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Anopheles gambiae
cluster # 5357 cluster # 5357       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5357#0 length = 1078 sequences # 3  
consensus_5357#1 length = 969 sequences # 1  

consensusID : consensus_5357#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1078
fasta sequence
                              [CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGCGATCGTAAAAAGGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGGCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGCCAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGACACGGCGATGAAGCTGTCCGGCCTGAGGAAAACGGCGTACGCGAACGGGCGCCGCACGCTGGAAAAGGTGCTGGACATTAACAAAACGCTCGGCATCGGGGAGATTTGTGTGCAGGTGGGCGTTACCCAGGTGCAGCAGGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGGACAGGGCGGCGGCGGCGGCGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGCAGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCACCGGTGCGGCCGATATGGGACCGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCTGGCAGCAAGGGGCGAAGAGGAGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCACGCGAGTTCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCACGAACCATCATTTCACGATCCCACATCTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAGGACGCAATGTTAGTGTTTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATTGTTAAGACCCTAGCTTTACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA]

[+] EMBL BM581350             [CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGCGATCGTAAAAAGGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGGCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGCCAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGACACGGCGATGAAGCTGTCCGGCCTGAGGAAAACGGCGTACGCGAACGGGCGCCGCACGCTGGAAAAGGTGCTGGACATTAACAAAACGCTCGGCATCGGGGAGATTTGTGTGCAGGTGGGCGTTACCCAGGTGCAGCAGGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGGACAGGGCGGCGGCGGCGGCGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGCAGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCACCGGTGCGGCCGA                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS08R54             [                                                                                                                             TTCAAAAG TAGG CTCG CAACTATGAGT CCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGCCAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGACATGGCGATGAAGCTGTCCGGTCTGAGGAAAACGGCGTACGCGAACGGGCGTCGCACGCTGGAGAAGGTTCTGGACATTAACAAAACGCTCGGCATCGGGGAGATCTGTGTGCAGGTGGGCGTTACCCAGGTGCAGCAAGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGGACAGGGCGGC    GC  CGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGCAGAAGGTGAAA CGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAATTTCTCGCCACCGGTGCGGCCGATATGGGACCGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCTGGCAGCAAGGGGCGAAGAGGAGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCACGCGAGTTCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCACGAACCATCATTTCACGATCCCACATC                                                                                                                                                      ]
[-] EMBL CNS08R55             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCAGGCCAATGGGGGGGGGAGCAGTGCGGCACGGAAGCACGCGAGTCCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCAGGAACCATCATTTCACGATGGGAGATGTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAGGACGCAATGTTAGTGTTTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATTGTTAAGACCCTAGCTTTACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA]


>consensus_5357#0 CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGC GATCGTAAAAAGGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCA GCTTGTTCAAAAGCTAGGCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGAACT GCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCAGTCTGGGCGACTACGC CAAGGCAACGATCTGTATCGACCTTGCCTCCAGCCTGCTCGGACTGCCGTTCGACACCGA CACGGCGATGAAGCTGTCCGGCCTGAGGAAAACGGCGTACGCGAACGGGCGCCGCACGCT GGAAAAGGTGCTGGACATTAACAAAACGCTCGGCATCGGGGAGATTTGTGTGCAGGTGGG CGTTACCCAGGTGCAGCAGGAAGCGGCCACACTGCTCGAAGCGTACAAGCAGTACGCCGG ACAGGGCGGCGGCGGCGGCGGGATCGATTTTAGCCACCCGCAGTACGCGACGATGGCCGT GTTTCAGGCGTGCAAGCGGCAGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAG CCATCTCAAGCCGGCCCAGTGGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCAC CGGTGCGGCCGATATGGGACCGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCT GGCAGCAAGGGGCGAAGAGGAGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCA CGCGAGTTCGGAAAAGATCGAACCGTACCAGAGCTGGAAGAAACGGATGCTCGAGAAGGC GTACCGGGAGCTGGAGCTGCAACGGGACAGTGGGTAAATGTCCCTTTTCTCAACCCCCCC ACGAACCATCATTTCACGATCCCACATCTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAG GACGCAATGTTAGTGTTTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATT GTTAAGACCCTAGCTTTACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA



consensusID : consensus_5357#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 969
fasta sequence
                              [CCCCGAGGTTATGGTTGCGATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCATGTCTGGGCTGACTACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCCTGCTCTGGACTGCCTGTTCTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGAAAACGGCGTACTGCGAACTGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAAAACNGCTCTGGCATCGCGGGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCAAAGAAGCTGGCCAACACTGCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGTGCNGAGCCCTGTGGAATCCGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGAATTGGGCCCGGTGTTTTCCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAAAACCGNCCCAAGNCAACGAAACTGGCTTGCGTTACAGACCGGTTCAAGGCACCATCTCCAAAANCCCTNGGNCCCACACGNCGCACCCTTGCCCTGNGCAGCGACAGNGAAACNCCTGGTGGACAGANACACGTACNCNCTCNNGCCCCACCCCGGAGCATGGCCGCCCCGCCTAATTAGNNCACACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGACCGGCTGTGCACTCGAAAGCCATGGGCCACCCCAACGCGGCTCCCCAACGACNANGNCAGCCNCGGCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNGCACACGNGAACCNCCGCCNCNGCCNCGA]

