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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 889 fasta sequence
[AGAGAACAGTGGAGAAACAAAGTAAATACCAAATGAGTCACAGATAATCACAAAGCGCGAGGTTTGGACCTTTAGTAAATCTTATTATCGTACGAAATGTTATTGATATAAGGCATTATTATTAACACACACGCGTGTAAGCCGAGGGTGTTTGTGGTGGTTACGTGTAGTTTAAGGGGCAAACACACACATTCACACACATTCACACACTCACATATTTAAAGAAAACGTGTGAAAAGCAACTTTTACAAACCAGCGTTTGATATAGAACGATTTAACGGGAGGATGATAATGAGAACGAGAACGGGATAAATGAAGAATTAAAATAACTTGAAAACAATGTTTAAACTATTGTGTGAAGCTTACTGTAATTGCTAGTGTGTAAAATGGATTATTTTAAAAAGAAAAAAATGAAGCTCTACATAAAGACAGACAGAGAACAGGAAACAGAAAA-GTCAACAAATCGACAAAAAGGCGCAAACGAAGGCAATGGATTTCATCATTCCTATCAAACAC--TCTCTCACACACACACACACACCTACACTTACAATCTACATTCCACTTTGTACTGCAATGCATTAATTTGTGGAACGAAAAGTTCCCAAAACGCCGTCGAGAAGC---TTTTTTCCCGATTACATTAAATCTATATTCTAAAGCAGGATGTTGTTGTGTGTAACCGCTTGAGTTGTTTTAGATAACTTTGCTCTGCTGACCGGTGTATGTGTGTGTATGTGTGGGTGCGCCCGGAGTTGCGTAAATGTTTGCGTGCGTACGTATGTTGGTGTAAATTATGTTTGTGTTGGAAACGAAGTAAAATAAATTTAGTTGTTTTTGATTGTTGATTGAAAACTGGAAAAAAAAAAAAAAAAAAAAAAAAACCACATGTGCC]
[+] EMBL BX614999 [AGAGAACAGTGGAGAAACAAAGTAAATACCAAATGAGTCACAGATAATCACAAAGCGCGAGGTTTGGACCTTTAGTAAATCTTATTATCGTACGAAATGTTATTGATATAAGGCATTATTATTAACACACACGCGTGTAAGCCGAGGGTGTTTGTGGTGGTTACGTGTAGTTTAAGGGGCAAACACACACATTCACACACATTCACACACTCACATATTTAAAGAAAACGTGTGAAAAGCAACTTTTACAAACCAGCGTTTGATATAGAACGATTTAACGGGAGGATGATAATGAGAACGAGAACGGGATAAATGAAGAATTAAAATAACTTGAAAACAATGTTTAAACTATTGTGTGAAGCTTACTGTAATTGCTAGTGTGTAAAATGGATTATTTTAAAAAGAAAAAAATGAAGCTCTACATAAAGACAGACAGAGAACAGGAAACAGAAAA GTCAACAAATCGACAAAAAGGCGCAAACGAAGGCAATGGATTTCATCATTCCTATCAAACAC TCTCTCACACACACACACACACCTACACTTACAATCTACATTCCACTTTGTACTGCAATGCATTAATTTGTGGAACGAAAAGTTCCC AAGCCCCGTCGAGAAGCTTTTTTTTTCCCGATTACATTAA ]
[+] EMBL CNS08KC6 [ AAATAACTTGAAAACAATGTTTAAACTATTGTGTGAAGCTTACTGTAATTGCTAGTGTGTATAATGGATTATTTTAAAAGGAAAAAAATGAAGCTCTACATAAAGACAGACAGAGAAAAGGAAACAGAAAAGGGCAACAAATCGACAAAAAGGCGCAAACGAAGGCAATGGATTTCATCATTCCTATCAAAAACTTTCACCCACACACCCACACACACCTACACTTACAATCTACATTCCACTTTGTACTGCAATGCATTAATTTGTGGAACGAAAAGTTCCCAAAACGCCGTCGAGAAGC TTTTTTCCCGATTACATTAAATCTATATTCTAAAGCAGGATGTTGTTGTGTGTAACCGCTTGAGTTGTTTTAGATAACTTTGCTCTGCTGACCGGTGTATGTGTGTGTATGTGTGGGTGCGCCCGGAGTTGCGTAAATGTTTGCGTGCGTACGTATGTTGGTGTAAATTATGTTTGTGTTGGAAACGAAGTAAAATAAATTTAGTTGTTTTTGATTGTTGATTGAAAACTGGAAAAAAAAAAAAAAAAAAAAAAAAACCACATGTGCC]
