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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence
[CAGATCCCCTGAGGTTTACCGGTCGGTGTAGAATTACATGNNGTGCGCGAGAAGACCTTTATGTGAAGTGTCACCGCCTCAGCGTGACACGAAACAACACCGGCTCTGCTTGTGCGCGTGTGCCTCGCTGAACTTGAATGGCTGCACCCTGCCGCTGTAGACTGTGCACACTTCTCACCTGTGTGTGCTGTTTTTCAATGTGCAACCCACTTCAACCTGTATCTGTCTCGCTTGTTTGCCCTGTTGTTTGTTATTCAACTTGTTGTGATGTTGTCTTGTTGACCCTGCTGTGTTGCCTGTGGAAATGTTGCGTACAGCTCCATTCAAATTAACTGCTGAACCTGGGGTACTATGTGGATTGAAGTTGCNCGGTATCACCGAACNGGGNGTTCCTTGGACAGATTCTACTATTGGCCTACCGGTGTTGCACTTGATCACATATACACCCAAGGTTTGGCGCTTTGTGGATTTGGTTTTGTCATAAACCTGTCGGCCTGTGAAATATGNGGTTGGGGTTGGATATTACACACTGGACAAAACACTGGTACTTTGGTACACCAAACCGTAATACCTATACCACCACCATTTTGGTGCCATTTTGNTGGGAACAAAGCCTGGAATACCACCCTGGTTTAATGCCGGAATGGGGAAGTTTAAAACACGCAAGTTACCACCCCTGTGAACTATAAGACGCTGCATACAACTCACGAATCGGTTATGGTGGATTACTTACCGTTCCTCCCAAGATTAATGCGGCAAACCCCTTTGTGTTTGGAAACAAACGACGCGTCTTATTAAAACGCTCCGCCACAGCACCACCNTGGGAAATTTTCAACGCTAGGGGCCNCAATTTTTGGGGGTNCAGCAAAACCATGGGTTTATAGTAACTCCTAAATCATGCGGGTTCACAAAATTTCGGCCCTTNTTAGGGTTTACCCATAGAGCACCTTACTATATNGGCAANCGAAATTTATACCCTTGGATCTTACGGTTTACCATGAGCACAATTATAGGATTAATGGATTCAAGACGAAAGTNTATGATTGATACGGGGACCACCNATTACATTACAACGAGATCATGAAGCCCACTTAACTAGCTAGATATGGGAGNTAACAGCGCCCATGTTCCCGTTTAACNTCNCACCTGGGAAGCANTGCAAAGAACAGTTACTATTATNTGAAATCTTTACACTGGGAGACGCCACGNGCACGGGTGAGCAAATTATTTACCTATGGATTACGCTCAGCCAGAAAACAAGGTTTACCCACGAACAGTTTACCANGGGGGACCGTTATGGNGAAAAGCGCCATGTGTCCCTACTGCGATTTTTGNGAACACACCACACTTTTACACACTTTCAAAGCGGGGCCCCGAAACGGGCACACTGGCCCACCTTTTNTAAAATTTTCTTACAAAACATAGTGGGTGCACACAAAAGCACGAACACATCTTTTTGGGGGTTGTTATGAGCANAAGCA]
[+] EMBL AL931955 [CAGATCCCCTGAGGTTTACCGGTCGGTGTAGAATTACATGNNGTGCGCGAGAAGACCTTTATGTGAAGTGTCACCGCCTCAGCGTGACACGAAACAACACCGGCTCTGCTTGTGCGCGTGTGCCTCGCTGAACTTGAATGGCTGCACCCTGCCGCTGTAGACTGTGCACACTTCTCACCTGTGTGTGCTGTTTTTCAATGTGCAACCCACTTCAACCTGTATCTGTCTCGCTTGTTTGCCCTGTTGTTTGTTATTCAACTTGTTGTGATGTTGTCTTGTTGACCCTGCTGTGTTGCCTGTGGAAATGTTGCGTACAGCTCCATTCAAATTAACTGCTGAACCTGGGGTACTATGTGGATTGAAGTTGCNCGGTATCACCGAACNGGGNGTTCCTTGGACAGATTCTACTATTGGCCTACCGGTGTTGCACTTGATCACATATACACCCAAGGTTTGGCGCTTTGTGGATTTGGTTTTGTCATAAACCTGTCGGCCTGTGAAATATGNGGTTGGGGTTGGATATTACACACTGGACAAAACACTGGTACTTTGGTACACCAAACCGTAATACCTATACCACCACCATTTTGGTGCCATTTTGNTGGGAACAAAGCCTGGAATACCACCCTGGTTTAATGCCGGAATGGGGAAGTTTAAAACACGCAAGTTACCACCCCTGTGAACTATAAGACGCTGCATACAACTCACGAATCGGTTATGGTGGATTACTTACCGTTCCTCCCAAGATTAATGCGGCAAACCCCTTTGTGTTTGGAAACAAACGACGCGTCTTATTAAAACGCTCCGCCACAGCACCACCNTGGGAAATTTTCAACGCTAGGGGCCNCAATTTTTGGGGGTNCAGCAAAACCATGGGTTTATAGTAACTCCTAAATCATGCGGGTTCACAAAATTTCGGCCCTTNTTAGGGTTTACCCATAGAGCACCTTACTATATNGGCAANCGAAATTTATACCCTTGGATCTTACGGTTTACCATGAGCACAATTATAGGATTAATGGATTCAAGACGAAAGTNTATGATTGATACGGGGACCACCNATTACATTACAACGAGATCATGAAGCCCACTTAACTAGCTAGATATGGGAGNTAACAGCGCCCATGTTCCCGTTTAACNTCNCACCTGGGAAGCANTGCAAAGAACAGTTACTATTATNTGAAATCTTTACACTGGGAGACGCCACGNGCACGGGTGAGCAAATTATTTACCTATGGATTACGCTCAGCCAGAAAACAAGGTTTACCCACGAACAGTTTACCANGGGGGACCGTTATGGNGAAAAGCGCCATGTGTCCCTACTGCGATTTTTGNGAACACACCACACTTTTACACACTTTCAAAGCGGGGCCCCGAAACGGGCACACTGGCCCACCTTTTNTAAAATTTTCTTACAAAACATAGTGGGTGCACACAAAAGCACGAACACATCTTTTTGGGGGTTGTTATGAGCANAAGCA]
consensusID : consensus_5361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1023 fasta sequence
[GATCCCCCGAGGTNTNGAACGATCCAACCGACCGGGTCGGTGTA-AATTACAGCGTGCGCGAGAAGACCTTTAGGGAAGGTCACCGCCTCAGCGTGACACGAAACAACAACACCGGCTCGTGCTTGTGCTCGTGTGCCTCGCTGAACTTGAAGGCGCACCCGCCGCGTAGACGGCACACTTCTCACCGTGTGTGCGTTTTTCAAGTGCAACCCCACTTCAACCGTTCGTCTCGCTGTTGCCCGTTGTTGTTATTCAACTGTGGAGTGTCTGTGCCCGCGTGTGCCGGAAGTGCTACACTCATCAATACGCGACCGGTCAGGATGAGTGCGTTACGAAGGGTTCTGAAATTTTTGCTCGGTGCCGTAATACCCAGCGCCTGGTGTACTTACGGCGATGGTGGTGAT-TCCCGCACCGTCTCTCCCACTTCTTCCCT-GCT-GGAACGACCG-TACA-GATAACATCCCGCAACAA---AAAGTGGTTCT-CCATAGAATGT-GAAGTGTACCCCCCGATACGCATGGCACGTTCCAAGTCATGCTGTCGATTGAACCGTCTCGATGTGTTATTTGCCTTAGTACTTTGTACTCTCCCGCACTTTATCGCCGGAATCGTCCAATCATCGATGACGCGTGCCTCCACCTATAAGCACATGTTACCGTCGTTAGAACCAACACGAACCGCGTGCTGCGCTGCGAAACATCCTTGAGCGGGCGACTGAAGCGATCCTTGGGGTGTAATTATTGCCATTACCAAGCGTTGTCGTGTGCGAATTAGACGAACGTCGATCGCAGTTTATTGTGAGGCTCCAGAACTTGTTAGAACACCTTCATGGGCGAATCGATGACAGTGGAGCGGATAGAGGTTGGATATGATATGATAAAATCAATGTCAACGAGTTTGTGTGATACACCCGTCGGAGGGAGAAGTCTCTG-TTTAGCTACGCTTGGTTGGTTTATAGTTTGTAAGGAAGATTACGGATTTAAGGTCTAATAAACGATCGTGCACGATCTAGAAGTAAAAAAAAAAAAA]
[+] EMBL AL932827 [GATCCCCCGAGGTNTNGAACGATCCAACCGACCGGGTCGGTGTA AATTACAGCGTGCGCGAGAAGACCTTTAAGGAAGGTCACCGCCTCAGCGTGACAC AA AACAACACCGGCTC TGCTTGTGCGCGTGTGCCTCGCTGAACTTGAAGGCGCACCCGCCGCGTA ACGGNACACTTCTCACCGTGTGTGCGTTTTTCAAGTGCAAACCCACTTCAACCGTTCGTCTCGCTGTTGCCCGTTGTTGTTATTCAACTGTGGAGTGTCTGTGCCCGCGTGTNCCGGAAGTGCTACACTCATCAATACGCGACCGGTCAGGATGAGTGCGTTACGAAGGGTTCTGAAATTTTTGCTCGGTGCCGTAATACCCAGCGCCTGGTGTACTTACGGCGATGGTGGTGATNTCCCGCACCGTCTGTCCCACTTCTTCCCTGGCTGGGAACGACCGTTACAGGATAACATCCCGCAACAACACAAGGTGGTTCTCCCATAGAATGTAGAAGTGTACC ]
