These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCCATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTTTCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTACGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCGACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAAACGGCGTGTGCGTGTCCCTGACACTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAATCTTACACACACATTTTTTCCTGCAAACCCGTCAACCAGGTAGCGCCGCGCGGCGCTCTAGGGTTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA] [+] EMBL BM622146 [CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCCATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTTTCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTACGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCGACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAAACGGCGTGTGCGTGTCCCTGACACTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAATCTTACACACACATTTTTTCCTGCAAACCCGTCAACCAGGTAGCGCCGCGCGGCGCTCTAGGGTTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA] consensusID : consensus_535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [CAGCAGAAATCGGCACGAGGGTCATGAACACATACACAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGGGGAAGGAGATTCGCGTTTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCATTCCGCGTGTCACCCTTCGTCCCGTACCGTTTTTCATCACGTAATAATACACACAAGTCGCGACGGGGTTTGAGCTGATCGAGTACGACGTG] [+] EMBL BX469544 [CAGCAGAAATCGGCACGAGGGTCATGAACACATACACAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGGGGAAGGAGATTCGCGTTTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCATTCCGCGTGTCACCCTTCGTCCCGTACCGTTTTTCATCACGTAATAATACACACAAGTCGCGACGGGGTTTGAGCTGATCGAGTACGACGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_535#0 CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCC 60 consensus_535#1 ------------------------------------------------------------ consensus_535#0 ATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTT 120 consensus_535#1 ------------------------------------------------------------ consensus_535#0 TCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTA 180 consensus_535#1 ------------------------------------------------------------ consensus_535#0 CGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCG 240 consensus_535#1 -------------------------------------------CAGCAGAAATCGGCACG 17 * * * * *** ** consensus_535#0 ACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAA 300 consensus_535#1 AGGGTCATGAACAC-ATACACAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTG 76 * * ** * ** * * * ** ** ** * *** * ** consensus_535#0 ACGGCGTGTGCGTGTCCCTGACA---CTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAA 357 consensus_535#1 CAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGGGGAAGGAGATTCGCGT 136 * * * ** ** ** * ** * * * **** ** consensus_535#0 TCTTACACACACATTTTTTCCTGCAAAC-CCGTCAACCAGGTAGCGCCGCGCGGCGCTCT 416 consensus_535#1 TTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCATT-CCGCGTGTCACCCT 195 * ** * * *** * *** ** ** * ** * ***** * * * ** consensus_535#0 AGGGTTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACA 476 consensus_535#1 ----TCGTCCCGTACCGTTTTTCATCACGTAAT----AATACACACAAGTCGCGACGGGG 247 * * * * * * ** *** * ** * * ** * ** consensus_535#0 TACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTG 536 consensus_535#1 TTTGAGCTGATCGAGTACGACGTG------------------------------------ 271 * ** *** ** consensus_535#0 CCATACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA 585 consensus_535#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||