cluster # 5366

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Anopheles gambiae
cluster # 5366 cluster # 5366 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5366#0 length = 817 sequences # 1

consensus_5366#1 length = 652 sequences # 3

consensusID : consensus_5366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence

                              [AAANCCCCATTTTGCAGCGGGTGTGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCAGTACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTACAACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGGGCACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCAGATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTCCTACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGCAGCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGTGCAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCAAAGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTTGTTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCAGTTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG]

[+] EMBL AL932006             [AAANCCCCATTTTGCAGCGGGTGTGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCAGTACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTACAACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGGGCACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCAGATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTCCTACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGCAGCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGTGCAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCAAAGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTTGTTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCAGTTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG]




>consensus_5366#0
AAANCCCCATTTTGCAGCGGGTGTGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCA
GTACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTA
CAACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGG
GCACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCC
TTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCA
GATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGC
TGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTA
CTGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTC
CTACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGC
AGCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGT
GCAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCA
AAGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTT
GTTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCA
GTTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG

consensusID : consensus_5366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 652
fasta sequence

                              [GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTCTACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATTCGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGTACGGTACAGCGCCGCCAGCTCGAGGGTTGCCTGTGCCGTGTGCCGAGCTCGTTCTACAACCTCGTGTGGGATGTGCTGGAGCGAACACCGCACGGCATTACCGTGCAGGGGCACAATCTGCCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTTGCCGCCGAGCAAAGACATTTCGCCACTGTTTTCGCTCTCCTACTCGCAGACGACCGGCTACCTGGCCCGGGCTGCCGTCAACAGTGTGCTGCAGCGGTGCGCCCTCTCCACCGAGGACT]

[+] EMBL BX614985             [GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTCTACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATTCGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGTACGGTACAGCGCCGCCAGCTCGAGGGTTGCCTGTGCCGTGTGCCGAGCTCGTTCTACAACCTCGTGTGGGATGTGCTGGAGCGAACACCGCACGGCATTACCGTGCAGGGGCACAATCTGCCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACC                                                                                                                              ]
[+] EMBL BM610406             [                                                                                                           CCGGTTTCAAATTCGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGTACGGTACAGCGCCGCCAGCTCGAGGGTTGCTTGTGCCGTGTGCCGAGCTCGTTCTACAACCTCGTGTGGGATGTGCTGGAGCGCACACCGCACGGCATTACCGTGCAGGGGCACAATCTGCCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTTGCCGCCGAGCAAAGACATTTCGCCACTGTTTTCGCTCTCCTACTCGCAGACGACCGGCTACCTGGCCCGGGCTGCCGTCAACAGTGTGCTGCAGCGGTGCGCCCTCTCCACCGAGGACT]
[+] EMBL BX613063             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGTGCATGGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGGGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTGGCCGCCGAGCAAAGACATTTCGCCACTGTTTTCGCTC                                                                                  ]




>consensus_5366#1
GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTC
TACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATT
CGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGT
ACGGTACAGCGCCGCCAGCTCGAGGGTTGCCTGTGCCGTGTGCCGAGCTCGTTCTACAAC
CTCGTGTGGGATGTGCTGGAGCGAACACCGCACGGCATTACCGTGCAGGGGCACAATCTG
CCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTC
GAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTG
TGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGAT
CTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTTGCCGCCG
AGCAAAGACATTTCGCCACTGTTTTCGCTCTCCTACTCGCAGACGACCGGCTACCTGGCC
CGGGCTGCCGTCAACAGTGTGCTGCAGCGGTGCGCCCTCTCCACCGAGGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5366#0      ------------------------------------------------------------
consensus_5366#1      GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTC 60
                                                                                  

consensus_5366#0      --------------------------------------------------------AAAN 4
consensus_5366#1      TACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATT 120
                                                                              **  

consensus_5366#0      CCCCATTT--TGCAGCGGGTG-TGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCAG 61
consensus_5366#1      CGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAG-GATCACTTCAG 179
                      * ***  *  *********** **** ********************* ***********

consensus_5366#0      TACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTAC 121
consensus_5366#1      TACGGTACAGC-GCCGCCAGCTCGAGGGTTGCCTGTGCC-GTGTGCCGAGCTCGTTCTAC 237
                      *********** ******************** ****** ********************

consensus_5366#0      AACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGGG 181
consensus_5366#1      AACCTCGTGTG-GGATGTGCTGGAGC-GAACACC-GCAC-GGCATTACC-GTGCAG-GGG 291
                      **********  ************** * ***** **** ** ****** ****** ***

consensus_5366#0      CACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCCT 241
consensus_5366#1      CACAATCTGCCCGCCATGCC--GACCCTG-ACCAACAAGAGCC-GCAGC-GAGCTGTCCT 346
                      *********** ****** *  ******* ************* ***** **********

consensus_5366#0      TCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCAG 301
consensus_5366#1      TCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCAC-GCAACCCGA-GCGG--CGCCAG 402
                      ************************************* ****** ** ** *   *****

consensus_5366#0      ATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGCT 361
consensus_5366#1      ATC--GCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCC-GCAATCC-GGAGCT 458
                      ***    ********************* * ************** ******* ******

consensus_5366#0      GCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTAC 421
consensus_5366#1      GCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTG--CTGGAGGACTCGTTCGCGATGTAC 516
                      *********************************    ***********************

consensus_5366#0      TGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTCC 481
consensus_5366#1      TGCAAAGACCACA-GCTTGCC-GCCGAGCAAAGACATTTCGCCACTGTTTTCGC-TCTCC 573
                      ************* ******* ******************************** *****

consensus_5366#0      TACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGCA 541
consensus_5366#1      TACTCGCA-GAC-GACCGGCTACCTGG--CCCGGGCTG--CCGTCAACAGTGTGCT-GCA 626
                      ******** *** ****** ***** *  ** *****   * ************** ***

consensus_5366#0      GCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGTG 601
consensus_5366#1      GCGGTGCGCCCTCTCCACCGAGG-ACT--------------------------------- 652
                      **********************  ***                                 

consensus_5366#0      CAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCAA 661
consensus_5366#1      ------------------------------------------------------------
                                                                                  

consensus_5366#0      AGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTTG 721
consensus_5366#1      ------------------------------------------------------------
                                                                                  

consensus_5366#0      TTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCAG 781
consensus_5366#1      ------------------------------------------------------------
                                                                                  

consensus_5366#0      TTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG 817
consensus_5366#1      ------------------------------------