These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 786 fasta sequence [CCGCGAGTGCACGTCGGCGGTGTCGGTGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACACTGATGATGAGGTTGGTGGGTAGGAACTTAGCGGATTGCGGGGTTGAGGGAATAGGTTTTTTTTACATTTGTTTTACATTCGGTCGCCCGTCTCTGTCTGTCTGTCTATTATCATTCCACGTGTTTTGTTGAAGGC] [+] EMBL BM627769 [CCGCGAGTGCACGTCGGCGGTGTCGGTGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACAC ] [+] EMBL BM589636 [ ccgCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGCTCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAACACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCTTTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAAGCGTTCTGAAACCTGAACACTGATGATGAGGTTGGTGGGTAGGAACTTAGCGGATTGCGGGGTTGAGGGAATAGGTTTTTTTTACATTTGTTTTACATTCGGTCGCCCGTCTCTGTCTGTCTGTCTATTATCATTCCACGTGTTTTGTTGAAGGC] [+] EMBL BM649188 [ TAAACAAAGCAGAAGGGACTTTTTATTTTCACTCTCTCTCTCTGTTTTCCATCGTACAGGGAACTCGTTACGCTATTTTATAGGTACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTG ] consensusID : consensus_5360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCTACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTCTATTTCCATTGTTTTGTTGTTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAAGCAGAAGGGACTTTTAATTTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACAT] [+] EMBL AL931946 [GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCTACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTCGAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCACCGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTACGAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGTGTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTCTATTTCCATTGTTTTGTTGTTTTTTTCTTTTAACGCAACGTTTAGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAAGCAGAAGGGACTTTTAATTTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTCGTTACGCTATTTTATAGGTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5360#0 ------------------------------------------------------------ consensus_5360#1 GAATCGCCCCGAGGTTGTCCGGCGGCGAGAAGCAGCGGATCGCGATGGCCCGCCTGTTCT 60 consensus_5360#0 -------------------------CCGCGAGTGCACGTCGGCGGTGTCGG-TGGACGTC 34 consensus_5360#1 ACCACAATCCGCAGTTCGCGATCCTGGACGAGTGCACGTCGGCGGTGTCGGATGGACGTC 120 *********************** ******** consensus_5360#0 GAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCAC 94 consensus_5360#1 GAGGGCAGCATGTACCAGTACTGCCGGGCGGTCGGCATCACGCTCTTCACCGTGTCGCAC 180 ************************************************************ consensus_5360#0 CGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTAC 154 consensus_5360#1 CGGAAGTCGCTCTGGACGCACCACGACTACTACCTCAAGTTCGACGGCCACGGGGCGTAC 240 ************************************************************ consensus_5360#0 GAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGT 214 consensus_5360#1 GAGTTCGGGCCGATCGAGGGCACGCAGGACCAGTTCGGCTCGTAAGCGTCGATTTGTTGT 300 ************************************************************ consensus_5360#0 GTGTGCGTGTTTTGTTTTTTTACTTCGCTTTCTTCCCTTCGGCAAGTGGAGCCGCGCTGC 274 consensus_5360#1 GTGTGCGTGTTTTGGTTTTTTACTTCGCTTTCTTC------------------------- 335 ************** ******************** consensus_5360#0 TCGGCTTCGGCTTCTTCTATTTCCATTGTTTTTGTTGTTTTTTCTTTTAACGCAACGTTT 334 consensus_5360#1 -----------------TATTTCCATTGTTTTGTTGTTTTTTTCTTTTAACGCAACGTTT 378 *************** * *********************** consensus_5360#0 AGCGAGTAGCGTGCGTGATTTTTCCTTTTTTTTTA-AACAAAGCAGAAGGGACTTTTTAT 393 consensus_5360#1 AGCGAGTAGCGTGCGTGATTTTTCTTTTTTTTTTTTAACAAAGCAGAAGGGACTTTTAAT 438 ************************ ********* ********************* ** consensus_5360#0 TTTCACTCTCTCTCTCT--GTTTTCCATCGTACAGTGAACTCGTTACGCTATTTTATAGG 451 consensus_5360#1 TTTCACTCTCTCTCTCTCTGTTTTCAATCGTACAGTGAACTCGTTACGCTATTTTATAGG 498 ***************** ****** ********************************** consensus_5360#0 TACATATATTTACTTTTGTTCTCTCGCGATAATAGGTGTTTGTAAAGCTAATCTAGTAAA 511 consensus_5360#1 TACAT------------------------------------------------------- 503 ***** consensus_5360#0 CACGGGTGCAGGAAACCAGTTCTTTCTTTTTGTTTTAGTGAAATTTCCATCCTTCTCCCT 571 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TTTTTTATTTTAAATTCACATAAGACCACATTTTAATGCAGTTTTTCGCGTGCACAAAAA 631 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GCGTTCTGAAACCTGAACACTGATGATGAGGTTGGTGGGTAGGAACTTAGCGGATTGCGG 691 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GGTTGAGGGAATAGGTTTTTTTTACATTTGTTTTACATTCGGTCGCCCGTCTCTGTCTGT 751 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 CTGTCTATTATCATTCCACGTGTTTTGTTGAAGGC 786 consensus_5360#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||