These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 898 fasta sequence [GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATT-GT-TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCG-GTTCG-GAGTGGTCTTTCTGATGCTTTCGGCGCTGT-TCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCAGGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATNTTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACANATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTGACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA] [+] EMBL BX467484 [GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTCGT TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCG GTTCG GAGTGGTCTTTCTGATGCTTTCGGCGCTGT TCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCAGGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATNTTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACANATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTGACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA] [+] EMBL BX469598 [ tcgCACGAGGTGTAATTGCAGCGGGTTGTGATT GTCTGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAG ] [+] EMBL AL931935 [ ccCGAGGTTNACGAGGAGCGGGTTGTGATT GT TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGCGTTCGNGAGTGGNC TTCTGATGCTTNCGGCGCTGTCTCGGAATCTACTTCAATACGCGCACCAAG ] consensusID : consensus_5358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGGCACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTTTGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTATTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAATGAATGAAT] [+] EMBL BX618582 [GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGGCACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTTTGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTATTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAATGAATGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5358#0 GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTGTTGTCGCGAAATAATAGT 60 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 TTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTC 120 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 GGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGG 180 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 TGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA 240 consensus_5358#1 ----------GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA 50 ************************************************** consensus_5358#0 AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG 300 consensus_5358#1 AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG 110 ************************************************************ consensus_5358#0 TTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGG 360 consensus_5358#1 CCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGG 170 ************** * *************** ** ********************** consensus_5358#0 ACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT 420 consensus_5358#1 ACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT 230 ******************** * * ********************************** consensus_5358#0 ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC 480 consensus_5358#1 ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC 290 ************************************************************ consensus_5358#0 TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC 540 consensus_5358#1 TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC 350 ************************************************************ consensus_5358#0 GCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCA 600 consensus_5358#1 GCACCAAGAAGGCACCGGGCGAGATCAG-TGCATACAGTGTGTTTAACGAAAA-CTGCCA 408 **************************** *** ******************** ****** consensus_5358#0 GGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA 660 consensus_5358#1 GG-CTATCGATGGC--ACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA 465 ** *********** ** ***************************************** consensus_5358#0 TTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATN 720 consensus_5358#1 TTGACTGTGGC-GCTTTGGAG-------CCAAT-CGTC-AGATAGATT-TATTT---ATT 511 *********** ******** ***** **** **** ** * ** ** ** consensus_5358#0 TTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACAN 780 consensus_5358#1 TTCGATC--GTTATACATGGTTAGG--------AATGT---------ATTGGACGGGTGA 552 ******* **** * * ** ** **** * * * consensus_5358#0 ATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTG 840 consensus_5358#1 GATTAACAGTTTA-----CAACACACAAAAAAACG-CAATTTTTAAAAGGGTAATGAATG 606 * * ******* * *** * ******* ******** *** * * * ** consensus_5358#0 ACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA 898 consensus_5358#1 AAT------------------------------------------------------- 609 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||