[+] EMBL CNS096W9 [ gcGAACGATCCAACCGACC GGTCGGTGTAGAATTACAGCGTGCGCGAGAAGACCTTTAGGGAAGGTCACCGCCTCAGCGTGACACGAAACAACAACACCGGCTCGTGCTTGTGCTCGTGTGCCTCGCTGAACTTGAAGGCGCACCCGCCGCGTAGACGGCACACTTCTCACCGTGTGTGCGTTTTTCAAGTGCAACCCCACTTCAACCGTTCGTCTCGCTGTTGCCCGTTGTTGTTATTCAACTGTGGAGTGTCTGTGCCCGCGTGTGCCGGAAGTGCTACACTCATCAATACGCGACCGGTCAGGATGAGTGCGTTACGAAGGGTTCTGAAATTTTTGCTCGGTGCCGTAATACCCAGCGCCTGGTGTACTTACGGCGATGGTGGTGAT TCCCGCACCGTCTCTCCCACTTCTTCCCT GCT GGAACGACCG TACA GATAACATCCCGCAACAA AAAGTGGTTCT CCATAGAATGT GAAGTGTACCCCCCGATACGCATGGCACGTTCCAAGTCATGCTGTCGATTGAACCGTCTCGATGTGTTATTTGCCTTAGTACTTTGTACTCTCCCGCACTTTATCGCCGGAATCGTCCAATCATCGATGACGCGTGCCTCCACCTATAAGCACATGTTACCGTCGTTAGAACCAACACGAACCGCGTGCTGCGCTGCGAAACATCCTTGAGCGGGCGACTGAAGCGATCCTTGGGGTGTAATTATTGCCATTACCAAGCGTTGTCGTGTGCGAATTAGACGAACGTCGATCGCAGTTTATTGTGAGGCTCCAGAACTTGTTAGAACACCTTCATGGGCGAATCGATGACAGTGGAGCGGATAGAGGTTGGATATGATATGATAAAATCAATGTCAACGAGTTTGTGTGATACACCCGTCGGAGGGAGAAGTCTCTG TTTAGCTACGCTTGGTTGGTTTATAGTTTGTAAGGAAGATTACGGATTTAAGGTCTAATAAACGATCGTGCACGATCTAGAAGTAAAAAAAAAAAAA]
[-] EMBL CNS096WA [ CCTTTAGGGAAGGTCACCGCCTCAGCGTGACACGAAACAACAACACCGGCTCGTGCTTGTGCTCGTGTGCCTCGCTGAACTTGAAGGCGCACCCGCCGCGTAGACGGCACACTTCTCACCGTGTGTGCGTTTTTCAAGTGCAACCCCACTTCAACCGTTCGTCTCGCTGTTGCCCGTTGTTGTTATTCAACTGTGGAGTGTCTGTGCCCGCGTGTGCCGGAAGTGCTACACTCATCAATACGCGACCGGTCAGGATGAGTGCGTTACGAAGGGTTCTGAAATTTTTGCTCGGTGCCGTAATACCCAGCGCCTGGTGTACTTACGGCGATGGTGGTGAT TCCCGCACCGTCTCTCCCACTTCTTCCCT GCT GGAACGACCG TACA GATAACATCCCGCAACAA AAAGTGGTTCT CCATAGAATGT GAAGTGTACCCCCCGATACGCATGGCACGTTCCAAGTCATGCTGTCGATTGAACCGTCTCGATGTGTTATTTGCCTTAGTACTTTGTACTCTCCCGCACTTTATCGCCGGAATCGTCCAATCATCGATGACGCGTGCCTCCACCTATAAGCACATGTTACCGTCGTTAGAACCAACACGAACCGCGTG TGCGCTGCGAAACATCCTTGAGCGGGCGACTGAAGCGATCCTTGGGGTGTAATTATTGCCATTACCAAGCGTTGTCGTGTGCGAATTAGACGAACGTCGATCGCAGTTTATTGTGAGGCTCCAGAACTTGTTAGAACACCTTCATGGGCGAATCGATGACAGTGGAGCGGATAGAGGTTGGATATGATATGATAAAATCAATGTCAACGAGTTTGTGTGATACACCCGTTGGAGGGAGAAGTCTCTGTTTTAG ACGCTTGGTTGGTTTATAGTTTGTAAGGAAGATTACGGATTTAA GTCTAATAAACGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5361#0 CAGATCCCCTGAGGTTTA----------------CCGGTCGGTGTAGAATTACATGNNGT 44
consensus_5361#1 --GATCCCCCGAGGTNTNGAACGATCCAACCGACCGGGTCGGTGTA-AATTACA--GCGT 55
******* ***** * * ********** ******* **
consensus_5361#0 GCGCGAGAAGACCTTTATGTGAAGTGTCACCGCCTCAGCGTGACACGAAACAACA---CC 101
