These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence [GGCAAAGAATCCCGCACGAGGTTAACACATGAACGGTATAGAGGCCATGATGGTGACTTTCTATGACCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGACAGACGCAAAGTCATGAAACATAAAGACTGTTTCTTAGAAACGTCGAACGTTTCGAGCACACAGATCAGTCGATGTCAAAGCNACGGANTCGCCGGTGTTTTCAGCGGGAGGGGCAAGACTAGGAGAGGGCGCCGAACAGACGGCGTTTNNACACGATCCGCCTGGNGCTGTACGGCNCNTGTGACGCCCCTTANTTNCTCTTGNGTCCCTACCCCANCGCCCCGCGTTCCGCACTNNGGGGGNNCCCACCCCTCGGNCGGAGGCCNGCAGTCNCGGNCTGCCTCGGCACTGCCNGCCGATANGCGTTAGTATTGCCCNCGACATCGAAAGANNACATNGCGNAAAGGGTAGGATNAGNTACGGGGGCGCGNGNATCNGCGACGTTCAGNCCNGTGCGGAACAGNACATGCCGNAGCACCACCNCGACGGCCCCACGGCCCACAGCGGCAGCGNCCGGACCTTCACCGCGGGCNTNACGAAGCTNTNGCNGCACCTCGGTCTGCNCCGACGCAGGACGACNAGGCNAGCATGGGGGGCCATACGCGAGGCANTCNGCACAGAGGCGGCGCNGTGTNGCTGGGACGNTACGATAGNGNGGTGNGCNNNCTCCGGGNGGCANCCGTNCCCGGGNCCACACACNGATCGTNGCTAGCAGTAACNCGCTANAGGGAGGNAGGNGGGGCGAGGTGCGGNANTGCCGAGAAGGCGAACAGTAAANCGCGAGANCCGGCGNGNAGGTGATCGGACCANGNCCCACTNGCGNGCNGGAACCAGTNNAAANCGACCAGNAGAACCCTNCGACCNGGCNAGTCNACGTTGGGANACAGGCACGTCAGAGGNNACCGCACAGCCGGACGCAGCGCCNGCAGNCCCCNAGGCCCCCGAGGAGCCGGGGCNGCNGCCGACACNNTNCGCTACNANANNTCGGAGCANCGGCGANGGCCNGTCGAGCAAANCGNGNCNGCCNNGCCTCGNCCGCTAGGCNCNCCGGCAGGCGAGGGGCAGNNNCGNNAGGNAGTNTGACNATNCTGCGCNTNGANANTGNGCTCAANGTAGCGTTTCCAATGCGACNCNNNTTGCATNTGTTAAGANGGNGANGGTGCGTGAANNACCNGAGNAAACNCACGAACNGGGNAGACNCACNGCCGGGCNANACACACCGCCGCGAGNGANGACGANCTGCCNNGATCGCCAGCCNACNCCGCNCCTGGAACGNGGNCACGAGNCNNGGCCCCGNGNNGCNGGCCNNCCNCGGCCGCGGGNCTGAGCAGCAAANNAGNNAGCNANNATACGATCAACGACNANCGGACGCCNAGTCGANNNCNGCCGACCCTAAANCCANNAGNCGAANG] [+] EMBL BX466119 [GGCAAAGAATCCCGCACGAGGTTAACACATGAACGGTATAGAGGCCATGATGGTGACTTTCTATGACCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGACAGACGCAAAGTCATGAAACATAAAGACTGTTTCTTAGAAACGTCGAACGTTTCGAGCACACAGATCAGTCGATGTCAAAGCNACGGANTCGCCGGTGTTTTCAGCGGGAGGGGCAAGACTAGGAGAGGGCGCCGAACAGACGGCGTTTNNACACGATCCGCCTGGNGCTGTACGGCNCNTGTGACGCCCCTTANTTNCTCTTGNGTCCCTACCCCANCGCCCCGCGTTCCGCACTNNGGGGGNNCCCACCCCTCGGNCGGAGGCCNGCAGTCNCGGNCTGCCTCGGCACTGCCNGCCGATANGCGTTAGTATTGCCCNCGACATCGAAAGANNACATNGCGNAAAGGGTAGGATNAGNTACGGGGGCGCGNGNATCNGCGACGTTCAGNCCNGTGCGGAACAGNACATGCCGNAGCACCACCNCGACGGCCCCACGGCCCACAGCGGCAGCGNCCGGACCTTCACCGCGGGCNTNACGAAGCTNTNGCNGCACCTCGGTCTGCNCCGACGCAGGACGACNAGGCNAGCATGGGGGGCCATACGCGAGGCANTCNGCACAGAGGCGGCGCNGTGTNGCTGGGACGNTACGATAGNGNGGTGNGCNNNCTCCGGGNGGCANCCGTNCCCGGGNCCACACACNGATCGTNGCTAGCAGTAACNCGCTANAGGGAGGNAGGNGGGGCGAGGTGCGGNANTGCCGAGAAGGCGAACAGTAAANCGCGAGANCCGGCGNGNAGGTGATCGGACCANGNCCCACTNGCGNGCNGGAACCAGTNNAAANCGACCAGNAGAACCCTNCGACCNGGCNAGTCNACGTTGGGANACAGGCACGTCAGAGGNNACCGCACAGCCGGACGCAGCGCCNGCAGNCCCCNAGGCCCCCGAGGAGCCGGGGCNGCNGCCGACACNNTNCGCTACNANANNTCGGAGCANCGGCGANGGCCNGTCGAGCAAANCGNGNCNGCCNNGCCTCGNCCGCTAGGCNCNCCGGCAGGCGAGGGGCAGNNNCGNNAGGNAGTNTGACNATNCTGCGCNTNGANANTGNGCTCAANGTAGCGTTTCCAATGCGACNCNNNTTGCATNTGTTAAGANGGNGANGGTGCGTGAANNACCNGAGNAAACNCACGAACNGGGNAGACNCACNGCCGGGCNANACACACCGCCGCGAGNGANGACGANCTGCCNNGATCGCCAGCCNACNCCGCNCCTGGAACGNGGNCACGAGNCNNGGCCCCGNGNNGCNGGCCNNCCNCGGCCGCGGGNCTGAGCAGCAAANNAGNNAGCNANNATACGATCAACGACNANCGGACGCCNAGTCGANNNCNGCCGACCCTAAANCCANNAGNCGAANG] consensusID : consensus_5352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [CCCCGGCCCACGTGAGAAAAGCGTCATCGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACAGCTATCCTCAAGTAAGATTAAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATAACACACAATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCACTAAACAAGGTACTATATATACATATACACACAGCAGCATACACACTATAAATTATATAAAATTATATACATTCGTCGTGTTGGAAGAAACTACCATTTTATTCAAAGTACCAGCAAATGGTGTGGGGTCGACGAAGACGACAATGGAATCGTGCAAAAACTAGGGGACTTGTAACTTGGCTGCTTTTAAGAAGAAACAAACACC] [+] EMBL BX616934 [CCCCGGCCCACGTGAGAAAAGCGTCATCGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACAGCTATCCTCAAGTAAGATTAAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATAACACACAATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCACTAAACAAGGTACTATATATACATATACACACAGCAGCATACACACTATAAATTATATAAAATTATATACATTCGTCGTGTTGGAAGAAACTACCATTTTATTCAAAGTACCAGCAAATGGTGTGGGGTCGACGAAGACGACAATGGAATCGTGCAAAAACTAGGGGACTTGTAACTTGGCTGCTTTTAAGAAGAAACAAACACC] [+] EMBL BM650703 [ ccgGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACAGCTATCCTCAAGTAAGATTAAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATAACACACAATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCA ] consensusID : consensus_5352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CCAAGAATTCGGCACGATGGAAGATTAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATACACACAATTGCGTAGACGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAAC] [+] EMBL BX467908 [CCAAGAATTCGGCACGATGGAAGATTAATAATATCTGTGGTAGAGAGAATGAACACATGAACGGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAAACATAAAGACTTTTCTTAGAAACTCGAACTTTCGAGCACACGATCATCATTCAAACACGATCGCGGTTTAGGGAGGGCAAGTAGAGAGCGCGAAACGCGTCAAACGAACGTGGGTGTTTGTTTTGAGCATATTATATGATACTACAAAGCAAATGAGATAGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGTATAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTTGGAGGGAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATGCACCGATACACACAATTGCGTAGACGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 GGCAAAGAATCCCGCACGAGGTTAACACATGAACGGTATAGAGGCCATGATGGTGACTTT 60 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 CTATGACCCCGGTTTAGATCCGTACTGCTGTTTGTTGCCATCCTCTCAGGCATCATAAGG 120 