTCATATGCTGTGGTTATTGT 180
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 TCTGCCGGTGTATATTTTCACCATGATTGAGTTCAATCCAATCAAAGTTCAATGTTGGTC 240
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 TAGCTTTCAACAGGAAACGCTAAACACGAACAAAGACGATATATTAGCAAACACACGCCG 300
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 GTAAAGAAGTCACTAAGCACAACTGAGAAACAGGTATGCAATGGACAGTAAATGAGTCGT 360
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 ACATAGGGCATAGCAGCTGGTTTTGATTTCTTTGCAATGATGTTTTCCCCATTAATTCCA 420
consensus_5346#1 ------------------------------------------------------------
consensus_5346#0 TCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTA 480
consensus_5346#1 ---CCATAACACACACCACAG-GCATTAAGAAAAAAAGGAAAACTTA-TTAATACTATTA 55
* * * * * * ** * * * * * ** ** ****
consensus_5346#0 ATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCC 540
consensus_5346#1 TCACGAGCAGTGGTGTTGTAACTAACACACGACGAGAGTCAGGGAGAGAGAGAGAGCGAG 115
*** * **** ** ** * * * * * * ** ** * * *
consensus_5346#0 ATCCCTTGAACAAACCATAGCGAAATATTAGCATATAGGGTGCACACTTCATGCTAGGAG 600
consensus_5346#1 AGCGAGAGAGAGAGCGAGAG-AAAGTGTTAGATAATAGA---------TCAACTAGAAAA 165
* * ** * * * ** ** * **** **** *** *
consensus_5346#0 GGAAATGTACGAACGATAAATAGCAGAAGCAGCGCTGTCTAGCGAAACAATGTAATTTAC 660
consensus_5346#1 AGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATAT 225
**** * ***** * * * * ** * ** * **** * ** **
consensus_5346#0 ATCTTCTGGATTATAATGCCCGTACTGAAACAACCTGGAAAATGTGTGTG-TGTGTGTAT 719
consensus_5346#1 ATGAAACAAAAAACTG-ATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAA 284
** * * ** * * * **** ** * **
consensus_5346#0 TTGTGTGTGAGTGTTTGAAGTCGTCCTGT-TCAAACCTGTCCGTTCATTGTTGATCGAGG 778
consensus_5346#1 TAGT-TGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAG---ATCGCTAGTTTGGT 340
* ** ** *** ** * * * *** ** * ** * * * *
consensus_5346#0 CGGCATAAGCATGAGACAAGCAAGTATAAGTCAGGAAAAGAAACGTTTAATGGAACGAAG 838
consensus_5346#1 GGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATTGATACAATAGCG 400
* * *** * * ** ** * ** * *** * ** ** ** *
consensus_5346#0 AACTTACTCCCATGTTGTCCATGCCGGTAATGATCGTCGAAACACACAGTGTCAGAGAGA 898
consensus_5346#1 ---TTAACGTCTTTTTTTTTTGGCTGACAATG----------CGCGCAGTG--AAGGTAA 445
*** * * ** * ** * **** * * ***** * * *
consensus_5346#0 GAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGA 958
consensus_5346#1 AAGAGAAGGGGACACACT-AGCGAACGAAAA-GTTAGAAAAAAAAACA-TTTGAATTTTG 502
** ** * ** * * ***** **** ****** ** * * ** * ***
consensus_5346#0 AAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATG 1018
consensus_5346#1 CTTCTCCAAGTATTTTCCTCATAAAATACATCAACGATCAGAAACGATGAGCAGTTGCAG 562
* * ** * * * * * * * * * *** * * * * *
consensus_5346#0 AAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGT 1078
consensus_5346#1 CGGTAATAATGGGTTCAGTTTCAGCACCAATTTGCATTGGT-TAAATTGAAAAGTATAAC 621
** ** * * ** **** * *** * ***** **** * * * ***
consensus_5346#0 TGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAG 1138
consensus_5346#1 -----GTACACNCAACTGGCAAATGCGATGTNAAGAGGATTG--ANCCATATAAAATA-- 672
* * * * *** ** * * *** * * * **
consensus_5346#0 AGATGGAAAGTATGATTACAAATTTCGACACAAAATGATT 1178
consensus_5346#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||