These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [AGAATCGCCCGAGGTTGCAAATGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCGTGACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACTTTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCACAATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGTAGGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCGTTCGTTCCAGCAGTTTATCGGCG] [+] EMBL AL931960 [AGAATCGCCCGAGGTTGCAAATGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCGTGACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACTTTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCACAATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGTAGGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCGTTCGTTCCAGCAGTTTATCGGCG] consensusID : consensus_5363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 562 fasta sequence [CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGAAACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATA-CCGCTGGAGGAGATCAACTTTGTGAA-GGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACCCCAAACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTGTC] [+] EMBL CNS08PWL [CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGAAACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATA CCGCTGGAGGAGATCAACTTTGTGAA GGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAATTACCCCAAACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACCATGCCCGCGAGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACTTTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGGATCCGATCAAAGATCAAACGTTTTTCCTGTC] [+] EMBL CNS08I9F [ AATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCGTGACCGAAACCGAGGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCGGCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCGGTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATA CCGCTGGAGGAGATCAACTTTGTGAA GGACTACTGGGTGGAGGTGTTT ] [+] EMBL CNS094ZS [ TCGATGAG CCGGCTACTGTTCCGGGGAGCAGGATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATACCCGCTGGAGGAGATCAACTTTGTGAAGGGACTACTGGGTGGAGGTGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5363#0 AGAATCGCCCGAGGTTGCAAA-TGCTTCAACCGAGCCATTATCGTAACTTGATGCAATCG 59 consensus_5363#1 -------CTAGCACCGGCAAAATGTTCCAAGCGAGTCATTATCGTAACTTGATGCAATCG 53 * * ***** ** * *** **** ************************ consensus_5363#0 TGACCTGAAACCGATACGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCG 119 consensus_5363#1 TGACC-GAAACCGA-GGGGCAAAAATCCAATGTTTCGCCGTGTGGTGGTCGGTATATCCG 111 ***** ******** ******************************************* consensus_5363#0 GCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCG 179 consensus_5363#1 GCGGCGTAGATAGTGCAGTGTCCGCGTATCTGCTCAAGAAGCGAGGCTTCGAGGTATGCG 171 ************************************************************ consensus_5363#0 GTGCCTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGG 239 consensus_5363#1 GTGCTTTTATGAAAAATTGGGACCTAATCGATGAGTCCGGCTACTGTTCCGGGGAGCAGG 231 **** ******************************************************* consensus_5363#0 ATTTTGAGGATGCCCAGCGGCTGTGTCGGACGCTGAACATACCGCTGGAGGAGATCAACT 299 consensus_5363#1 ATTTCGAGGATGCCCAGCGGCTATGCCGAACGCTAAGCATACCGCTGGAGGAGATCAACT 291 **** ***************** ** ** ***** * *********************** consensus_5363#0 TTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAA 359 consensus_5363#1 TTGTGAAGGACTACTGGGTGGAGGTGTTTGGAAACTTTCTCAAGGACTATGAAGCAGGAA 351 ************************************************************ consensus_5363#0 TTACGCCAAATCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACC 419 consensus_5363#1 TTACCCCAAACCCGGACATTCTGTGCAACAGACACATCAAGTTCAATCGCTTCTTTCACC 411 **** ***** ************************************************* consensus_5363#0 ATGCCCGCGAGCGGCTTGGTGCTGATGCGATCGCTACCGGCCACTATGCCCGAACCAACT 479 consensus_5363#1 ATGCCCGCGAGCGGCTTGGTGCTGATGCGGTCGCTACCGGCCACTATGCCCGTACCAACT 471 ***************************** ********************** ******* consensus_5363#0 TTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGG 539 consensus_5363#1 TTGGCCCATTTCTGGAGCGGTACAATGAAAATGAAAAAGTACGCCTCCTGATGGCACCGG 531 ************************************************************ consensus_5363#0 ATCCGATCAAAGATCAAACGTTTTTCCTATCACAAATCTCCGCCGAAGCCCTGCGCCGCA 599 consensus_5363#1 ATCCGATCAAAGATCAAACGTTTTTCCTGTC----------------------------- 562 **************************** ** consensus_5363#0 CAATTGTTCCCGATCGGTTGCCCTGACGAAGCCGCAAGTCAAGCGGCTAGCCATCGAGGT 659 consensus_5363#1 ------------------------------------------------------------ consensus_5363#0 AGGCCTCGAAGCGTACGCACGCAAGAAGGAAAGCATGGGCATCTGTTTCGTGGGCAAGCG 719 consensus_5363#1 ------------------------------------------------------------ consensus_5363#0 TTCGTTCCAGCAGTTTATCGGCG 742 consensus_5363#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||