[+] EMBL AL931842             [CCCCGAGGTTATGGTTGCGATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGCGATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCTTGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCATGTCTGGGCTGACTACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCCTGCTCTGGACTGCCTGTTCTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGAAAACGGCGTACTGCGAACTGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAAAACNGCTCTGGCATCGCGGGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCAAAGAAGCTGGCCAACACTGCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGTGCNGAGCCCTGTGGAATCCGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGAATTGGGCCCGGTGTTTTCCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAAAACCGNCCCAAGNCAACGAAACTGGCTTGCGTTACAGACCGGTTCAAGGCACCATCTCCAAAANCCCTNGGNCCCACACGNCGCACCCTTGCCCTGNGCAGCGACAGNGAAACNCCTGGTGGACAGANACACGTACNCNCTCNNGCCCCACCCCGGAGCATGGCCGCCCCGCCTAATTAGNNCACACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGACCGGCTGTGCACTCGAAAGCCATGGGCCACCCCAACGCGGCTCCCCAACGACNANGNCAGCCNCGGCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNGCACACGNGAACCNCCGCCNCNGCCNCGA]


>consensus_5357#1 CCCCGAGGTTATGGTTGCGATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGC GATAATAAACTGTTGCTTCAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCT TGCGCCTAAAGCGACGGAACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGAT GAGCATGTCTGGGCTGACTACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCC TGCTCTGGACTGCCTGTTCTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGA AAACGGCGTACTGCGAACTGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAA AACNGCTCTGGCATCGCGGGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCA AAGAAGCTGGCCAACACTGCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGT GCNGAGCCCTGTGGAATCCGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGA ATTGGGCCCGGTGTTTTCCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAA AACCGNCCCAAGNCAACGAAACTGGCTTGCGTTACAGACCGGTTCAAGGCACCATCTCCA AAANCCCTNGGNCCCACACGNCGCACCCTTGCCCTGNGCAGCGACAGNGAAACNCCTGGT GGACAGANACACGTACNCNCTCNNGCCCCACCCCGGAGCATGGCCGCCCCGCCTAATTAG NNCACACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGACCGGC TGTGCACTCGAAAGCCATGGGCCACCCCAACGCGGCTCCCCAACGACNANGNCAGCCNCG GCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNGCACACGNGAACCNCCGCCN CNGCCNCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5357#0      CCGGATCATCAGCTTCGCCGGAACGGACGGGAGCGTGTTGCGTGTGTAAACAAGGGTTGC 60
consensus_5357#1      ------------------------------------------CCCCGAGGTTATGGTTGC 18
                                                                     *    * ******

consensus_5357#0      GATC-GTAAAAA-GGAAAAAGAGCGAAACGATGGCCACCGGCGATAATAAACTGTTGCTT 118
consensus_5357#1      GATCTGTAAAAAAGGAAAAAGAGTGAAACGATGGCCACCGGCGATAATAAACTGTTGCTT 78
                      **** ******* ********** ************************************

consensus_5357#0      CAGCTTGTTCAAAAGCTAG-GCCTCGCCCACTATGAGTCCCTTGCGCCTAAAGCGACGGA 177
consensus_5357#1      CAGCTTGTTCAAAAGCTAGTGCCTCGCCAACTATGAGTCCCTTGCGCCTAAAGCGACGGA 138
                      ******************* ******** *******************************

consensus_5357#0      ACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCA-GTCTGGGC-GAC 235
consensus_5357#1      ACTGCAGCGCCTGCTGGAGATACGCTCGTCCAGCGGCATGATGAGCATGTCTGGGCTGAC 198
                      *********************************************** ******** ***

consensus_5357#0      TACGCCAA-GGCAACGATCTGTATC-GACCTTGCCTCCAGCCTGCTC-GGACTGCC-GTT 291
consensus_5357#1      TACGCCAATGGCAACGATCTGTATCTGACCTTGCCTCCAGCCTGCTCTGGACTGCCTGTT 258
                      ******** **************** ********************* ******** ***

consensus_5357#0      C-GACACC-GACACGGC-GATGAAGCTGTCC-GGCCTGAGGAAAACGGCGTAC-GCGAAC 346
consensus_5357#1      CTGACACCTGACATGGCTGATGAAGCTGTCCTGGTCTGAGGAAAACGGCGTACTGCGAAC 318
                      * ****** **** *** ************* ** ****************** ******

