These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence [CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACAACT-GACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGGTGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGGAAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGACGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTTTTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGT---AGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAAGCTCTTTTTCTGTACGTTAAGATATGCGTTAGTTGCAATTTTTACAGGACCTATCCTGTGCTGGTAAGTGG] [+] EMBL BX602438 [CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACAACT GACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGGTGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGGAAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGACGGGAGGCGGCGG ] [+] EMBL BX612498 [ ACTGGACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGGTGGTGGTGTCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGGAAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTTTTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGT AGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAAGCTCTTTTTCTGTACGTTAAGATATGCGTTAG ] [+] EMBL BX611293 [ AGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTTTTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTTATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTTTGTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTATTTGTATGGATCGAAAAGCTCTTTTTCTGTACGTTAAGATATGCGTTAGTTGCAATTTTTACAGGACCTATCCTGTGCTGGTAAGTGG] consensusID : consensus_5356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [GCAAGAATCGGCACGATGGACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCTTTTAAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCATATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTTGTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCATTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAATTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG] [+] EMBL BX467983 [GCAAGAATCGGCACGATGGACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACAATTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAGACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCTTTTAAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGAGTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCATATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCGAACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTTGTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAATACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAGCAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCATTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAATTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5356#0 CGAACCAGTTCGCCAATCAGGTCCAATACGACTATAACAATCACCGTGCAGGCGGCAACA 60 consensus_5356#1 ------------------------------------------------------------ consensus_5356#0 ACTGACCAACAACAACGGTGGCCGCAACGCTAACTATAACAATAACCGGGGCGGCGGCGG 120 consensus_5356#1 ------------------------------------------------------------ consensus_5356#0 TGGTGGTGGCGGTGGGTACAATCGTGGCGGTGGAAACGGAGGAAGACAGTTCCAGCAGGG 180 consensus_5356#1 ------------------------------------------------------GCAAG- 5 *** * consensus_5356#0 AAATGGGGGAGGTGGCCAACGAAATAACAATAACAACAACAACCGCTACGGGCAGAACAA 240 consensus_5356#1 -AATCGGCACGATGG---ACGAAATAGCAATAACAACAACAACCGCTACGGGCAGAACAA 61 *** ** * *** ******** ********************************* consensus_5356#0 TTATGGATCGACGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAG 300 consensus_5356#1 TTATGGATCGGCGGGAGGCGGCGGTGGTGGCGGAAATAATCGGTTTAACAATCAGCGAAG 121 ********** ************************************************* consensus_5356#0 ACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTTTT 360 consensus_5356#1 ACAGTACTAATCGCGGGCAAATCGGACGTGTGTCGTTCCCTTCCGAGTTGCATTTTTCTT 181 ********************************************************* ** consensus_5356#0 TTTTAATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGA 420 consensus_5356#1 TTA-AATTCAATTACAACATTCGGGAGCCGCACAACCATCCCCGGGTAGTAGTGGTGGGA 240 ** ******************************************************** consensus_5356#0 GTAGTA---GAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCTT 477 consensus_5356#1 GTAGTAACAGAAGTAGTTGTGGATAAATGATACGTAGGATGGGCAACCGGAGGCGACCAT 300 ****** ************************************************* * consensus_5356#0 ATAATGCCGCCAAGACAAGGAAGCATCAATCACGATCATTTACTATTGAGACTCCCCCCG 537 consensus_5356#1 ATAATGCCGCCAAGACAAGGAAACATCAATCACGATCATTTACTATTGAGACTCACCCCG 360 ********************** ******************************* ***** consensus_5356#0 AACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGCGGTT--------------T 583 consensus_5356#1 AACGTGTGGTACAAATTGGAATATTTCGTATGGATGAAAGTGGTTCACCAGAAAGGGTTT 420 **************************************** **** * consensus_5356#0 GTACTGTAAAACGAGAAAAACAACCAATTCTCGATTTTCTTTACAAACATGTGTAGGGAA 643 consensus_5356#1 GTAGTGTAAAACGGGAAAAACAACCAAATCTCGATTTTCTTTACAAACATGTGTAGGGAA 480 *** ********* ************* ******************************** consensus_5356#0 TACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAG 703 consensus_5356#1 TACGTACGTTTTTTCTTAGATCAAGAAAAATATTCAAGGATTTATAAATGTAGGCGCAAG 540 ************************************************************ consensus_5356#0 CAGCATAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGTA 763 consensus_5356#1 CAGCGTAGGAACTTAGGAATCACACTACCAGATGAGGATCGTTACCATACAAACAGTGCA 600 **** ***************************************************** * consensus_5356#0 TTTGTATGGATCGAAAA-GCTCTTT-TTCTGTACGTTAA-GATATGCG-TTAGTTGCAAT 819 consensus_5356#1 TTTGTATGGATCGAAAAAGCTCTTTANTCCGTAGGTTAACGATATGCGGTTAGTTGCAAA 660 ***************** ******* ** *** ***** ******** ********** consensus_5356#0 TTTT---ACAGGACCTATCCT-GTGCTGG-TAAGTGG------- 851 consensus_5356#1 TTTTTACACGGTATCTATCCTTGTGCTGGGTAAGTGGTACCCGG 704 **** ** * * ******* ******* ******* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||