[-] EMBL CNS08KC7 [ CACACCTAAACTTACAATCTACATTCCACTTTGTACTGCAATGCATTAATTTGTGGAACGAAAAGTTCCCAAAACGCCGTCGAGAAGC TTTTTTCCCGATTACATTAAATCTATATTTTAAAGCAGGATGTTGTTGTGTGTAACCGCTTGAGTTGTTTTAGATAACTTTGTTCTGCTGACCGGTGTA ]
consensusID : consensus_5348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GCACGTCATCACGGATANNTCACCCAAGCCTCCGAGGCTTTGGACCCTTTAACGTGANAATCCTGCTAGTGACTCCGCTACCGCACAATGTTCNATTGATCATGAGAGCGCCAGTTATTCACTAACACACACGCCGTTGTAACCCCNAGGTGTGCTCTTNTCGCTGGCTTACCTGTACGTTTAACGGGCCNAACACACACATTCACACACATTCACACACTCACATATTTAAAGAAAACGTGTGAAAAGCNCAACTTTTACAAACCAGCGTTTGATATAGAACGATTTAACGGGAGGATGATAATGAGAACGAGATACCGGGATATACATTGACAGGAATTTCAAACTAACCTTGAACACACCACATGCTTTAAACCTANTTGTGCTGAAGCCTTACCTGTACATTGCCTACGTGTGTGTCGCGGGTGCGCCCTGGAGTTGCGTAAATGTTTGCGTGCGTGCGTGCGTGTGTCGGTGTAAATTATGTTTGTGTTGGAAACGAAGTAAAATAAATTTAGTTGTTTTTGATTGTTGATTGAAAACTGGACAAAAAATATAATAAANAAATAAAAAGGGAAAGAAAAAAAACAGGCATGTTGNNAGCCTCGGCCGATCTGCCTC]
[-] EMBL BX467954 [GCACGTCATCACGGATANNTCACCCAAGCCTCCGAGGCTTTGGACCCTTTAACGTGANAATCCTGCTAGTGACTCCGCTACCGCACAATGTTCNATTGATCATGAGAGCGCCAGTTATTCACTAACACACACGCCGTTGTAACCCCNAGGTGTGCTCTTNTCGCTGGCTTACCTGTACGTTTAACGGGCCNAACACACACATTCACACACATTCACACACTCACATATTTAAAGAAAACGTGTGAAAAGCNCAACTTTTACAAACCAGCGTTTGATATAGAACGATTTAACGGGAGGATGATAATGAGAACGAGATACCGGGATATACATTGACAGGAATTTCAAACTAACCTTGAACACACCACATGCTTTAAACCTANTTGTGCTGAAGCCTTACCTGTACATTGCCTACGTGTGTGTCGCGGGTGCGCCCTGGAGTTGCGTAAATGTTTGCGTGCGTGCGTGCGTGTGTCGGTGTAAATTATGTTTGTGTTGGAAACGAAGTAAAATAAATTTAGTTGTTTTTGATTGTTGATTGAAAACTGGACAAAAAATATAATAAANAAATAAAAAGGGAAAGAAAAAAAACAGGCATGTTGNNAGCCTCGGCCGATCTGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5348#0 --AGAGAACAGTGGAGAAACAAAGTAAATACCAAATGAGTCACAGATAATCACAAAGCGC 58
consensus_5348#1 GCACGTCATCACGGATANNTCACCCAAGCCTCCGAGGCTTTG-----GACCCTTTAACGT 55
* * *** * * ** * * * * * * * **
consensus_5348#0 GAGGTTTGGACCTTTAGTAAATCTTATTATCGTACGAAATGTTATTGAT-ATAAG-GCAT 116
consensus_5348#1 GANAATC---CTGCTAGTGACTCC-GCTACCGCACAATGTTCNATTGATCATGAGAGCGC 111
** * * **** * ** ** ** ** * * ****** ** ** **
consensus_5348#0 TA-----TTATTAACACACACGCG--TGTAAGCCGAGGGTGT----TTGTGGTGG--TTA 163
consensus_5348#1 CAGTTATTCACTAACACACACGCCGTTGTAACCCCNAGGTGTGCTCTTNTCGCTGGCTTA 171
* * * ************ ***** ** ***** ** * * * ***
consensus_5348#0 CGTGTA-GTTTAAGGGGC-AAACACACACATTCACACACATTCACACACTCACATATTTA 221