consensus_5361#1 GCGCGAGAAGACCTTTAGG-GAAG-GTCACCGCCTCAGCGTGACACGAAACAACAACACC 113
***************** * **** ****************************** **
consensus_5361#0 GGCTC-TGCTTGTGCGCGTGTGCCTCGCTGAACTTGAATGGCTGCACCCTGCCGCTGTAG 160
consensus_5361#1 GGCTCGTGCTTGTGCTCGTGTGCCTCGCTGAACTTGAAGG--CGCACCC-GCCGC-GTAG 169
***** ********* ********************** * ****** ***** ****
consensus_5361#0 ACTGTGCACACTTCTCACCTGTGTGTGCTGTTTTTCAATGTGCAACCC-ACTTCAACCTG 219
consensus_5361#1 ACGG--CACACTTCTCACC-GTGTGTGC-GTTTTTCAA-GTGCAACCCCACTTCAACC-- 222
** * ************* ******** ********* ********* *********
consensus_5361#0 TATCTGTCTCGCTTGTTTGCCCTGTTGTTTGTTATTCAACT-TGTTGTGATGTTGTCTTG 278
consensus_5361#1 -GTTCGTCTCGCTG--TTGCCC-GTTGTT-GTTATTCAACTGTGGAGTGTCTGTGCCCGC 277
* ******** ****** ****** *********** ** *** ** *
consensus_5361#0 TTGACCCTGCTGTGTTGCCTGTGGAAATGTTGCGTACAGCTCCATTCAAATTAACTGCTG 338
consensus_5361#1 GTGTGCCGGAAGTGCTACACTCATCAAT-------ACGCGACCGGTCAGGATGAGTGCGT 330
** ** * *** * * *** ** ** *** * * ***
consensus_5361#0 AACCTGGGGTACTATGTGGATTGAAGTTGCNCGGTATCACCGAACNGGGNGTTCCTTGGA 398
consensus_5361#1 TACGAAGGGTTCTG---AAATTT---TTGCTCGGTGCCGTAATACCCAGCGCCTGGTGTA 384
** **** ** *** **** **** * ** * * ** *
consensus_5361#0 CAGATTCTACTATTGGCC-TACCGGTGTTGCACTTGATCACATATACACCCAAGGTTTGG 457
consensus_5361#1 CTTACGGCGATGGTGGTGATTCCCGCACCGT-CTCTCCCACTTCTTCCCTGCTGGAACGA 443
* * * *** * ** * * ** *** * * * * ** *
consensus_5361#0 CGCTTTGTGGATTTGGTTTTGTCATAAACC-TGTCGGCCTGTGAAATATGNGGTTGGGGT 516
consensus_5361#1 --CCGTACAGATAACATCCCGCAACAAAAAGTGGTTCTCCATAGAATGTGAAGT------ 495
* * *** * * * *** ** * * *** ** **
consensus_5361#0 TGGATATTACACACTGGACAAAACACTGGTACTTTGGTACACCAAACCGTAATACCTATA 576
consensus_5361#1 ---GTACCCCCCGATACGCA------TGGCACGTT------CCAAGTCATGCTGTCGATT 540
** * * * ** *** ** ** **** * * * * **
consensus_5361#0 CCACCACCATTTTGGTGCCATTTTGNTGGGAACAAAGCCTGGAATACCACCCTGGTTTAA 636
consensus_5361#1 GAACCGTC---TCGATG---TGTTATTTGCCTTAGTACTTTGTACTCTCCCGCACTTTAT 594
*** * * * ** * ** * * * * * * * * ** ****
consensus_5361#0 TGCCGGAATGGGGAAGTT-TAAAACACGCAAGTTACCACCCCTGTGAACTATAAGACGCT 695
consensus_5361#1 CGCCGGAATCGTCCAATCATCGATGACGCGTGCCTCCACCTATAAGCAC-ATGTTACCGT 653
******** * * * * * **** * ***** * * ** ** ** *
consensus_5361#0 GCATACAACT--CACGAATCGGTTATGGTGGATTACTTACCGTTCCTCCCAAGATTAATG 753
