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Anopheles gambiae
cluster # 5358 cluster # 5358       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5358#0 length = 898 sequences # 3  
consensus_5358#1 length = 609 sequences # 1  

consensusID : consensus_5358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 898
fasta sequence
                              [GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATT-GT-TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCG-GTTCG-GAGTGGTCTTTCTGATGCTTTCGGCGCTGT-TCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCAGGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATNTTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACANATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTGACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA]

[+] EMBL BX467484             [GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTCGT TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCG GTTCG GAGTGGTCTTTCTGATGCTTTCGGCGCTGT TCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCAGGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATNTTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACANATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTGACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA]
[+] EMBL BX469598             [        tcgCACGAGGTGTAATTGCAGCGGGTTGTGATT GTCTGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AL931935             [           ccCGAGGTTNACGAGGAGCGGGTTGTGATT GT TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGCGTTCGNGAGTGGNC TTCTGATGCTTNCGGCGCTGTCTCGGAATCTACTTCAATACGCGCACCAAG                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_5358#0 GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTGTTGTCGCGAAATAATAGT TTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTC GGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGG TGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG TTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGG ACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC GCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCA GGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA TTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATN TTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACAN ATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTG ACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA



consensusID : consensus_5358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence
                              [GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGGCACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTTTGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTATTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAATGAATGAAT]

[+] EMBL BX618582             [GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGGCACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTTTGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTATTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAATGAATGAAT]


>consensus_5358#1 GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAA CAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTC CTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATT AACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATA CCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGG AGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAA GGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGG CACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTT TGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTA TTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAA TGAATGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5358#0      GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTGTTGTCGCGAAATAATAGT 60
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      TTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTC 120
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      GGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGG 180
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      TGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA 240
consensus_5358#1      ----------GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA 50
                                **************************************************

consensus_5358#0      AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG 300
consensus_5358#1      AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG 110
                      ************************************************************

consensus_5358#0      TTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGG 360
consensus_5358#1      CCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGG 170
                        ************** * *************** ** **********************

consensus_5358#0      ACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT 420
consensus_5358#1      ACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT 230
                      ******************** * *  **********************************

consensus_5358#0      ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC 480
consensus_5358#1      ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC 290
                      ************************************************************

consensus_5358#0      TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC 540
consensus_5358#1      TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC 350
                      ************************************************************

consensus_5358#0      GCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCA 600
consensus_5358#1      GCACCAAGAAGGCACCGGGCGAGATCAG-TGCATACAGTGTGTTTAACGAAAA-CTGCCA 408
                      **************************** *** ******************** ******

consensus_5358#0      GGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA 660
consensus_5358#1      GG-CTATCGATGGC--ACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA 465
                      ** ***********  ** *****************************************

consensus_5358#0      TTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATN 720
consensus_5358#1      TTGACTGTGGC-GCTTTGGAG-------CCAAT-CGTC-AGATAGATT-TATTT---ATT 511
                      *********** ********        ***** **** **** ** * ** **   ** 

consensus_5358#0      TTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACAN 780
consensus_5358#1      TTCGATC--GTTATACATGGTTAGG--------AATGT---------ATTGGACGGGTGA 552
                      *******  **** * *   ** **        ****          *  *    *    

consensus_5358#0      ATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTG 840
consensus_5358#1      GATTAACAGTTTA-----CAACACACAAAAAAACG-CAATTTTTAAAAGGGTAATGAATG 606
                        * * *******     *  ***  * ******* ******** ***  *   * * **

consensus_5358#0      ACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA 898
consensus_5358#1      AAT------------------------------------------------------- 609
                      * *                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)