consensus_5357#0      GGG--CGCCGCACGCTGGAAAAGGTGCTGG--ACATTAACAAAACG--CTCGGCATCG-G 399
consensus_5357#1      TGGGCTGTCGCACGCTGGAGAAGGTTCTTGGCACATTAACAAAACNGCTCTGGCATCGCG 378
                       **   * *********** ***** ** *  *************      ******* *

consensus_5357#0      GGAGATTTGTGTGCA-GGTGGGCG-TTACCCAGGTGC--AGCAGGAAGC-GGCCA-CACT 453
consensus_5357#1      GGAGATCTGTGTGCATGGTGGGCNGTTACCCAGGTGCCCGCAAAGAAGCTGGCCAACACT 438
                      ****** ******** *******  ************     * ***** ***** ****

consensus_5357#0      GCTCGAAGC-GTACAAG-CAGTACGCC-GGACAGGG--CGGCGGCGG---CGGCGGGATC 505
consensus_5357#1      GCTCGAAGCTGTACAAGGCAGTACGCCAGGACAGGGGCTGGTGCNGAGCCCTGTGGAATC 498
                      ********* ******* ********* ********   ** *  *    * * ** ***

consensus_5357#0      -GATT-TTAG---CCACCCGCAGTACGCGACGATGGCCGTGTTTCAGGCGTGCAAGCGGC 560
consensus_5357#1      CGACTATTAAAGCCCAACCCCCGCAGATAACNGCGACATNGAATTGGGCCCG-GTGTTTT 557
                       ** * ***    *** ** * * *    **   * *   *  *  ***  *   *    

consensus_5357#0      AGAAGGTGAAACCGCCCAAAACGAAGCTGCTACCGTTCAGCCATCTCAAGCCGGCCCAGT 620
consensus_5357#1      CCAAGTGGACGTTGCCAAANCCGGGAGGACAGCNGGTTGACAAAACCGNCCCAAGNCAAC 617
                        ***  **    *** **  **      *  * * *   * *   *   **    **  

consensus_5357#0      GGAGCATGCTGGAGAAGAACTGGGAGAAGTTTCTCGCCACCGGTGCGGCCGATATGGGAC 680
consensus_5357#1      GAAACTGGCTTGCG-----TTACAGACCGGTTCAAGGCACCATCTCCAAAANCCCTNGGN 672
                      * * *  *** * *      *       * ***  * ****    *           *  

consensus_5357#0      CGAAGGTTGCGAATACCAGGGGCGTTGTGGTGCAGGAGCTGGCAGCAAGGGGCGAAGAGG 740
consensus_5357#1      CCCACACGNCGCACCCTT---GCCCTGNGCAGCGACAG--NGAAACNCCTGGTGGACAGA 727
                      *  *     ** *  *     **  ** *  **   **   * * *    ** * * ** 

consensus_5357#0      AGCAGGCCAATGGTGGTGGGAGCAGTGCGGCACGGAAGCACGCGAGTTCGGAAAAGATCG 800
consensus_5357#1      NACACGTACNCNCTCNNGCCC-CACCCCGGAGCATGGCCGCCCCGCCT--AATTAGNNCA 784
                        ** *       *   *    **   ***  *     * * *    *   *  **  * 

consensus_5357#0      AACCGTACCAGAG--CTGGAAGAAACGGATGCTCGAGAAGGCGTACCGGGAGCTGGAGCT 858
consensus_5357#1      CACCATAACGGNGGGCTGCCGCANAAATCACCACGAGCGGGCACGNCNGGA-CCGGCTGT 843
                       *** ** * * *  ***    * *      * ****  ***    * *** * **   *

consensus_5357#0      GCAACGGGA--CAGTGGGTAAATGTCCCTTTTCTCAACCCCCCCACGAACCATCATTTCA 916
consensus_5357#1      GCACTCGAAAGCCATGGGCCA-----CCCCAACGCGGCTCCCCAACGACNANGNCAGCCN 898
                      ***   * *  *  ****  *     **    * *  * **** ****          * 

consensus_5357#0      CGATCCCACATCTTTTTTTACGCTTAGAGGTGTGTTGTTTCGAGGACGCAATGTTAGTGT 976
consensus_5357#1      CGGCCACACCTGCGNANNTGTAGTAGAACAGCAACTGATGCNG---CACACGNGAACCNC 955
                      **  * *** *       *    *   *       ** * *     * **     *    

consensus_5357#0      TTGCACTGTGCCAATACATATCCAGATATTATTTACCGTGAATTGTTAAGACCCTAGCTT 1036
consensus_5357#1      CGCCNCNGCCNCGA---------------------------------------------- 969
                         * * *   * *                                              

consensus_5357#0      TACGTAAGGTGCATATTTGTATACATAATTAGTAATAAAAAA 1078
consensus_5357#1      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)