consensus_5361#1 CGTTAGAACCAACACGAACCG--CGTGCTGCGCTGCGAAACATCCTTGAGCGGGCGACTG 711
** *** ****** ** ** ** * * * * * * * * * **
consensus_5361#0 CGGCAAACCCCTTTGTGTTTGGAAACAAACGACGCGTCTTATTAAAACGCTCCGCCACAG 813
consensus_5361#1 AAGCGA--TCCTTGGGGTGTAATTATTGCCATTACCAAGCGTTGTCGTG-TGCGAATTAG 768
** * **** * ** * * * * ** * * ** **
consensus_5361#0 CACCACCNTGGGAAATTTTCAACGCTAGGGGCCNCAATTTTTGGGGGTNCAGCAA--AAC 871
consensus_5361#1 ACGAACGTCGATCGCAGTTTATTGTGAGGCTCCAGAACTTGTTAGAACACCTTCATGGGC 828
** * ** * * *** ** ** ** * * * * *
consensus_5361#0 CATGGGTTTATAGTAACTCCTAAATCATGCGGGTTCACAAAATTTCGGCCCTTNTTAGGG 931
consensus_5361#1 GAATCGATGACAGTGGAGCGGATAGAGGTTGGATATGATATGATAAAATCAATGTCAACG 888
* * * * *** * * * ** * * * * * * * *
consensus_5361#0 TTTACCCATAGAGCACCTTACTATATNGGCAANCGAAATTTA--TACCCTTGGAT--CTT 987
consensus_5361#1 AGTTTGTGTGATACACCCGTCGGAGGGAGAAGTCTCTGTTTAGCTACGCTTGGTTGGTTT 948
* * **** * * * * **** *** ***** * **
consensus_5361#0 ACGGTTTACCATGAGCACAATTATAGGATTAATGGATTCAAGACGAAAGTNTATGATTGA 1047
consensus_5361#1 ATAGTTTG---TAAGGAAGATTACGGATTTAAGGTCTAATAAACGATCGTGCACGATCTA 1005
* **** * ** * **** * **** * * * **** ** * *** *
consensus_5361#0 TACGGGGACCACCNATTACATTACAACGAGATCATGAAGCCCACTTAACTAGCTAGATAT 1107
consensus_5361#1 GAAGTAAAAAAAAAAAAA------------------------------------------ 1023
* * * * * *
consensus_5361#0 GGGAGNTAACAGCGCCCATGTTCCCGTTTAACNTCNCACCTGGGAAGCANTGCAAAGAAC 1167
consensus_5361#1 ------------------------------------------------------------
consensus_5361#0 AGTTACTATTATNTGAAATCTTTACACTGGGAGACGCCACGNGCACGGGTGAGCAAATTA 1227
consensus_5361#1 ------------------------------------------------------------
consensus_5361#0 TTTACCTATGGATTACGCTCAGCCAGAAAACAAGGTTTACCCACGAACAGTTTACCANGG 1287
consensus_5361#1 ------------------------------------------------------------
consensus_5361#0 GGGACCGTTATGGNGAAAAGCGCCATGTGTCCCTACTGCGATTTTTGNGAACACACCACA 1347
consensus_5361#1 ------------------------------------------------------------
consensus_5361#0 CTTTTACACACTTTCAAAGCGGGGCCCCGAAACGGGCACACTGGCCCACCTTTTNTAAAA 1407
consensus_5361#1 ------------------------------------------------------------
consensus_5361#0 TTTTCTTACAAAACATAGTGGGTGCACACAAAAGCACGAACACATCTTTTTGGGGGTTGT 1467
consensus_5361#1 ------------------------------------------------------------
consensus_5361#0 TATGAGCANAAGCA 1481
consensus_5361#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||