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 CAGGCAGACAGACGCAAAGTCATGAAACATAAAGACTGTTTCTTAGAAACGTCGAACGTT 180 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 TCGAGCACACAGATCAGTCGATGTCAAAGCNACGGANTCGCCGGTGTTTTCAGCGGGAGG 240 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 GGCAAGACTAGGAGAGGGCGCCGAACAGACGGCGTTTNNACACGATCCGCCTGGNGCTGT 300 consensus_5352#1 --------------------------------------------------CCCCGGCCCA 10 consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 ACGGCNCNTGTGACGCCCCTTANTTNCTCTTGNGTCCCTACCCCANCGCCCCGCGTTCCG 360 consensus_5352#1 CGTGAGAAAAGCGTCATCGTCCCTCCCCATATATAGCCGTCTTAAAAAAAAACAAAAACA 70 consensus_5352#2 ---------------------------------------------------CCAAGAAT- 8 consensus_5352#0 CACTNNGGGGGNNCCCACCCCTCGGNCGGAGGCCNGCAGTCNCGGNCTGCCTCGGCACTG 420 * * consensus_5352#1 GCTATCCTCAAG---TAAGATTAAATA--ATATCTGTGGTAGAGAGAATGAACA---CAT 122 consensus_5352#2 -TCGGCACGATG---GAAGATTAA-TA--ATATCTGTGGTAGAGAGAATGAACA---CAT 58 consensus_5352#0 CCNGCCGATANGCGTTAGTATTGCCCNCGACATCGAAAGANNACATNGCGNAAAGGGTAG 480 * * * * *** * *** * * * * * * * consensus_5352#1 GAAC-GGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTAC-TGCT 180 consensus_5352#2 GAAC-GGTATAGAGGCGATGATGGTGACTTTCTATGCCCCGGTTTAGATCCGTAC-TGCT 116 consensus_5352#0 GATNAGNTACGGGGGCGCGNGNATCNGCGACGTTCAGNCCNGTGCGGAACAGNACATGCC 540 ** * ** * **** * * ** ** ** * * ** *** consensus_5352#1 GT----TTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAA 236 consensus_5352#2 GT----TTGTTGCCATCCTCTCAGGCATCATAAGGCAGGCAGCCAGACGCAAATCATGAA 172 consensus_5352#0 GNAGCACCACCNCGACGGCCCCACGGCCCACAGCGGCAGCGNCCGGACCTTCACCGCGGG 600 * * * * ** * ** * * ** ** *** * * * consensus_5352#1 ACATAAAGACTTTTCTTAGAAACTCGAACT-TTCGAGCACACGATCATCATTCAAACACG 295 consensus_5352#2 ACATAAAGACTTTTCTTAGAAACTCGAACT-TTCGAGCACACGATCATCATTCAAACACG 231 consensus_5352#0 CNTNACGAAGCTNTNGCNGCACCTCGGTCTGCNCCGACGCAGGACGACNAGGCNAGCATG 660 * * * * * * **** ** * * ** ** * * * * ** * consensus_5352#1 A----TCGCGGTTTAGGGAG--GGCAAGTAGAGAGCGCGAAACGCGTCAAACGA------ 343 consensus_5352#2 A----TCGCGGTTTAGGGAG--GGCAAGTAGAGAGCGCGAAACGCGTCAAACGA------ 279 consensus_5352#0 GGGGGCCATACGCGAGGCANTCNGCACAGAGGCGGCGCNGTGTNGCTGGGACGNTACGAT 720 * *** * *** ** **** * *** consensus_5352#1 -ACGTGG-GTGTTTGTTTTGAGC----ATATTATATGATACTACAAAGCAAATGAGAT-- 395 consensus_5352#2 -ACGTGG-GTGTTTGTTTTGAGC----ATATTATATGATACTACAAAGCAAATGAGAT-- 331 consensus_5352#0 AGNGNGGTGNGCNNNCTCCGGGNGGCANCCGTNCCCGGGNCCACACACNGATCGTNGCTA 780 * ** * * * * * * * * *** * * * consensus_5352#1 --AGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGT 453 consensus_5352#2 --AGGAACCACCTAGGGAGAGAGAGGGTGTGGGAAGCGTGTGTGTGCAGTGAAATTATGT 389 consensus_5352#0 GCAGTAACNCGCTANAGGGAGGNAGGNGGGGCGAGGTGCGGNANTGCCGAGAAGGCGAAC 840 ** *** *** * *** *** * * ** * * * *** * *** consensus_5352#1 A-TAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTT-GGAGG 511 consensus_5352#2 A-TAGGGTAAAATATCTGTATCAAACAAAAAACCACACGAAGATCAGGAAATTTTGGAGG 448 consensus_5352#0 AGTAAANCGCGAGANCCGG--CGNGNAGGTGATCGGACCANGNCCC---ACTNGCGNGCN 895 * ** * * * * * * * * ** * * * * * * consensus_5352#1 GAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATG-CACCGATAACACACA 570 consensus_5352#2 GAAACATATAGAACTTGATAGTGAGAAATGCATATACACACATG-CACCGATA-CACACA 506 consensus_5352#0 GGAACCAGTNNAAANCGACCAGNAGAACCCTNCGACCNGGCNAGTCNACGTTGGGANACA 955 * *** * ** ** **** * * * * ** * * *** consensus_5352#1 ATTGCGTAGACAGAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAACCACTAAA 630 consensus_5352#2 ATTGCGTAGAC-GAAAGGACATATTATATATACACCCTTCCCTCCCCTCCAAC------- 558 consensus_5352#0 GGCACGTCAGAGGNNACCGCACAGC-CGGACGCAGCGCCNGCAGNCCCCNAGGCCCCCGA 1014 *** * * ** * * ** * * ** * * consensus_5352#1 CAAGGTACTATATATACATATACACACAGCAGCATACACACTATAAATTATATAAAATTA 690 consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 GGAGCCGGGGCNGCNGCCGACACNNTNCGCTACNANANNTCGGAGCANCGGCGANGGCCN 1074 consensus_5352#1 TATACATTCGTCGTGTTGGAAGAAACTACCATTTTATTCAAAGTACCAGCAAATGGTGTG 750 consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 GTCGAGCAAANCGNGNCNGCCNNGCCTCGNCCGCTAGGCNCNCCGGCAGGCGA-GGGGCA 1133 consensus_5352#1 GGGTCGACGAAGACGACAATGGAATCGTGCAAAAACTAGGGGACTTGTAACTTGGCTGCT 810 consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 GNNNCGNNAGGNAGTNTGACNATNCTGCGCNTNGAN-ANTGNGCTCAANGTAGCGTTTCC 1192 consensus_5352#1 TTTAAGAAGAAACAAACACC---------------------------------------- 830 consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 AATGCGACNCNNNTTGCATNTGTTAAGANGGNGANGGTGCGTGAANNACCNGAGNAAACN 1252 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 CACGAACNGGGNAGACNCACNGCCGGGCNANACACACCGCCGCGAGNGANGACGANCTGC 1312 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 CNNGATCGCCAGCCNACNCCGCNCCTGGAACGNGGNCACGAGNCNNGGCCCCGNGNNGCN 1372 consensus_5352#1 ------------------------------------------------------------ consensus_5352#2 ------------------------------------------------------------ consensus_5352#0 GGCCNNCCNCGGCCGCGGGNCTGAGCAGCAAANNAGNNAGCNANNATACGATCAACGACN 1432 consensus_5352#1 ------------------------------------------------- consensus_5352#2 ------------------------------------------------- consensus_5352#0 ANCGGACGCCNAGTCGANNNCNGCCGACCCTAAANCCANNAGNCGAANG 1481 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||