consensus_5348#1 CCTGTACGTTTAACGGGCCNAACACACACATTCACACACATTCACACACTCACATATTTA 231
* **** ****** **** ****************************************
consensus_5348#0 AAGAAAACGTGTGAAAAGCA--ACTTTTACAAACCAGCGTTTGATATAGAACGATTTAAC 279
consensus_5348#1 AAGAAAACGTGTGAAAAGCNCAACTTTTACAAACCAGCGTTTGATATAGAACGATTTAAC 291
******************* **************************************
consensus_5348#0 GGGAGGATGATAATGAGAACGAGA-ACGGGATAAATGAAGAATTAAAATAACTTGAAAAC 338
consensus_5348#1 GGGAGGATGATAATGAGAACGAGATACCGGG---ATATACATTGACAGGAATTTCAAACT 348
************************ ** ** ** * * * * * ** ** ***
consensus_5348#0 AATGTTTAAACTATTGTGTGAAGCTTACTGTAATTGCTAGTGTGTAAAATGGATTATTTT 398
consensus_5348#1 AACCTTGAACACACCACATG-------CTTTAAACCTANTTGTGCTGAA-GCCTTACCTG 400
** ** ** * ** ** *** **** ** * *** *
consensus_5348#0 AAAAAGAAAAAAATGAAGCTCTACATAAAGACAGACAGAGAACAGGAAACAGAAAAGTCA 458
consensus_5348#1 TA----------------CATTGCCTACGTGTGTGTCGCGGGTGCGCCCTGGAGTTGCGT 444
* * * * ** * * * ** *
consensus_5348#0 ACAAATCGACAAAAAGGCGCAAACGAAGGCAATGGATTTCATCATTCCTATCAAACACTC 518
consensus_5348#1 AAATGTTTGCGTGCGTGCGTGCGTGT-GTCGGTGTAAATTAT-GTTTGTGTTGGAAACGA 502
* * * * *** * * * ** * * ** ** * * * **
consensus_5348#0 TCTCACACACACACACACACCTACACTTAC-AATCTACATTCCACTTTGTACTGCAATGC 577
consensus_5348#1 AGTAAAATAAATTTAGTTGTTTTTGATTGTTGATTGAAAACTGGACAAAAAATATAATAA 562
* * * * * * * ** ** * * * * ***
consensus_5348#0 ATTAATTTGTGGAACGAAAAGTTCCCAAAACGCCGTCGAGAAGCTTTTTTCCCGATTACA 637
consensus_5348#1 ANAAATA---AAAAGGGAAAGAAAAAAAACAGGCATGTTGNNAGCCTCGGCCGATCTGCC 619
* *** ** * **** *** * * * * * ** * *
consensus_5348#0 TTAAATCTATATTCTAAAGCAGGATGTTGTTGTGTGTAACCGCTTGAGTTGTTTTAGATA 697
consensus_5348#1 TC---------------------------------------------------------- 621
*
consensus_5348#0 ACTTTGCTCTGCTGACCGGTGTATGTGTGTGTATGTGTGGGTGCGCCCGGAGTTGCGTAA 757
consensus_5348#1 ------------------------------------------------------------
consensus_5348#0 ATGTTTGCGTGCGTACGTATGTTGGTGTAAATTATGTTTGTGTTGGAAACGAAGTAAAAT 817
consensus_5348#1 ------------------------------------------------------------
consensus_5348#0 AAATTTAGTTGTTTTTGATTGTTGATTGAAAACTGGAAAAAAAAAAAAAAAAAAAAAAAA 877
consensus_5348#1 ------------------------------------------------------------
consensus_5348#0 ACCACATGTGCC 889
consensus_5348#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||